Os08g0520900

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Revision as of 13:08, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0520900| Description = Similar to Isoamylase (Fragment)| Version = NM_001068806.1 GI:115477349 GeneID:4346068| Length = 6686 bp| Definitio...")
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Gene Name

Os08g0520900

Description

Similar to Isoamylase (Fragment)

Version

NM_001068806.1 GI:115477349 GeneID:4346068

Length

6686 bp

Definition

Oryza sativa Japonica Group Os08g0520900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:25981662..25988347

Sequence Coding Region

25981756..25982013,25982134..25982251,25982345..25982424,25982505..25982585,25982740..25982823
,25983260..25983418,25983907..25983999,25984441..25984527,25984881..25985007
,25985096..25985167,25985566..25985651,25985766..25985873,25985956..25986097
,25986679..25986755,25987149..25987301,25987658..25987750,25987855..25988037
,25988171..25988347

Expression

GEO Profiles:Os08g0520900

Genome Context

<gbrowseImage1> name=NC_008401:25981662..25988347 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:25981662..25988347 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gtggaggcggtggtgatgccggagaggtacgcgctgggtggcgcgtgcagggtgctcgccggaatgcccgcgccgctcggggccaccgcgctcgacggcggggtcaatttcgccgtctactccgccggcgcatccgccgcgtcgctctgcctcttcacccccgacgatctcgaggcggatgaggtgactgaggaggttccgcttgatcctctgttcaatcggacggggaatgtgtggcacgtcttcatcgaaggcgagctgcacaacatgctgtacgggtacaggttcgatggtatgttcgcccctcactgcggccagtacttcgatgtctccaatgtcgtggtggatccttatgccaaggcagtgataagccgaggagagtatggtgtccccggtcctggtggcgattgctggcctcaaatggctggcatgatccctcttccgtacagtacgtttgattggcaaggtgacctacctctgagatatcctcagaaggatcttgtaatctatgagatgcatttacgtgggtttacaaagcacagttcaagcaatgtagaacatccagggacttacattggggctatatcaaagcttgactatctgaaggagcttggagttaactgtgtagagttgatgccctgccatgaattcaatgagctggagtacttcagctgctcttccaagatgaacttctggggatactccacgataaactttttttcaccaatgataagatattcatcaggtgggataagaaactgtggccgtgatgccataaatgaattcaaaacttttgttagagaggctcacaaacggggaattgaggtgatcatggatgttgtcttcaatcatacagccgagggtaatgagaaaggaccaatattatcatttagggggatagataatagcacatactatatgcttgcccctaagggagagttttacaattattctggttgtgggaataccttcaactgtaatcatcctgtggtccgtgaatttattgtagattgtttaagatactgggtgacagaaatgcatgttgatggttttcgttttgatcttgcatccataatgaccagaggatgcagtctttgggatccagttaatgtgtatggaagtccagtagaaggtgacatgactacgacagggacacctcttgctactccaccacttattgacatgatcagcaatgatccaattcttggagatgtcaagctcattgctgaagcatgggatgcgggaggcctctatcaagtaggtcaatttcctcactggaaaatttggtcagaatggaatggaaagtaccgggacattgttcgtcaattcattaaaggcacagatggatttgctggtggtttcgctgaatgtttgtgtggaagtccacatctataccaggcaggggggaggaaaccttggcacagtatcaactttgtgtgtgcgcatgatggatttacgctggctgatttggtgacatataacaagaagtacaactcttcaaatggtgaggataatagagatggagaaaatcataacctcagctggaactgtggggaggaaggagaatttgcaggtttgtcggtcaaaagattgaggaagaggcaaatgcgcaatttctttgtttctctcatggtttctcaaggtgttccgatgttctacatgggcgatgaatatggccatacaaaaggaggcaacaacaacacatactgccatgaccattatgtcaattatttccgctgggacaagaaagaagaatcctctgacttgcaacggttctgctctcttatgaccaaattccgcaaacaatgcgagtcccttggcctcgcagacttcccaacagctcaacggttgcattggcatggccatcagcctgggaaacctgactggtctgagacaagccgtttcgtggccttctccacgaaagatgaaacgaaaggcgagatctacgtggccttcaacgccagccatttgccggcggttgttggactcccagagcgcccaggctaccgctgggagccgctggtggacacaggcaagccagcgccttatgacttcctcaccgacgacctgcctgatcgtgctcacgccgtccacctgttctctcatttcctcaactccaatctctaccccatgctcagctactcctccatcatccttgaattgcagcctgatgattga</cdnaseq>

Protein Sequence

<aaseq>VEAVVMPERYALGGACRVLAGMPAPLGATALDGGVNFAVYSAGA SAASLCLFTPDDLEADEVTEEVPLDPLFNRTGNVWHVFIEGELHNMLYGYRFDGMFAP HCGQYFDVSNVVVDPYAKAVISRGEYGVPGPGGDCWPQMAGMIPLPYSTFDWQGDLPL RYPQKDLVIYEMHLRGFTKHSSSNVEHPGTYIGAISKLDYLKELGVNCVELMPCHEFN ELEYFSCSSKMNFWGYSTINFFSPMIRYSSGGIRNCGRDAINEFKTFVREAHKRGIEV IMDVVFNHTAEGNEKGPILSFRGIDNSTYYMLAPKGEFYNYSGCGNTFNCNHPVVREF IVDCLRYWVTEMHVDGFRFDLASIMTRGCSLWDPVNVYGSPVEGDMTTTGTPLATPPL IDMISNDPILGDVKLIAEAWDAGGLYQVGQFPHWKIWSEWNGKYRDIVRQFIKGTDGF AGGFAECLCGSPHLYQAGGRKPWHSINFVCAHDGFTLADLVTYNKKYNSSNGEDNRDG ENHNLSWNCGEEGEFAGLSVKRLRKRQMRNFFVSLMVSQGVPMFYMGDEYGHTKGGNN NTYCHDHYVNYFRWDKKEESSDLQRFCSLMTKFRKQCESLGLADFPTAQRLHWHGHQP GKPDWSETSRFVAFSTKDETKGEIYVAFNASHLPAVVGLPERPGYRWEPLVDTGKPAP YDFLTDDLPDRAHAVHLFSHFLNSNLYPMLSYSSIILELQPDD</aaseq>

Gene Sequence

<dnaseqindica>6335..6592#6097..6214#5924..6003#5763..5843#5525..5608#4930..5088#4349..4441#3821..3907#3341..3467#3181..3252#2697..2782#2475..2582#2251..2392#1593..1669#1047..1199#598..690#311..493#1..177#gtggaggcggtggtgatgccggagaggtacgcgctgggtggcgcgtgcagggtgctcgccggaatgcccgcgccgctcggggccaccgcgctcgacggcggggtcaatttcgccgtctactccgccggcgcatccgccgcgtcgctctgcctcttcacccccgacgatctcgaggcggtgagctcgcttcagaccaccacaacggtgtcacgcgttcctcgcgaagttctcctttcgttttcagtggctctgttttttttttaatccgatgattagttgaggtggttttgcattgtgtgggatggtgcaggatgaggtgactgaggaggttccgcttgatcctctgttcaatcggacggggaatgtgtggcacgtcttcatcgaaggcgagctgcacaacatgctgtacgggtacaggttcgatggtatgttcgcccctcactgcggccagtacttcgatgtctccaatgtcgtggtggatccttatgccaaggtgatgcattagcttcattttgccttcttggtgttcttctcctatgtttgtgattgtactagttttgggaggcgcttatctgcagtttttttctattactgtaggcagtgataagccgaggagagtatggtgtccccggtcctggtggcgattgctggcctcaaatggctggcatgatccctcttccgtacagtacggtatgccaacgaatcagtttccttttttttttaactcccacttgtttccatttatcctcttttgatctgatacccgactacccgaggcagtcattatccgattatctggttgctgaatgtacaactaagatttgcatctttttttctaatattgtaattttgataataataataataatatttgtttgcaagtggaaaagaacatgatttttttttttccgaaggaattccatttattcgttgctgctatgaagtggaattgcatttatgtgccttgtaaaaaaatgaattgcattaatttgttgttgttactgtctatgatattaaatctcacagtaaaatgtttgcatttgcagtttgattggcaaggtgacctacctctgagatatcctcagaaggatcttgtaatctatgagatgcatttacgtgggtttacaaagcacagttcaagcaatgtagaacatccagggacttacattggggctatatcaaagcttgactatctgaaggtgcattttactaattacctagttcggtcaagaagctattgggccacagagcaatttataagactgttacatattcattttttataagatcttcacgtacatctagattttgcatggcttttgctgaagatatcctattctacaacttaaccataatcaagtatttctaagaccttcccggcgaaaaaaagtatttctaagacctatgctgtactttgtgatagaacacttaaaatttggtctatgcattgacaaatttacttagtgtcccagcattttttttcttattttgttcatgagtggtccattaagtgaatagctgtaataatagcctgtttatatttttagttgtgtgtttattcttaatttaaatctggaataacccctctacaggagcttggagttaactgtgtagagttgatgccctgccatgaattcaatgagctggagtacttcagctgctcttccaagtatgcagacttacatccagaattgagctataagcagtgtttgaatggggcctaacgaatcttactctcgcaaaactgatttcccccttctaaactgtgcattggttaacatccagtcaactattttgcataaggtgtttgtgtagacatgatagatatgacctactgctaacgctaccatcttgacttttataagttgataaaataaactagtttttctttgtgagatgtaaacaataattaatgttggtcacatcaatatcgtattacatttgaataattgatagcccaaatctcccactcttataagaggttccacatgcatagattttgcatagttgcagcataacagccttttctttgtctagattcttgaatgtgatttttttttccatctctaaactcagtttacctttttcccttcatttgcatggaatgttgcagttacgcacttactttcttgtaacatgtgtactgtgtacatccatacatgtttttacattattatgatttttcatattttcatagaaattcaatcattttttatattatttcatataaactgctcactatcttaccaggatgaacttctggggatactccacgataaactttttttcaccaatgataagatattcatcaggtgggataagaaactgtggccgtgatgccataaatgaattcaaaacttttgttagagaggctcacaaacggggaattgaggtaaccaagttgatatagctaattcttgtttagtaattgctgctttctcaacatatttttttacgtggggatactctattaggtgatcatggatgttgtcttcaatcatacagccgagggtaatgagaaaggaccaatattatcatttagggggatagataatagcacatactatatgcttgcccctaaggtgcgttatattgctcattgtggaaacatttctttttttttcttcagagatgtatataatgcagttttattatgtaattctatctaagaatttgaagggtgtttgtgcctacagggagagttttacaattattctggttgtgggaataccttcaactgtaatcatcctgtggtccgtgaatttattgtagattgtttaaggtacagttataaatatatatatatactgcacagtaaaacagttattgatctcttctcactgcttatcattttgtcaagaacttcaattgcaagcctgtaagggttttattcttttaatctccagcaaattgcttttttctgttttcaaaacacatactgatgatgtttcagtgcttgagtatatgtacacttggatattcttctatattctaataaagcagggaaactatatcccatcatcttatcatttttttatgctcattaataataaataaatcaaagaactgccatgtttgttgtaatatgcttgaatctcctgttaggccatttttcatgatatctttggtgtgcttatttttgtttgctttattctaaacaaaatagctttgacattgcagatactgggtgacagaaatgcatgttgatggttttcgttttgatcttgcatccataatgaccagaggatgcaggtaaacggcagttcatttattttattttattttggccgtgttttgtctttccagaagagtcttatttttttcctgttacttttacaagtctttgggatccagttaatgtgtatggaagtccagtagaaggtgacatgactacgacagggacacctcttgctactccaccacttattgacatgatcagcaatgatccaattcttggagatgtcaaggttactactttttctgacttttgttgcgcatctacaatttctagtacattcataccagtaatgttaccattcatatttttggcaatgaatttatttttctacacaagtaattcttttgttctgatataaagaaaatatctacaccaaatatcataatagtatgtactacctctgtttcatattataagtcgttttgacttttttatatgtcaaatttctttaggtttgatcaaatttatagacaaaaaagtcaaaagggacttataatatcaaatggagggagtatgatataattagcacgttgttgtatccttgtgaaatcctcttattcgtatatccggttgcatttatagctcattgctgaagcatgggatgcgggaggcctctatcaagtaggtcaatttcctcactggaaaatttggtcagaatggaatggaaaggtaacaactgcatatcttgatctattcgattttctaaggaaacaaatgtttccttgcatacactaaatagaggttatatatgagacatgtctaatttaacataacattattttactaaacttcaaaggcaaacacataaattattctgcccataaatgtacacagaagataatacatgaactgaacggtgagctatttctcagggctactgctaacaatacataaatacgccttttgttctttagcagggcatgggttatgaaaaagtaagaaacaacagtatactaagcttatatttgagctagacactgaactttggagttataacatatgatctgcatccatctaaagttaaaccaacatctaacatagttcccactttatatgtgtaattgttgttttatcatagcactgacttatattatgtgcttgtttctccagtaccgggacattgttcgtcaattcattaaaggcacagatggatttgctggtggtttcgctgaatgtttgtgtggaagtccacatctataccaggtacatagtgaaatacctttagatggatcgggtacaatgcaaattggatggggtctttggaaatgccacacgatgaactggtgataatagtgcatgaagcttacagttataattctagatccacgcatagcctttaacacacgacttgcgagtaaagaaaatggtcttgttttcttttcattcattttttggggtgctcttgtgtctggtgaggcttctatttggcctaacctctgaaaaaataacctccatgccatttttattttcttttgtccatttctctttgtgaaaagaggttatgttagatactgatagccaattggactagtacatttctgacacttaaaaatacacagagaagtaccaatgcaaagtagcttcattctagtctatgtaatttgttttttacttcacatttcctttaggtttgcataagaatcaaagctgtcacttgtatttgccattacaaatattcctttattaatcaggcaggggggaggaaaccttggcacagtatcaactttgtgtgtgcgcatgatggatttacgctggctgatttggtgacatataacaagaagtacaactcttcaaatggtgaggataatagagatggagaaaatcataacctcagctggaactgtggggaggtaatactgcactataatgtttatgcatagttcttgttttacttctattcaaatgcccgataatcttacaatggctttactcgatagctaaaccattagtgtgatgaaggtttcccctaccaaatatcatggtctgtaaacttcctgtatttcttaaagatgaaaatgtgtgttgtattttgtaaatgagatgagttatgggacttatggatgaaggttactactggtggtaggtaaaccatgagtccagtcactaggatttgatgctggtgggaaaaccatgtgagctcagtgactaggatttgcgctccgtttgcctcaccagaggcgcagacctgatatacattagcaatttcaaagtaattagttttctttcaatttgcagttgagaatcttatatagaatgcgcatttacaatttcatgtcaacaatgtaggaaggagaatttgcaggtttgtcggtcaaaagattgaggaagaggcaaatgcgcaatttctttgtttctctcatggtttctcaagtaagatttattatctgacctctttaattatcttagaccgtttgccaaaatgtaggatgacgttaagatgctagttctgtacttgccactttcattagtcacatcttctgcagtatttaacattttaaactattactttctcttaattctttagggtgttccgatgttctacatgggcgatgaatatggccatacaaaaggaggcaacaacaacacatactgccatgaccattatgtcagtccaatgtgatggtgtatttttcgaatcagctgtcattaaacccctcccttaatccatctttggttcttctataggtcaattatttccgctgggacaagaaagaagaatcctctgacttgcaacggttctgctctcttatgaccaaattccgcaagtaactactctggaacacttccacatgctaaacaagtgagaccgtctccatagcctacatcgacctcatgctttgttttcttttacattgcagacaatgcgagtcccttggcctcgcagacttcccaacagctcaacggttgcattggcatggccatcagcctgggaaacctgactggtctgagacaagccgtttcgtggccttctccacggtacctacataatgctctcacacaacacagccatttcccccaaaaaataaaagcaccgtctttttcacaacaatcaagttgaagctagatgataatttcttttatccatgtctatcacagaaagatgaaacgaaaggcgagatctacgtggccttcaacgccagccatttgccggcggttgttggactcccagagcgcccaggctaccgctgggagccgctggtggacacaggcaagccagcgccttatgacttcctcaccgacgacctgcctgatcgtgctcacgccgtccacctgttctctcatttcctcaactccaatctctaccccatgctcagctactcctccatcatccttgaattgcagcctgatgattgaaagaacaaagtatagcatagtatagcagagtaaaaaacatatgtttatagccctttttgcgtatatgttgaagttgtgcggtccttcaattttg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0520900, RefSeq:Os08g0520900