Os08g0538700

From RiceWiki
Revision as of 13:10, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0538700| Description = Retinoblastoma-associated protein, A-box domain containing protein| Version = NM_001068907.2 GI:297608903 GeneID:4346...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0538700

Description

Retinoblastoma-associated protein, A-box domain containing protein

Version

NM_001068907.2 GI:297608903 GeneID:4346176

Length

6016 bp

Definition

Oryza sativa Japonica Group Os08g0538700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27010246..27016261

Sequence Coding Region

27012385..27013323

Expression

GEO Profiles:Os08g0538700

Genome Context

<gbrowseImage1> name=NC_008401:27010246..27016261 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:27010246..27016261 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ctttacctgtgggtattgcagagaaagtacgatgttatggcctcacctgcaaaatcaataacaagtccaagtccgatgtctcctccacggttttgtgcatcccctactggaaatggctactgcagctcaaaaatggctcctatcaccccagtgagcacagccatgacaacagccaagtggcttcggagcacaatctctccccttccttcaaaaccttccggggagttactgcgcttcttctcagcttgtgataaggatgtgacagatgacattacacgcagagctggtattatacttggagccatattcacaagcagttctttcggcgaacgtatatgtaccagcgtgcgaagcacaaacaggattgatgctatctggacagagcaaagaaaaatggaagcacttaagctatattacagggttctggaatcaatgtgcagagcagagactcagatcttgagtgggaacaatcttacatcgcttctgtctaatgagcgattccatcggtgtatgattgcttgttctgctgagttagtgctggccactcacaagacagtcacaatgatgttcccagctgtgttagagaaaactggcataacagcttttgacttgagcaaagtcatagagagttttgttaggcatgaggatacacttccacgagagctgaaacgtcatttgaattcacttgaggaacggctcctggaaagcatggcatgggagaaaggctcatcaatgtacaattctctgattgttgccaggccaacactatctgcagaaataaacaggctaggtttattggctgaaccaatgccatcacttgatgccattgcggcgcaccataacatttcactcgaggggctgccacctcttccctttcaaaagcaagaacattcaccaggtagcccactggcatgctacctcatgtttcattgcctttga</cdnaseq>

Protein Sequence

<aaseq>LYLWVLQRKYDVMASPAKSITSPSPMSPPRFCASPTGNGYCSSK MAPITPVSTAMTTAKWLRSTISPLPSKPSGELLRFFSACDKDVTDDITRRAGIILGAI FTSSSFGERICTSVRSTNRIDAIWTEQRKMEALKLYYRVLESMCRAETQILSGNNLTS LLSNERFHRCMIACSAELVLATHKTVTMMFPAVLEKTGITAFDLSKVIESFVRHEDTL PRELKRHLNSLEERLLESMAWEKGSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAI AAHHNISLEGLPPLPFQKQEHSPGSPLACYLMFHCL</aaseq>

Gene Sequence

<dnaseqindica>2939..3877#aggcgagcgcaaccctagctgcaggcagcgcaggcaggagggctcgttcgtcgtctcctcccaccgccgctcgcgggagagactctggttttttttggggggagtttggttggttggtggtgttcttgacggggcatggagggtgccgcgccgccagcgagctccgggtcggaggtgacgggtgcgggctcggggaaggtggacgctggcggcggcgccgccatggaggagcggttcgccgatctgtgcaaggtacggcccctcatctggtgcggccttcgtgtggttgtctcttctgtacagtgtctgctgcttttttttttctttaccctggtgattacaatttagatgaatgcttctgagtgaagaatgatgggtggtacacctttttccagtagatttgttgtttaatttggagttttctccaaatttatgttggattgggttctcgcttagttgttatcgcctttattttggaggaaaatctatgaactttctgagatttgttgtctgtttttgggattctattttctcgtgccattgatttggattgttgcaacaaatttttggatgcgctaacctttcctcttcttgtttggtgttttttgcgagtagattttggaaattttgttttactgtactctcccttttgctccaatccctttaaaatccttgatggaaaggtgcctgttgatagtatcttcgcgatgattacttccgagtccagtatttgaatgatcttctggtgataaattttgtatatgtggctaatttaccaaatttcataaaaagaatgatctttttaatggcgtgttttcttttttctgctctaataatttgggttttactgtctaactttacctttgatttaatatgaatggtgttttggtgcctgtaagaaacaatatggatgcattcagtgttcaatttcatctctgctgtctggcttgtgatgtttttctgaatattttgctcaatttctgaattctgattgctggttagcagagcaagcttgggctggacgagagcataacgaggcaggcaatgcagctgttcaaggagagcaagagcatcctcctatccagcatgtcatccttgggcagtggatcggtaaattgcaaattcctcatctgtagtttataaacttcatgcttccattctgccacaggggttacaactaaataactaatgtatgtgtttctgcaaaccatggtgttaatgtagcctgaggagatcgagaggttctggtctgcttttgttctttactgtgtgtcaaggcttggcaaagcaggcaaagggaaggaagatggtggcatctcactgtgccagatattgagggcatttagtctgaagtaaggatatgcaagttttggtttgctgaggatcagtcatgttctccaatgcgctaatttgattattgactctattgtttctttgcagcatcgtcgatttcttcaaggagatgccacagttctgcataaaggttgggtctgttctggctggtctatatggttcagattgggagaagaggcttgaggtacccgtccagattttgtagtatgctcccctgtttgaaatctgaattcagaactgaacacatgtttgtgtttgccctgttaccgactaacgcatttatttcccttatgatcagttgaaggaactgcaagcgaatgtcgtccatttaagcctgctaagcaggtaaatctgtatttttatgtcgcatctgtcttttgcctgtattattgtttcacctgtggctacttgtaacctaatttatcctcataacaattatgtttgatgtacctttgttcatttctttttgtgcttgtctctgttctggatttgctttttcattagtttcctttctgtgaccattatgactcatgtgttggataaattaaaacaatgcttgttttgttcaggtactacaagcgtgcctaccaggagctgttcctattaaatgatgccaagccaccagaaaattctgcagaaccaaatgcacaagcctctgactattatcgctttggatggttacttttcttggtgttaagaatccaaacattcagccgatttaaggatcttgttacatccacaaatggactagtttctgtgttggtaaggatttctaccatgatcttttttcatgcaacaaggtaatcgatgcattatgttaataaaaatgtaaccaatgaatgctgtttattccatacgcatgcaggccgtacttattgttcacattcctgtgcggctaaggaatttcaatatcaaagagtcttctagttttggtaatgacaatcaactcttattttttacaaatgtgtttgctctctgtactcacatgttatggcagttatgattcgaaactaatggatagtgtttcttgatctgaatcagccaagaagtcagacaagggagtaaatcttattgcttccctatgtgaaaaataccatacatcagaagatgagttgagtaaagcaatcgagaagacaaatactctcatagtggatattctgaagaagaaaccatgtccagctgcttcagaatgtcagcaggataggttgtcttttattgatccaggtatgaatgtgatcttcaaacacaattatttccatagtcgaggtttgtgtttcaggaacttgttgccatccatctcaacttccttgcttcttgttgtttgatgcagagggcttgacatattttaagaatttgctcgaggaagactcattgaaattaagtttgctaatgctggaaaaggaatatgagaatgcaattaacaccaagggagaattagatgagcgcatgttcgcaaacgatgaggacagcttgcttggcagtggaagtctgtcaggaggtgccatcaatttaccaggcacaaaggtaattagtgttaagcctacacatgttcattcaacttaaaaccccaaatcttatgttttaactttacctgtgggtattgcagagaaagtacgatgttatggcctcacctgcaaaatcaataacaagtccaagtccgatgtctcctccacggttttgtgcatcccctactggaaatggctactgcagctcaaaaatggctcctatcaccccagtgagcacagccatgacaacagccaagtggcttcggagcacaatctctccccttccttcaaaaccttccggggagttactgcgcttcttctcagcttgtgataaggatgtgacagatgacattacacgcagagctggtattatacttggagccatattcacaagcagttctttcggcgaacgtatatgtaccagcgtgcgaagcacaaacaggattgatgctatctggacagagcaaagaaaaatggaagcacttaagctatattacagggttctggaatcaatgtgcagagcagagactcagatcttgagtgggaacaatcttacatcgcttctgtctaatgagcgattccatcggtgtatgattgcttgttctgctgagttagtgctggccactcacaagacagtcacaatgatgttcccagctgtgttagagaaaactggcataacagcttttgacttgagcaaagtcatagagagttttgttaggcatgaggatacacttccacgagagctgaaacgtcatttgaattcacttgaggaacggctcctggaaagcatggcatgggagaaaggctcatcaatgtacaattctctgattgttgccaggccaacactatctgcagaaataaacaggctaggtttattggctgaaccaatgccatcacttgatgccattgcggcgcaccataacatttcactcgaggggctgccacctcttccctttcaaaagcaagaacattcaccaggtagcccactggcatgctacctcatgtttcattgcctttgactttaaaatatatgaaagaatggttgaacttacaaattttggtatttcttgtagacaaggatgaagttagatctcccaaaagagcatgcactgaaaggaggaatgtgctggtggacaacaattcatttagatcaccagtcaaggataccctcaaatcaaagttgcctcctctccaatcagcatttttaaggtttacatcccttcctgattcctctttaaagtcattagctggttgctcaattgtcttttttttttttgcatgttcttgatttcagtccaacaagacctaatcctgcagcagggggagaattatgcgcagagacaggaataggtgtatttttgagcaaggtgagtgtctgaccatactttttgttcaaaaataagtgtctgaccataatttatgttcaaaaataagtgtctgaccttaaagtgccttaatatgcactaaaattcttactgatcgcactgcaatgtttttgtcctgcgcagatagcaaagcttgcagctattagaatcagaggtctttgtgaaaggctgcaactttctcagcaagtcttggagcgagtgtactcccttgtgcaacaaatcattatccaacaaactgctctatttttcaatcggcacatcgatcagattatactatgcagcatatatggagttgctaaggtctgtctagaaattactccccttgcaacaaagaaagatttcgcttgttatgattgctagtatatctatcaattgctgtttttccagatatctcagttagcactcagttttgtttattggtccatgtgtgcagatatctcaattggcactgacattcaaggaaattattttcggctacagaaaacaatctcagtgcaagccacaagttttccgtagtgtttatgttcattgggcatcacgaagccgcaatggggtaactgcactttcttttcagtgtttcaagaattttttatgtttaaatcgcaattattctgaaagtgtgtttactcttatggcatcagaaaacaggggaggaccatgttgacattatcactttctacaacgaagtatttattcctactgtgaaacctttgctggttgagctagggtctggtactagtccaaacaagaagaatgaggaaaaatgtgctgctgatggtatgctaatgtacttgaaacaagtttgatcattgtactgctagaatttaaaggcttttctgaaagtgcttgccatattagcaggtccatatccagaatctcctcggctatctcggtttccaaaccttcctgacatgtctcccaagaaagtttctgctgctcataacgtatatgtttcacccttgcgcacatcaaaggtacgcctcaagaaataaactgatctcccttgtgaagtttaatgttgcatttataatgaccacctgaattttaactataatggtagtccttgatcaatgttgtgacattgcaataactgaatgtttcagatggatactttgctttccccaagctccaagagctattacgcctgtgtaggggagagtactcatgcatttcagagcccctccaaggaccttaaggttataaacaaccgcctaaacaggtaaaactagaaagaagctggaaaagaagtctttttatccttatttcactagtgagaggaaaactttgtctaaactattctcaatttgtgcagtgggaagaaagtcagtggaagactgaactttgatgttgtcagtgatttggttgttgccagaagtctcagcgatcaaaatagcgcatcagcagcagcaacaacagcagatatcgccacaaaaacaccagtgaaattggagcagccagactgctagttgtttcagttataccacatcacctgtccaatacaacctactgacggaaatgctaatctgttaggtgtcagctgatctaatagttagatgttcagaagctccattttctctgtttatgtttcctgacatggggaaatttcctcagtgagcagctcttgtcttctgtcacatataaaagagctgccctgagaccccctaattaacctgcctcactttacttctgctttttctctttgaagagttgatactacagtcatgtaatgtagtagcaagtttaacagcttttgtaaatgaaatttggctcttg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0538700, RefSeq:Os08g0538700