Os08g0504600

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Revision as of 13:07, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0504600| Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein| Version = NM_001068715.1 GI:115477167 Gen...")
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Gene Name

Os08g0504600

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001068715.1 GI:115477167 GeneID:4345972

Length

8122 bp

Definition

Oryza sativa Japonica Group Os08g0504600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:25026721..25034842

Sequence Coding Region

25026975..25027124,25028422..25028522,25029657..25030035,25030756..25031601,25032229..25032286
,25032468..25032535,25032611..25032717,25033513..25033600,25033995..25034252

Expression

GEO Profiles:Os08g0504600

Genome Context

<gbrowseImage1> name=NC_008401:25026721..25034842 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:25026721..25034842 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcggaggatgccgccggcggcggcggcgacggaggccggtacttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaagctgcgggagttcgtggacgactacaccaacaacaccctcgtggagtacgtcattttgttgctcgaaggtggaaagcgcaaagatgaggccatcaaggagcttgatgtatttctgggaaaggatagtcgcgcctttatttcctggttgtgggatcatttatctgtaaatttgcacctttatgtgcaaacacaagaacaactgcaggtggataataaggatgacgaagccccaaatgaactacctggagaacagaaatcgtcagagttgcagttgagaagcaaagatcaaactcatcctgagtgtgtaagtgaacccagtacaaccagaagtcggactaaaagggattggaaaggaattggtcgggagggtaatgaaaactttccacttagaagtgtactgaaggatattttgcatggtgaggagaaaaggtcgcaaaaggttaatgaaatacgacatcccccatcgtctaatcaacggaatggcagaaagcgtgacagggatgacgaaccgcaacaaataaagagagacttgcctttgcgccgtgacgttggtgcctcctgccgtcttctaaagtttgctgttcgagatgctgtgaaagctgtacagcaaaccagcagctctacggaaccatcttctaagcgcctacgttctgtggtttccacatcatctgcagacagcctgcatggtaaaagaatagaaacatctacagagggccacctgtatgacaaaaagccagaaagaactaggcaaattcttcaagtacctggagctgctttagctctcagagctgccgcagaggctgctgcagattctaccaaagttagatctactggaagcgtgtttagtcgattaggccaagggaatgctgtgaatcagacaccccgttctcgtgaacagcagagagattacgaagatttcaaaccagctacaactgcagatgatcatgattctgatcgatacgataatgatgatgagatatccggagacataacattagaagatggggaagctgaaatgaatgttgattctacatctgatgatgatgttagcagagatgatggaatcactagatatggaagttccgattcacaagtagctgcttacccttcagttgtggagaagaaagatgttttcgtgaaatgcagtgttgaaccagagaccagtacaatgaggcattcaaacttgattaaggaggagcaaccaggttctttgtcagtaataagtatgagcaaaactgtggttgtcccagttaatgccaacaatctggaaccttccaattatgagacaccaaaagatgttcatgttgtagagaaaacggacattacacccatgaatgctactgttacctctctgactagtaatatcaaagaactagctcatggagaagtccaaaaggattcacagcgatctgcaattgcatcatctgttacgagttcatatagcactgcacacccaactgaggacgcagactctagaaccctctatgttagcaatgttcattttggtgccaccaaggacgcgctatctcgccatttcaacaagtttggtgcggtgctcaaagtagttattgttactaatgcagcaacagggcagccaacaggatctgcttacgtagaatttttacataaagaatcagctgaacgtgctctttcattgaatggaacatcattcatggcacgcatcctcaaggttgtcaggcgaagttctcatgaagctgcacatttttatggttggcctggtggtgggcgaacatcaatgtatgccaggcatggtagaatggcatacccaaggggtggcctccctggtagcaccttcagagggcgtgctccaatgatagctggtgctagaagtttacaatggaaacgggagccttcagttactgattcaaatacaggtgcaaccgtggcactgccttctgctgaacaggtgcttcctcctgccacatag</cdnaseq>

Protein Sequence

<aaseq>MEAEDAAGGGGDGGRYFKADLTGAGVVQLSERVREKLREFVDDY TNNTLVEYVILLLEGGKRKDEAIKELDVFLGKDSRAFISWLWDHLSVNLHLYVQTQEQ LQVDNKDDEAPNELPGEQKSSELQLRSKDQTHPECVSEPSTTRSRTKRDWKGIGREGN ENFPLRSVLKDILHGEEKRSQKVNEIRHPPSSNQRNGRKRDRDDEPQQIKRDLPLRRD VGASCRLLKFAVRDAVKAVQQTSSSTEPSSKRLRSVVSTSSADSLHGKRIETSTEGHL YDKKPERTRQILQVPGAALALRAAAEAAADSTKVRSTGSVFSRLGQGNAVNQTPRSRE QQRDYEDFKPATTADDHDSDRYDNDDEISGDITLEDGEAEMNVDSTSDDDVSRDDGIT RYGSSDSQVAAYPSVVEKKDVFVKCSVEPETSTMRHSNLIKEEQPGSLSVISMSKTVV VPVNANNLEPSNYETPKDVHVVEKTDITPMNATVTSLTSNIKELAHGEVQKDSQRSAI ASSVTSSYSTAHPTEDADSRTLYVSNVHFGATKDALSRHFNKFGAVLKVVIVTNAATG QPTGSAYVEFLHKESAERALSLNGTSFMARILKVVRRSSHEAAHFYGWPGGGRTSMYA RHGRMAYPRGGLPGSTFRGRAPMIAGARSLQWKREPSVTDSNTGATVALPSAEQVLPP AT</aaseq>

Gene Sequence

<dnaseqindica>255..404#1702..1802#2937..3315#4036..4881#5509..5566#5748..5815#5891..5997#6793..6880#7275..7532#ctcgttgcctcccctccctgcctacccccatctccacctccgcctccacgcgtcgccgccgccgccgccgccgccgccgccgccgtccgggcagtcgaccgctgcggcgccgtcggagctccccgggccccgtggatgagagcggcgcggataaggtcgccgcgggcccgcttcgtctgcacccgtctcggccccgggaccccactgggctggatctaggtttggcgaggggggttctggaagcctccgccgcgatggaggcggaggatgccgccggcggcggcggcgacggaggccggtacttcaaggccgacctcaccggcgccggcgtcgtccagctcagcgagcgcgtgcgggagaagctgcgggagttcgtggacgactacaccaacaacaccctcgtggtacgacgccgccgccaccgttctcttcccttcccttcccttccctcctctcgcgcatcgttggcgctccgctcggtgtgcgggcagtgtagtgacgccgttcgtttgtggtttggattatatgcttgcaacttcgggattttagtctagttttgagcgccttttgtagtggtatgccgcggtttgtgtgagatatatgcctgtgcggaggagctaaaattttgctaaactttcatgtaacctagcccgaattatgccgctgcgcgctgtgtttaatgtttggtcctctgctgttagtgtaatcactcataattgccgtaagatcccgtcttctttaaatatgttgggtgtgttcgcttcctggaggtttggttgggttggaacgaaatgttgtttatttgctctaatgtagttgggttggaacggaatgttttttatttgctctaatgtagtgcccctgtatactgctgtgctttgtttaattgaatccagtcggtctaatggtgccagaagcactagaatattgtgtagttacctgaaacatgtcccaaaaaaaaaattctaaaatgggagcataatgtactgccgctccattgcttttcttaggagattcttttcgcgaggtgatcactgattagatgctaggagcctagaaattcttaaagttccttttttatttttgccatgtatggatggatattttggtctaatctagttaagtttatttatttaatactaggttaggagatcgatatctcctttcaagaacatgatcatgcagtgtagcaacaaagattacattatctcatacttgacttgtgattagtcaagttcccatgggtgctttccattttagttcttattaacacgccatttattttctatttccctttccccatccatcaccaaattttcttaaccagatttgctattttgacctcatcttcttgggcacaacactttactatccaaaggtgaccaaactgtgataagattgctgcatctcctcattgtggttatagcatttatgcaggaatctgctgctaggttttcctctacctttaattaatgacaccatttttaatcatcgtgggtagaattgacatattctgtctgaggaagcatcctgcaatggcatggaatacattgctttcagcacattgtattgccttgaattcattttattcattttcttacacactagaatgctaaataccatcctttaccttttctatgttacactgaaatgctcctagagaaagcaataagtgtacctctgttgttgttttaagtgcaggagtacgtcattttgttgctcgaaggtggaaagcgcaaagatgaggccatcaaggagcttgatgtatttctgggaaaggatagtcgcgcctttatttcctggttagttcacatgtcatatagattgaattcttaattttttggcatcaactatgttgttaaaccaacctttaatatatttttgcatttgtgcacagcgttctctatatttttgaactaatgcatgcctagcaatttactcctagactatgcaatttactcctttggtacttaggcaaattgatgttttgcatacatttaaccatcaaaagcatttataacatctggttagaggggcgtatgaaaatatgccacatcccatggagtataattttcctgctaaaagtaaccctgcagcatggctaggcgcatccatccacataagcaaagacatccatgccgatatggttgggctgctgcatgacccaactaaatcacattatgggtttaggccacgctcttttttagaggatgaatttagctgagtagctgcacgcaaaatgagaaatgtgattagtatatgattaattgtgtattgattataaaaaaattgaaaaataaatttatttcatttttgaaagcacgttctatatagaatttttgaaagcacactatttagcagtttgaaaagcgtgctaatgggaacgaggcgtagataagctcaaatagcactttagaaaaggcccttagataaacttgtttggaagtacatggatcaagatcaaccatctgcaagttcaagaacttgccatgtaactctttaatcaaatcgcaaatcatttgtgactgagcattggaaaagaattaaaaaaaatgtttttgatctttgcattggttttttaaataaattttgctactttaccattcgtgtgaagtggagaggttgactgtagtaaaaacgaaaaacactttttacctggattatttctgtatataatttgcaaggactacaatatattataattacttgttaaacctgaaactggtttgtatctactgattaatttagcctttgtcatttgcccatacaagcagttcaggttacagagactgtttcttgcctgaatccatcatttcttgtgcatacttctcataccacttcaacaaaatatccagtccagaacaataaacaatccttgcttatttacatgcatattactttatcaagtgtaactgaataccatgtctttcatgtaggttgtgggatcatttatctgtaaatttgcacctttatgtgcaaacacaagaacaactgcaggtggataataaggatgacgaagccccaaatgaactacctggagaacagaaatcgtcagagttgcagttgagaagcaaagatcaaactcatcctgagtgtgtaagtgaacccagtacaaccagaagtcggactaaaagggattggaaaggaattggtcgggagggtaatgaaaactttccacttagaagtgtactgaaggatattttgcatggtgaggagaaaaggtcgcaaaaggttaatgaaatacgacatcccccatcgtctaatcaacggaatggcagaaagcgtgacagggatgacgaaccgcaacaaataaaggtgtgtgatgtgataataggagatgcataatgcttgtgttaaccaaatggattgactgaaacactctgctgtcttgcatacttttttaatgattcactttttcattaacttgctttgtgttgcagctaaacatttaattgtttatacttctctaaattgtgcaatggaagattccttttaacacactaaatatgaacttttatagcatcagcacaggattataagaggatagtatcatgttagttgttaaaatgaaggtgcactgcgattttccacattccctatttgaactatacactacattgcaacaaacgttctttgcaactgatgaattaacaatttttcatctcatgaatatgcatatgtgggctctagctgtttgtgttttctgcaatacttcgcaattagaatgaacaactagctgatctagttattttttcatgtttctaagtgttggggaaatcaccaaatagccaatacagtctatgtatgtactatctacctgaaatattgttggttttctgctctaaaattttcataagggaatgttagactgcagtttagttcagcccctcaattttcggtacgactggaagcattcattcttaatgtctctactggagacaatgttttctttagcctttcattttcattgtttaaaattaattatgcaaaattcaaaacatgtcatttaccaacaattcttttctttattgccagagagacttgcctttgcgccgtgacgttggtgcctcctgccgtcttctaaagtttgctgttcgagatgctgtgaaagctgtacagcaaaccagcagctctacggaaccatcttctaagcgcctacgttctgtggtttccacatcatctgcagacagcctgcatggtaaaagaatagaaacatctacagagggccacctgtatgacaaaaagccagaaagaactaggcaaattcttcaagtacctggagctgctttagctctcagagctgccgcagaggctgctgcagattctaccaaagttagatctactggaagcgtgtttagtcgattaggccaagggaatgctgtgaatcagacaccccgttctcgtgaacagcagagagattacgaagatttcaaaccagctacaactgcagatgatcatgattctgatcgatacgataatgatgatgagatatccggagacataacattagaagatggggaagctgaaatgaatgttgattctacatctgatgatgatgttagcagagatgatggaatcactagatatggaagttccgattcacaagtagctgcttacccttcagttgtggagaagaaagatgttttcgtgaaatgcagtgttgaaccagagaccagtacaatgaggcattcaaacttgattaaggaggagcaaccaggttctttgtcagtaataagtatgagcaaaactgtggttgtcccagttaatgccaacaatctggaaccttccaattatgagacaccaaaagatgttcatgttgtagagaaaacggacattacacccatgaatgctactgttacctctctgactagtaatatcaaagtaagtagcttcatattttaaaccaatcaaattttattagtaactgcttagtaactgcactatgtttaccatttctgcatacccactctgattattttgcttaaagttttacttctatttttaaaaaagtatcatctaagtaagtatattggatatttgcatgtgataactatcgctgatttcccatttgactggaatagatgagaagcaaggctgacagatcgtcgagtgaaaacacattattaaatgatttgtcactactttcctctattggattgaactgggttggttagtggtttgcaggattagtttattgtgcttttatctcttcatggccagctgaaaaggccgatgcagattggttcacatcaataatgcttggaatgagaaacctatagctacttcacttgcatgttccattgattcagactacttactgtattagcttgcttctatattttgttaatacacaggaaatattttacattctttagctgttacttatgcctaattactgagtaattgtttgttccatttggtcacattccttgtatttagctccaatgctttaaaattatttaggaatcttcaggtagattttatctgactgttgagaaaaccactcaggaactagctcatggagaagtccaaaaggattcacagcgatctgcaattgcatcatctggtatgtgacataactcaaaatcattttagcatttaaaattgtttaattcaaaagtcaaagcataatgctgaactagcactctgatgtaaattcccatcagaaacaatcatcaggacggaatgtttcaccttatctcactattgtttattgcacaatataatatatctgtccttccttgcagttacgagttcatatagcactgcacacccaactgaggacgcagactctagaaccctctatgttagcaatgttggtatctatgtcttctcatcacacatggtttcttgtcctatattcttatacctttgtcaattttatttgaaggttcattttggtgccaccaaggacgcgctatctcgccatttcaacaagtttggtgcggtgctcaaagtagttattgttactaatgcagcaacagggcagccaacagggtactctttcatatgctaattttgctgagaagattttttttgctgttttttttatcttatatacgtaaatgccatgcaatatcatggtggtttttgagatgttgagtgatggaacatgtctagtgcaaatcagccattaggtgctattgtgcttatatcttcaactttgaagtcaacttcacatggtctaaaaaacttgagttatatctctcttcatttaacatgaaacttaaacttcagatgcaactaggaacaaccttatatctgtaccgtcagtagagcttggactgatttcatatggtgttaaatctcacccaggagtacctttggcttggtattcaaatcaaaaggtttttacatgtagaactcacagattggtgatagcagtttatatgtcatatatctccataggaaaaattgtgaatactacatccggcccaaaaaataagcttctggctttaatcgttttatgcaaactgaggaaaatattttgagtaaatataaatggcatcgcaggcattaaacttgcgtcgtgtttcattagatttatgatatttagaactcaatacttatgcaattttcttatcattgctcgaaaactatgttgctctggtcataactgagtgaattactcttgcaagtttaagaatctaaatgccatgctttcaacacataagtttaacatccttgcaagttaatgaagtaggctacaataaattagctatacttaaaatctgaagtcggccattctcatctcctaaatagaactcatgcctttttttttatccgatacagatctgcttacgtagaatttttacataaagaatcagctgaacgtgctctttcattgaatggaacatcattcatggcacgcatcctcaaggtactatggtcaatgaccaagctttgtccttttactttctactccctccatcccaaaatattgtaacctggtactggattattggacacaacttagaactacaaatctggatagagcccatgtccagattcgtaatactaggttgtgtctaatctagtacttaggtagctatattttgggacggagggagtatctctctctactgaaaggggagtttgaatatagagcacaatcctcctaaccaaattcagagctcatccaccttatgtttctgaattagtattccgtgaaactgttgcacaaaaggaacttgctatcactctattgctttactggttgatatattgggttgccttggagctggtgatatttcatttgtttttcccttgtacaggttgtcaggcgaagttctcatgaagctgcacatttttatggttggcctggtggtgggcgaacatcaatgtatgccaggcatggtagaatggcatacccaaggggtggcctccctggtagcaccttcagagggcgtgctccaatgatagctggtgctagaagtttacaatggaaacgggagccttcagttactgattcaaatacaggtgcaaccgtggcactgccttctgctgaacaggtgcttcctcctgccacataggggagatgaattatagtttatatgatgagaaccaaattggtgcctagcccatcatacagcatattagaatcagcataataagcttggaagatggtttatggaaaaaaatgctgctttgtaaaaaaggctaaaagcaggaaaatacaaaaaaagagaagaaaataagaaaagaggaaggagtttggagccagaatttgataaaccaccatgctgatacttggaggtggttgtattggagatcaatgaactgtcgtcacattgagcaaacagttttcttcagtcatctgaaaggacttgctgagatttgaaataacttccatggatgaggatcaattgtcaaatagagcatttgagggctagtttttggacatggcatttagtcggtagtctgggctcttcatcattgtaagctccgactgtacagcagtctatctatttgtactcttcttagaaccagtccctttcccaacaaaaaaaacagaaaaaaagaaaaggaaaaacatctctctttgtttcttttttgtttttttattgaacatagtactgttttatacttttattccttaatgtattgatataattttttagtt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0504600, RefSeq:Os08g0504600