Os09g0442400

From RiceWiki
Revision as of 07:27, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0442400| Description = contains InterPro domain(s): IPR010989| Version = NM_001069825.1 GI:115479392 GeneID:4347181| Length = 3626 bp| Def...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0442400

Description

contains InterPro domain(s): IPR010989

Version

NM_001069825.1 GI:115479392 GeneID:4347181

Length

3626 bp

Definition

Oryza sativa Japonica Group Os09g0442400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:17098053..17101678

Sequence Coding Region

17099148..17099653,17099732..17100319,17100396..17100522,17100653..17100839,17100947..17101103
,17101209..17101563

Expression

GEO Profiles:Os09g0442400

Genome Context

<gbrowseImage1> name=NC_008402:17098053..17101678 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:17098053..17101678 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggagacacgcagggacgattatcctgttgttgatcttggcctgcctatggctgtgccctgggaggagcagcggcttctcgtggaacattttctcctcgtcgtcgtcgtcttcgccgccgacggccggcgagagccgcgccgccccgatgctggagctggacggcgcggtggccgacttcttgatggacggggccgacgacccgagggcggtgaagctgctggagaacgcgaggagcaagctcgccgggccgagcaactgctggcaggaggcgtaccggaggctgttcgccagctgcggcgacatcatggccgacaaggagatgcagtcgcggctggcgtggcacctcagcagctgcttccaggaggactccggccgccccccgttccctcgctgcggcgaggtctccgacatggtgcactgccgcaagaggctcggcgtctccgaggaccaggtgttcctcgagttcttcctcgagaccaacaccctgtgccaccaattgcaagctgaagcgttcaagcataacacggagaggcttgtcaacgacctgacaaggacatccaagtcagccgaggagaagctggaggtgatcgaggagaggtcagaccagatcatacaagaatcacgcaaagttcaggagacgatctcgtcgatcgaaatgcaggcagatcatctcgcagaggcgtcgaagaatgtcggagaccagatcgacgacgtgctggctcactccaaggccatctttgagcagtccaaggagattgcagactctcaggcaaagctcagagaagggcagaccgagatgagggagacgatcgatgccggcatgacgcatattcaggagtcgtatgagagccttggcaatgggatggataagctgaaggaagaggctgttgatattcagagggagatcaaaactgttggtgattccatgtccaccaagatgcaggatttgcagagcactgcaaatgatattgggagtgtggctggcaaatcattggagaatcagatgcaacttttggatggacagagcaaggccatggacggtctgaataatctgtacagctttcaggcacaagctcttgaggaaagcagggagactgtgcaaaaacttgcacagtttggccagcgtcagcaggaagagttattgtccaggcaggaagaaatccggcaagctcatgaacacctgattcataattcacactcaatactggaagctcaggaagagttcagagcaaagcaggccaacatttttgctgctctggacaaactttacatcctccacaacgccatcttagccgagtcacgtttcatcaaggcgttcttcttctactgctgcatcgtgtttctcatctacatgctcacaagcgcgaagcaaactttcagcatcaggggacatctttactttggcttgtgcatcacgcttctgctcgaaattggcctgatcaagctcggagctgacgacatcgacaagcaattctgggtcatatccaaggtgttccttgtcagatcagtgttccttgcacttgccaccgttcagatgttgcatgccatattcacattcagggattacgaactactcaaccatcacctgctccagacgctggtcgagaaggtccgggcgctggaggaaaccgccgccgccggcgagaagatgctgccctacggcggcggcggcgcggagagcgagaggagcctgatggactactcgtgggtgttcgacgagttggccgacgaggtggacagcaatgcggatccgagctacgccttgccgggggatgagcagcggcaggtggcggtggtcgctcctcgccggaggcactgcgcctcgccggaggaggtcgtcggcgagaactccatcacgacgtcggctggccggaggtacaacctgcggccacggagtagttacaggcagacgtga</cdnaseq>

Protein Sequence

<aaseq>MRRHAGTIILLLILACLWLCPGRSSGFSWNIFSSSSSSSPPTAG ESRAAPMLELDGAVADFLMDGADDPRAVKLLENARSKLAGPSNCWQEAYRRLFASCGD IMADKEMQSRLAWHLSSCFQEDSGRPPFPRCGEVSDMVHCRKRLGVSEDQVFLEFFLE TNTLCHQLQAEAFKHNTERLVNDLTRTSKSAEEKLEVIEERSDQIIQESRKVQETISS IEMQADHLAEASKNVGDQIDDVLAHSKAIFEQSKEIADSQAKLREGQTEMRETIDAGM THIQESYESLGNGMDKLKEEAVDIQREIKTVGDSMSTKMQDLQSTANDIGSVAGKSLE NQMQLLDGQSKAMDGLNNLYSFQAQALEESRETVQKLAQFGQRQQEELLSRQEEIRQA HEHLIHNSHSILEAQEEFRAKQANIFAALDKLYILHNAILAESRFIKAFFFYCCIVFL IYMLTSAKQTFSIRGHLYFGLCITLLLEIGLIKLGADDIDKQFWVISKVFLVRSVFLA LATVQMLHAIFTFRDYELLNHHLLQTLVEKVRALEETAAAGEKMLPYGGGGAESERSL MDYSWVFDELADEVDSNADPSYALPGDEQRQVAVVAPRRRHCASPEEVVGENSITTSA GRRYNLRPRSSYRQT</aaseq>

Gene Sequence

<dnaseqindica>1096..1601#1680..2267#2344..2470#2601..2787#2895..3051#3157..3511#ttcgcctcccgtcgcgctccgtcgccttcaacctctgccaacgtcaggcgatccggtgagtaagttcttcctccatttttttcctctgctcttgcctctcttttccgaatcaaaatacagcgagatttctttcttctctctgaacttcaccggtgcaacaaaattgaaccatcgttgtaggttcgttcgttctgaacttttcagaatttcgcggtatatgttcagtgttcatgtcagtaaagatagcccgcaaggtataggagaggagaatttgattggccctctgtcactggcatggtgggccaagcgcttgcgcctcttggagtagtatcttgtggtgtaagccagtgcatgcaaccgacttaaattagcaccgacttgatttgtcattaactgatcaagatcttccttgctgggaacggaacatagaaacggcaagagatctgtgccccaccattcaacttggcatccaagtagctttccacacttccattggtgtaaccgtgtaagataactagcacattccaaatgtaaaccgccattactaatatcaagttcagtgctgttcaccgtgtgtttgcgtgcgtgtcgctgtcattttcggtgtcaaaagttctaaacatttggtttagtttagggtgattctctcttaatcttcccctgcatgtgatgtgacaggctcatctggatctctctggcttgccggctaaggaacaccgggtgctatttatcagggagcccttcacaccgcaggggaaagttgcagctattttgtcactgccccttgttgcatcttgctccggcgatttgatttagaattttaggttgttactggcttcgattaatcatattttagtctgaacaaatttgcaagttaattcctattctgttcaattcggtgattcaattcgattggggtctttgggtttaagaatttcagaatgttattaacacggggcgtaacaatctgcatcaaatgaataggctttaattcttgccttcttgattgttccttcctggcaggaactgcaattaacccgtgattttactcaccaagatcgcttcttgcccggtgcaaagttcaccgatttcaccatgaggagacacgcagggacgattatcctgttgttgatcttggcctgcctatggctgtgccctgggaggagcagcggcttctcgtggaacattttctcctcgtcgtcgtcgtcttcgccgccgacggccggcgagagccgcgccgccccgatgctggagctggacggcgcggtggccgacttcttgatggacggggccgacgacccgagggcggtgaagctgctggagaacgcgaggagcaagctcgccgggccgagcaactgctggcaggaggcgtaccggaggctgttcgccagctgcggcgacatcatggccgacaaggagatgcagtcgcggctggcgtggcacctcagcagctgcttccaggaggactccggccgccccccgttccctcgctgcggcgaggtctccgacatggtgcactgccgcaagaggctcggcgtctccgaggaccaggtgttcctcgagttcttcctcgagaccaacaccctgtgccaccaattgcagtaagtgcaattctcccattttcagtttgcaattcacttctgcttcttgaatttttcatgttttgttgatttgtgtagagctgaagcgttcaagcataacacggagaggcttgtcaacgacctgacaaggacatccaagtcagccgaggagaagctggaggtgatcgaggagaggtcagaccagatcatacaagaatcacgcaaagttcaggagacgatctcgtcgatcgaaatgcaggcagatcatctcgcagaggcgtcgaagaatgtcggagaccagatcgacgacgtgctggctcactccaaggccatctttgagcagtccaaggagattgcagactctcaggcaaagctcagagaagggcagaccgagatgagggagacgatcgatgccggcatgacgcatattcaggagtcgtatgagagccttggcaatgggatggataagctgaaggaagaggctgttgatattcagagggagatcaaaactgttggtgattccatgtccaccaagatgcaggatttgcagagcactgcaaatgatattgggagtgtggctggcaaatcattggagaatcagatgcaacttttggatggacagagcaaggccatggacggtctgaataatctgtacagctttcaggcacaagctcttgaggaaagcaggtattttaacttctcgcttccattattctttttttatttcattgtaaaatatactgattttgactggaattttcagggagactgtgcaaaaacttgcacagtttggccagcgtcagcaggaagagttattgtccaggcaggaagaaatccggcaagctcatgaacacctgattcataattcacactcaatactggaagctcaggttattgtctcctcctgcatatcagaatacgagaatagttttccttttgtttgactgcttaaccatgatcaatcagtaggcataggattgacttctttttcaactgatcttttttccttttgtcctgcaggaagagttcagagcaaagcaggccaacatttttgctgctctggacaaactttacatcctccacaacgccatcttagccgagtcacgtttcatcaaggcgttcttcttctactgctgcatcgtgtttctcatctacatgctcacaagcgcgaagcaaactttcagcatcaggggacatctttactttggtaaaaaaaaaaacatctcaggatatttcacatactattagcagttactacctgtatttacaccttgtaaaatgctcaattgctattgctttttactctcctggcaggcttgtgcatcacgcttctgctcgaaattggcctgatcaagctcggagctgacgacatcgacaagcaattctgggtcatatccaaggtgttccttgtcagatcagtgttccttgcacttgccaccgttcagatgttgcatgccatattcacattcaggtaaccaccaaatccagtccatgttcatcacgatcagatctttgcatgcattcgtgattcatctcaatctcctggtaattaattagcctgtaaacttttcttcagggattacgaactactcaaccatcacctgctccagacgctggtcgagaaggtccgggcgctggaggaaaccgccgccgccggcgagaagatgctgccctacggcggcggcggcgcggagagcgagaggagcctgatggactactcgtgggtgttcgacgagttggccgacgaggtggacagcaatgcggatccgagctacgccttgccgggggatgagcagcggcaggtggcggtggtcgctcctcgccggaggcactgcgcctcgccggaggaggtcgtcggcgagaactccatcacgacgtcggctggccggaggtacaacctgcggccacggagtagttacaggcagacgtgagtttggttggagaattaactggagatcgctttgtgcgcgtaatactgtgaacgttgttgtttctgggtttccagtgtgagtttggtttgggagaggtaaagtcgtcgtgtaccgt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0442400, RefSeq:Os09g0442400