Os08g0539400

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Revision as of 13:10, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0539400| Description = Similar to Resistance protein T10rga2-1A| Version = NM_001068912.1 GI:115477562 GeneID:4346181| Length = 9422 bp| D...")
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Gene Name

Os08g0539400

Description

Similar to Resistance protein T10rga2-1A

Version

NM_001068912.1 GI:115477562 GeneID:4346181

Length

9422 bp

Definition

Oryza sativa Japonica Group Os08g0539400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27056825..27066246

Sequence Coding Region

27056963..27058897,27062563..27063189,27065079..27066134

Expression

GEO Profiles:Os08g0539400

Genome Context

<gbrowseImage1> name=NC_008401:27056825..27066246 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:27056825..27066246 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagtcgacggtgctgagccttggcaagtccgtgctgagtggagcgcttggctacgcccaatccgctgtcgcggaggaggtggccctgcagctcggcatccagcgggaccatgccttcatcagggacgagctccatatgatgcaggccttcctcatggccgcggacgaggagcgtgacaagcacaaggttgtcaaggcctgggtgcagcaggtccgtgatgtcgcctacgatgtcgaggactgcctccaggacatggccgtccgtgtcgggaagccatcttggtggcgcaagtgcagcccaagaatgctgcttgagcggcgtcgtgtggctcagaagatgaaggagctaagagccaaggttgaggatgtcagccagaggaacaaccgctaccgcctcatcgatggttctgcctccaaggcaactgatggcatgcagtctaggattgccggtgcaacgaccatgtctgaattggaagaaacaaggcggcaacaggacaaagctaaaatggatcttgttggactgatcaacaccaatgacaaggagcttagagtgatcggggtatggagaaaaaatggtcttctcgatgataaatctattatcagaagggcctatgatgatctcaagatgaggaagtttgagtgctacgcttggatcaggctaaaaagtctttgcaatcaaacatggttgctgcagagcattagcaggcaattgtacgagaattctcttcaagagactagggaatttaaaatggaagcaactgatttagtggaccgaattctacagaagatgggaaacatggaggaagatgatttggtgagtgcatttgagggatatctgaatgagaagagttacttgattgtgcttactgacttatcctctctggaagagtggaataagataaaaatatgcttcccaagcaatgatagagggagccgaatcatattgtgcacagagcatgttgaagttgccagactatgtgtaccgcaagacagtgtacccccagagcacaagaaattgctcgatgatcagattatctatgctttctatgagaagggttctcaagacggaacactcttagtggagccaagttctagctcaaacataaccacgagtaatggtaacaacaatctcacagctaataaaaagcttggtcgcactgagacgatggtatcaaccttggaggaatctcagctcatcggtcgtgcaaaagaaaaatctgacattatcaagctaattaaaaaccaagtgagtcaacaatctcaagtgatctctatttggggaatgggtggccttggaaaaaccgctctagtccaagatatatatcgaagtcaagatgttagcagttattttgatgcacgtgcttgtgttacagtattgcgcccttttaactctgggcaactcattcacagcttagctaagcagtttggaaatgaggaaaagagagatttgtccgaactcttagaaagaaagagctatttggttgttctcgatgatctatgggataccaaggaatgggatgatatggtggcacaatttcccaacaaagctggaagctgcatcatagtcaccacaagggaagagaatattgctaagcattgttcaaaagaaacaactaatgcacatatatacaagctcagcggaatagaaaatgatcaagcactccaactcttcactaaaaaggtattcaaggaaaagacaaatttggatgaacaatatccttacttagttgaacaagcgaatctgatcttgaagaagtgtaatggacttccccttgcaatagtcaccataggtggtttcttggcaaaccaaccaaagactgctttggcgtggaggaagataaatgagcatattagtgctgagcttgagatgaatccagaactcaagaccattagcacagtcctgctgaaaagctacgatggtttaccatacaaactcaagtcatgtttcttgtatctgtccatcttccccgaagaccacaaggttagccgaaaacgtttgatgcagcgatggactgctgagggttacacaacggaggcacgtggcaaatctccaatcgaaatagctcatgacaacttcattgagctcataagtaggagcatgacactaccggttgctcaaaacgcaagtagacctgagggaggaatagactattgccagctacatgatctcatgcgtgaaatcagcatcacaaagtcaatggaggaaaaccttgtacttaggctggagaaaggttgcagctcaaagacacagggcacagcccgtcatcttgccataagcagtaattgggaaggagacaaacatgagtttgagaacacagtggacctgtcccgtgtaaggtcattaacggtgtttggaaaatggaaaccttttttcgtttctgaaaagatgaggatgctacgagtgctcgacttggaagacactgaaggtctagttgatcaccaccttgagcacattggaaagcttgttcacctaaggtacctttctctaagagaatgtcacaacatttgtcacctgccagatttgttgtgtgacttgaggcaacttgagacactagacattagaagcacgtttatagcgatgctgccgaaaaccatcgtgaagcttcggaagctaaaatatctccacgctggtaaaatcggaattgtgggtcagcaaagtatagcagagagaagtctagagctttgtactggagcatgctgcgcatgctacgtacctcgtctcgtgggagacttcaacaggcgtgatgcttgcaactacaattgctgcatccagccccgtgttctcatgatggacttagataatgatttccctatgctaccacgagggagcaggaaactaaaaagcctgcatacactccgacacgtgcacttggcgtggggaaacactgttatacaagagatagagagactcacccagctgcgtaagttaggcgtggtgggcatcaacaagaagaatggtccatccttctattcagccatctccaagctcagccagctagagtcattgtcggtgtgtgcaggttggtgtcaaggcctacatggcacgtcgtcgtcgtcgtcaacctcgcctcctccggagaacttgcagagcctcaagctgcagggtgcgctaggcaaactgccacagtggatcggaaagctccagaatctcgtgaagctgagactgatgtggaccgaactggaggatgccgatgccgccatcaaagtcctcgggacactgccaaggctggccatcctgcgcctgtgggagcattcgttcaacgatcatgtggtctgtctcaacttccgccaggagcagcaggaggccaccgcagtagtattgttcccgagcctgagggtgttggaggtaagtaggatatgtagtcatgaccgcctcgaatcagtgcagtttggaggaggcgcaacccccaagcttgagctgctgcagtttagtcatttcattggctcacgcgttggattttcgtcggggctagaagagctcgaaaatctcagggaattcatgctgagtggtaggcagaggcagtacagggacgactttgtgaaagacgtggaggagcagcttgccaaccacccaaacccaaacaagccccttctcaggttcagtctatataactaa</cdnaseq>

Protein Sequence

<aaseq>MESTVLSLGKSVLSGALGYAQSAVAEEVALQLGIQRDHAFIRDE LHMMQAFLMAADEERDKHKVVKAWVQQVRDVAYDVEDCLQDMAVRVGKPSWWRKCSPR MLLERRRVAQKMKELRAKVEDVSQRNNRYRLIDGSASKATDGMQSRIAGATTMSELEE TRRQQDKAKMDLVGLINTNDKELRVIGVWRKNGLLDDKSIIRRAYDDLKMRKFECYAW IRLKSLCNQTWLLQSISRQLYENSLQETREFKMEATDLVDRILQKMGNMEEDDLVSAF EGYLNEKSYLIVLTDLSSLEEWNKIKICFPSNDRGSRIILCTEHVEVARLCVPQDSVP PEHKKLLDDQIIYAFYEKGSQDGTLLVEPSSSSNITTSNGNNNLTANKKLGRTETMVS TLEESQLIGRAKEKSDIIKLIKNQVSQQSQVISIWGMGGLGKTALVQDIYRSQDVSSY FDARACVTVLRPFNSGQLIHSLAKQFGNEEKRDLSELLERKSYLVVLDDLWDTKEWDD MVAQFPNKAGSCIIVTTREENIAKHCSKETTNAHIYKLSGIENDQALQLFTKKVFKEK TNLDEQYPYLVEQANLILKKCNGLPLAIVTIGGFLANQPKTALAWRKINEHISAELEM NPELKTISTVLLKSYDGLPYKLKSCFLYLSIFPEDHKVSRKRLMQRWTAEGYTTEARG KSPIEIAHDNFIELISRSMTLPVAQNASRPEGGIDYCQLHDLMREISITKSMEENLVL RLEKGCSSKTQGTARHLAISSNWEGDKHEFENTVDLSRVRSLTVFGKWKPFFVSEKMR MLRVLDLEDTEGLVDHHLEHIGKLVHLRYLSLRECHNICHLPDLLCDLRQLETLDIRS TFIAMLPKTIVKLRKLKYLHAGKIGIVGQQSIAERSLELCTGACCACYVPRLVGDFNR RDACNYNCCIQPRVLMMDLDNDFPMLPRGSRKLKSLHTLRHVHLAWGNTVIQEIERLT QLRKLGVVGINKKNGPSFYSAISKLSQLESLSVCAGWCQGLHGTSSSSSTSPPPENLQ SLKLQGALGKLPQWIGKLQNLVKLRLMWTELEDADAAIKVLGTLPRLAILRLWEHSFN DHVVCLNFRQEQQEATAVVLFPSLRVLEVSRICSHDRLESVQFGGGATPKLELLQFSH FIGSRVGFSSGLEELENLREFMLSGRQRQYRDDFVKDVEEQLANHPNPNKPLLRFSLY N</aaseq>

Gene Sequence

<dnaseqindica>7350..9284#3058..3684#113..1168#ctctcattgcgctagctgcctgctgcaacttcctcaaccacagaatctgcacaaatcaaccaagagttgggtgtgtacagtgtgtggagagggagagagagccagggtggtgatggagtcgacggtgctgagccttggcaagtccgtgctgagtggagcgcttggctacgcccaatccgctgtcgcggaggaggtggccctgcagctcggcatccagcgggaccatgccttcatcagggacgagctccatatgatgcaggccttcctcatggccgcggacgaggagcgtgacaagcacaaggttgtcaaggcctgggtgcagcaggtccgtgatgtcgcctacgatgtcgaggactgcctccaggacatggccgtccgtgtcgggaagccatcttggtggcgcaagtgcagcccaagaatgctgcttgagcggcgtcgtgtggctcagaagatgaaggagctaagagccaaggttgaggatgtcagccagaggaacaaccgctaccgcctcatcgatggttctgcctccaaggcaactgatggcatgcagtctaggattgccggtgcaacgaccatgtctgaattggaagaaacaaggcggcaacaggacaaagctaaaatggatcttgttggactgatcaacaccaatgacaaggagcttagagtgatcggggtatggagaaaaaatggtcttctcgatgataaatctattatcagaagggcctatgatgatctcaagatgaggaagtttgagtgctacgcttggatcaggctaaaaagtctttgcaatcaaacatggttgctgcagagcattagcaggcaattgtacgagaattctcttcaagagactagggaatttaaaatggaagcaactgatttagtggaccgaattctacagaagatgggaaacatggaggaagatgatttggtgagtgcatttgagggatatctgaatgagaagagttacttgattgtgcttactgacttatcctctctggaagagtggaataagataaaaatatgcttcccaagcaatgatagagggagccgaatcatattgtgcacagagcatgttgaagttgccagactatgtgtaccgcaagacagtgtacccccagagcacaagaaattgctcgatgatcagattatctatgctttctatgagaaggtaaccttttttttctttttgaaactaaatggggaggtaaattttaaactactaaaatcatctagttagtcagtacaacctagctagttattcatctagctcaacttctaatgtagttaaatttcattcaaacctagaatactagcaaatatacaagatatactgattacttagttggtcccagttaactacaattaccgtcgtagtctcatagaagtcgtctcacacgtcggcgccactttcatccggcccaacatactatagttgacatgctgttacccatgttctatcatcttttctttaaaaaaaatgtatgattggttcttaaacttgtatcaaggtgtcatctaatttcataaacttataaaatacacatttagatataaaatcttggtttaatgtaccacccaaagttcaaagtgcacatgatatggctcgggcgctaaagtggccatccactatagcgagaatattgcatttagactcctccgctacattatctcatatcgactccaccactttcaaattgcactgcgccgctgccctaatcatcgctccatccctaatccgattagggagtggtggaagtcgatttggggcatactgcataatagttgaggccaaatgcaaaattctcgccaccattgacggtcagatcaacaagcccccaattttgccaaaagacctatgcatgttgtcctccaacacatgcctgtcattgggctacttgcgtcttcagcacatacaaaggagaagtgatggtcggtaagatagccctccaaaactgatcgtagttctttcttgtgaaaactctcctttctttcttgcttaacgaggaagaaaaatatgacctagtgtgagaggatactattctctgtccagtgaatctgaaaaactctagttgtttcctaggggattcacctcatattcctcaattctttattaaggagacaaaccggtaatcccgtacttgataaacataaatactccacttatagttctgtgataaatttcatgttaaatttgtagttatccaataaattttgtgttaaatctgtagtttttttatacattatcttaaatctgcagttttgtgataatttaaccaaagtatatgtggttctatgaaatttattccttttatttttcaagttagagatttagagtattacttgtgtcatacaaaaataaaattatagacttgagagttgttagatgttgataaatgtgtcttgataaatacttcttggcccccaacatataatgcatttagcattcaaaatttatcttaaaatatgactactttctccacatgttttctcatatcaactggtcacaacattatccgattcgattttccacttttccttaatagttaatccctaaaaaaatcctaaatatagctatattttaagatggaaagagtagatagataaaaaccctaaacaaacttgttgtcactatatgcatcatggaaaaaattatgaaatttatcatcatgttgcaaaataacttcaactatggaagttttttttaatgcattgagtgtgcaaattttgtggctttgttcatatccctggcctacctaaagctatttctttcattgatccagcaatattgtcaccagatatgtaattcctctgagatccaaaccatacaaacattatttatttagtttttcatagtcaaaatattttaggccttatttggcaggcctcattcccatcccattctccatgggtgggccaggattccatgagggatgggccaagatttgtggcctgccaaaaaaggccttataaataaatttacaagctttaaacacaagaaaaatattgtttttggtaaaggaagggtatatatatacctaacaactcacttgtgtgtagggttctcaagacggaacactcttagtggagccaagttctagctcaaacataaccacgagtaatggtaacaacaatctcacagctaataaaaagcttggtcgcactgagacgatggtatcaaccttggaggaatctcagctcatcggtcgtgcaaaagaaaaatctgacattatcaagctaattaaaaaccaagtgagtcaacaatctcaagtgatctctatttggggaatgggtggccttggaaaaaccgctctagtccaagatatatatcgaagtcaagatgttagcagttattttgatgcacgtgcttgtgttacagtattgcgcccttttaactctgggcaactcattcacagcttagctaagcagtttggaaatgaggaaaagagagatttgtccgaactcttagaaagaaagagctatttggttgttctcgatgatctatgggataccaaggaatgggatgatatggtggcacaatttcccaacaaagctggaagctgcatcatagtcaccacaagggaagagaatattgctaagcattgttcaaaagaaacaactaatgcacatatatacaagctcagcggaatagaaaatgatcaagcactccaactcttcactaaaaaggtacgaatgaaatagcactactacaatgcgctattaacaatttcagttgttattacatatccaaaagaaataaataatatatacgagctcggtgggctagacaataatcaagcacatgatctactcacgaaagaggtactgaaatggtatgccatgcgctgctaattgtttcgcttgatattactgcattttaatcacaattactgagcatgctttgctttggtaaatatcatcatgcacattttgtaagcagaacctttttctatggaaataatcaaataatatagtgatgcaaccatatcatataataaatgtttgtaggccatgtatttcatttttttgctactttcaaccttttctaactttggtaatgcccaaattttggtaggatatagaaagattaggtggagtttgatttgaggctttacaaaattttcgtaaagagttttctagagtaaaaggttccaaaattaccagtagggtagcgatgacaatggtgtgttggttcgtttccttgcaaatattagtaatgtcaaaatttgataaggttgaaaaggcaatatgcacacacacgcacaagttttagtaaagcccgtaatccacaagttttgggattaaagatggaaatcaaatatatataccatctactgtatccaaggttagcgaaaacaaatgtgaacaaaactatgaacaccaatcagaaagttaaagtgatacttgagactattcgaggattatttttaacaggaagaccattcgatcgtttgccaatggaatatttagggtgtgttcactttgttggaaaaaatttggtaaaattatgtagtgtttggtataattagggccttaccaaattttggtagaatattgagtttggaaagttctgaaattacaaagccaacaaattaaacacactattaccaacaaaattctaccaaatcttagtaactccacaactttataccatcaaaattctaccaaaaaacactacccaaccttcttttaccctaccaaaatttagtgataccataatttggcattaccaaagtttgataaagttgaaaaatggcaacaaaactaaatagacccataaatctgataggcttgtgttagtaatagtgtgttttgtatgttgcctttttcagtgttgttaatgctgaagttgaacattgcaacaaagtgaacacattcttacttcataaatcttaagtttggttgttttaaattctcgaaagattctccttttgttgattttaagtaagtgatttcgcttaatcataggattttatctaatccaaaagtgacactacaaaattaaatcgattgtgcacatcacgtatcgcccataccgatgtgtgcctcctaacatgaagaccatatccatatttgacgggcacattgttaggacaaagtcataagtaaatttcaagaatgttgacttattttcaaagggtatggaccttagttagttacatattcaccctcttcttcctccgactctctctctctctctctctctctctctctctctcaaggctagttctgatgaccttgttagccccacctacgagagagcgggggcagagatgatgggtagtaataataatcagtgacaacaaacaggaagtggcattggctcatgtagctcgagcagcaatggtgccatgcaagtagcagggagcaatgcacacaaggttgtgcgaacaactggctgaggaagaaaggggcagttcggtaaaattagcaaatgagattatccctccaactatatgtcaaaagagaaaaggcgatatccttgacatagttgaagaaggataccatccaattacgtggcaaagctgcaatttctcgaagaaagggaaccatatgatatttatttataatacccatctccttaatttattgatatatcttcctcgaatgttgacttgttggacagaaagatcgatgttatgcatcagacaaaatttgtaggagacttacttataatgaatttgccttattattgatcttcaccaaaggctatttattatatgagaaggtctatcagatcccattataagaacttaagtaataaaaactaggagactcaatccttttcattttctttagaatttttagtctctgtagcaaacatgtgtctccttttcgagctatcttcgtaatatgatagatagatatgatagagaacctaactaaagaaaatggaaattaattagacaacttgattgatgaaaagaaaaaacacctaagagatcgaaagtcatgtgtctcgaagccaaacgtgatgtcaacagccctcggttgttaacaaggtggaagagatcaccacaaaacggaaacaaaacatggaagaggtgtagagaattcattaactaactttttttacacgaaggagttcaccttcaattaaccagtagctctagaaaaatcaccaaagagtaaaccagctacaaactccggggctttggctccaaaaacatggtgagacagagtccacggcaacagcgatgaaggaggccagacaatcagccgccttattacaagttctagggcaaacaaatgcaatgaactgatcaaagaaatacttaaaaaagccctaatcttcttgaacagagctccataggggctgcagtccaacgcatgcaatgtaattgctcgtcccaggttggtcgcatctgtttcaacaatgattcttgccataccgagttgcgccactttctccaaagtccaaactattcatcatcgccatagcttcccctgtaagggaagtcccaacccatggtgtccataagtagtgtctatggtgccatgtcaataagacatcacaatagaaactacactctacaacccatggtttcttaaagtgggccattaataaatacatcatctctcttctctaccaatcatatttattcttcatctattatgaaggcattattctctcccaatgcaaaacttgatagtgtctagtgcataggttcttgtgttgaagctgtgtcttgcatgagacccagtttctttctctcttcactctctctcttaattaatatagtgccacataagctaaaaatcctacatggcaatgtagttaatgccatagacaccatcctagatggagggttgggactgccctaatgcgctagcagcatgttcaagattaccagccccccgcctctaggaattcccctgtgtcattcctagcaacaaaaacccatccacctccacatttaccttgtagaatccgactggtggcaagttccatctttgcgctctttcctgtctatcacctcccttcttctttctcatcctctcttgttcagcaagatggaacctgacatcttgaaaaattccatcaattgatagcattatttcccctgcattgattttatttcgaaaataccaccatctccaaagcaagcaaggtaaggaggtattttcattaaaagtccagattctgtttgaagaatcctgccccgtcatgcactgttccagaagcagcctttcattctctagctaacatatgtgcatttacaaaataaatggcaattgtcctcgtcaaaacgtttgaattcattaacttagtacacgcatatgtgcataagtaattaatttaatttatttggcatgcagtactaaaggacttcaaactgtctcactttcaggtattcaaggaaaagacaaatttggatgaacaatatccttacttagttgaacaagcgaatctgatcttgaagaagtgtaatggacttccccttgcaatagtcaccataggtggtttcttggcaaaccaaccaaagactgctttggcgtggaggaagataaatgagcatattagtgctgagcttgagatgaatccagaactcaagaccattagcacagtcctgctgaaaagctacgatggtttaccatacaaactcaagtcatgtttcttgtatctgtccatcttccccgaagaccacaaggttagccgaaaacgtttgatgcagcgatggactgctgagggttacacaacggaggcacgtggcaaatctccaatcgaaatagctcatgacaacttcattgagctcataagtaggagcatgacactaccggttgctcaaaacgcaagtagacctgagggaggaatagactattgccagctacatgatctcatgcgtgaaatcagcatcacaaagtcaatggaggaaaaccttgtacttaggctggagaaaggttgcagctcaaagacacagggcacagcccgtcatcttgccataagcagtaattgggaaggagacaaacatgagtttgagaacacagtggacctgtcccgtgtaaggtcattaacggtgtttggaaaatggaaaccttttttcgtttctgaaaagatgaggatgctacgagtgctcgacttggaagacactgaaggtctagttgatcaccaccttgagcacattggaaagcttgttcacctaaggtacctttctctaagagaatgtcacaacatttgtcacctgccagatttgttgtgtgacttgaggcaacttgagacactagacattagaagcacgtttatagcgatgctgccgaaaaccatcgtgaagcttcggaagctaaaatatctccacgctggtaaaatcggaattgtgggtcagcaaagtatagcagagagaagtctagagctttgtactggagcatgctgcgcatgctacgtacctcgtctcgtgggagacttcaacaggcgtgatgcttgcaactacaattgctgcatccagccccgtgttctcatgatggacttagataatgatttccctatgctaccacgagggagcaggaaactaaaaagcctgcatacactccgacacgtgcacttggcgtggggaaacactgttatacaagagatagagagactcacccagctgcgtaagttaggcgtggtgggcatcaacaagaagaatggtccatccttctattcagccatctccaagctcagccagctagagtcattgtcggtgtgtgcaggttggtgtcaaggcctacatggcacgtcgtcgtcgtcgtcaacctcgcctcctccggagaacttgcagagcctcaagctgcagggtgcgctaggcaaactgccacagtggatcggaaagctccagaatctcgtgaagctgagactgatgtggaccgaactggaggatgccgatgccgccatcaaagtcctcgggacactgccaaggctggccatcctgcgcctgtgggagcattcgttcaacgatcatgtggtctgtctcaacttccgccaggagcagcaggaggccaccgcagtagtattgttcccgagcctgagggtgttggaggtaagtaggatatgtagtcatgaccgcctcgaatcagtgcagtttggaggaggcgcaacccccaagcttgagctgctgcagtttagtcatttcattggctcacgcgttggattttcgtcggggctagaagagctcgaaaatctcagggaattcatgctgagtggtaggcagaggcagtacagggacgactttgtgaaagacgtggaggagcagcttgccaaccacccaaacccaaacaagccccttctcaggttcagtctatataactaacaccgatggatcgatcgatcgatcgagggtgtattgctcgctcgaggttggacggtacgctgcaatcccactataagctttgagctttgagctaatctcttaatcttatttatctacaagtctgagtgttctagttca</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0539400, RefSeq:Os08g0539400