Os08g0542900

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Revision as of 13:10, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0542900| Description = Lupus La protein family protein| Version = NM_001068931.1 GI:115477600 GeneID:4346201| Length = 5425 bp| Definition...")
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Gene Name

Os08g0542900

Description

Lupus La protein family protein

Version

NM_001068931.1 GI:115477600 GeneID:4346201

Length

5425 bp

Definition

Oryza sativa Japonica Group Os08g0542900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27251608..27257032

Sequence Coding Region

27251696..27252037,27253208..27253289,27253945..27254039,27254668..27254739,27254819..27254898
,27254975..27255074,27255655..27255702,27255817..27255885,27256282..27256422
,27256509..27256763

Expression

GEO Profiles:Os08g0542900

Genome Context

<gbrowseImage1> name=NC_008401:27251608..27257032 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:27251608..27257032 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcaggacgacgccccggactccaccacctcctcctcatccgcctcatccgcctccgcccccgccccctccgccgcccgcctcaacgccgccgccccggagttcacccctcgatccgccgcccaccaccaccaccaccacgccaaccctcgccgccagcaccgcgggggcgggggtggggcctaccaccaccaccagcagcactaccagccgcaccaccaccaccagcaccaccagcactggcaacactacggggaggatgagggggacgccgcggcggccggggcggtgggagaaggagggatcccggaggatgtggctcgtcgggtcgtcaagcaggtggaattttacttcagtgatgtcaatctggctacaacagaacatttgatgaaattcatgattagagatccagagggatttgtgccaatgtctgtagttgcatcttttaggaagatccgggagttagttagtgagagatccgcattggctgcagtattgcggacgtcagcagagctggttgtttcagatgatggaaaaagggttagacgtcgagtgctctttactgaggcggatgctgaagaagttcagtcacgcattgttgttgctgaaaatttgcgtgaagagcaccgctatccaaatcttatgaagattttctcagcttttgggagtgtgaaatcaattcgtacttgctatccacaaggtgggattgatggtgctggaacttctactggcaaagcatcaaagattgagatgttgtttgctaataaggtgcatgcttttgtggagtatgaaactgttgaagatgctgaaaaggcagtttctgaattcagtagtgggagaagctggagagatgggattagagtccgctcactgcttggttgcctgaaacaagccatgggtcaaggaagaagaggtggagatgaggtggatgctgcagacgaagatgaccctgaaacaactgaccatccacaagactacgaaacagaggatgcttcccagatttcagaagcacatcttgatcatcaggctgatgatggctaccatgacaaaggcgggatgaggcacgggagagggagaggacgtggtggaagagggcgtggccgtggtcagtactatggccatagccgggatgccaatcatccaattggcactcctccatcgaatcacagtgctcttgctgatcatccttcaaagccaccccctggtcctcgtatgccagatggcacaagaggatttaccatggggcgaggaaagccactcaatcctaccaatgctgtttaa</cdnaseq>

Protein Sequence

<aaseq>MAQDDAPDSTTSSSSASSASAPAPSAARLNAAAPEFTPRSAAHH HHHHANPRRQHRGGGGGAYHHHQQHYQPHHHHQHHQHWQHYGEDEGDAAAAGAVGEGG IPEDVARRVVKQVEFYFSDVNLATTEHLMKFMIRDPEGFVPMSVVASFRKIRELVSER SALAAVLRTSAELVVSDDGKRVRRRVLFTEADAEEVQSRIVVAENLREEHRYPNLMKI FSAFGSVKSIRTCYPQGGIDGAGTSTGKASKIEMLFANKVHAFVEYETVEDAEKAVSE FSSGRSWRDGIRVRSLLGCLKQAMGQGRRGGDEVDAADEDDPETTDHPQDYETEDASQ ISEAHLDHQADDGYHDKGGMRHGRGRGRGGRGRGRGQYYGHSRDANHPIGTPPSNHSA LADHPSKPPPGPRMPDGTRGFTMGRGKPLNPTNAV</aaseq>

Gene Sequence

<dnaseqindica>89..430#1601..1682#2338..2432#3061..3132#3212..3291#3368..3467#4048..4095#4210..4278#4675..4815#4902..5156#gagtccccccaagcaaacccttcttctctctctctctctctcctctcacgcttcgctcgcggccgctcctctctctctccatccatccatggcgcaggacgacgccccggactccaccacctcctcctcatccgcctcatccgcctccgcccccgccccctccgccgcccgcctcaacgccgccgccccggagttcacccctcgatccgccgcccaccaccaccaccaccacgccaaccctcgccgccagcaccgcgggggcgggggtggggcctaccaccaccaccagcagcactaccagccgcaccaccaccaccagcaccaccagcactggcaacactacggggaggatgagggggacgccgcggcggccggggcggtgggagaaggagggatcccggaggatgtggctcgtcgggtcgtcaagcaggtagcgctcccccccacccacctgatggatgatgtgtttactgccttttgccatgctgtttggtgctgattatgaggattggtttggtgtggaatctcaagtttcaaccgataaagcttgatcttttgatcaacgcaagggttagattgggtcgtctatggagtagaaataggcatgtaggaagtgtagcttaacccagtgattgcaagtgaaacgatggaattagtgtgactttacacttctgttgatttgtctgcaagtttgatctttagttacagatgtatgcactagagggatgatgtctatagatatttgttccttaaaactgtttattgcctattattttgcttattcttgtatttctgaaactatgaggataaaaaatattacttcacagatcactggcaccttgattgtcctgtgtgcactagtaaggggctaaggtggaatctaggacgagtaaaacagggaatgtctgttagagattgctatttttagaaaatgcactgtaattctgcacttcttttcttggagaacactatagggtttatagtctatacaaatcagatagggtggggatggcgggaagggtgcatgttgtctttccacatggcgcggtctgctgcatttacgtgtgtgtggggtttgggtcgagtgacatgtctcatgcctgccaacgagcaaatatggaataacaagatatgcatgtttgtgatgtttggcaaacatgatgggcctcagtatgatttattagcgacacggtgtaaaaacgacaaaaccatatcatgtcgtcttgctgaagctcgtaattgctgcatgcatagtaccatgaggagttatactgttttcttttttgaggataataacttaggaaatagaaatagtgcagctctccatctattttatgattgtttctctttgcatctttctgaaggggagaaatggagagagaaatcaattctcttcttttgtattgtttaccttctgcatctttttactttcttattagtttaccttttctctgatcattgaaagtatgatattaacttcgtcttatattaattcctttttttgttgtttattagtgcaatcaagctgttatgggatgcttgatttgcacctatataagtggtacacccttggtttgattgtattttaaaaccttgacaggtggaattttacttcagtgatgtcaatctggctacaacagaacatttgatgaaattcatgattagagatccagagggatttggtgagtcaactgttcaatttcaaatagaccgcctgattgtgctttccaccttcctattttccttttgaaatgagaaccaccataatgttttagggttattctcacttataccttaacaaacctacgacaaaaatcgctgtccaccttcatgtctatatttttctttaaatgtttggtgccagcgataatttcaaatttgtcatgcaatatatgatgataaaattcctgtgaactactgcactacgtattgctaattaggctatttttaattgtattctactgatatagatatctttaacctgggaatgcattcttccgtatgaattgatgcacattgatattactgcagttatgcatgactgttgcaccagcattgatgtttgacaatgttctgctgtaaaaagactactggcacatttagaaatgggcgaatattatgttgaagcattctaatatatttgcaccttttgttgtaccactattggaatctgcatatacttgcttgatataactactgttcaccaaacaacagttgatacttttgagttgcatcatatcattaagtggtgtacatgaatttagcacatgctttcctacacatgatatttgttggctcatattttctgatggcattgacatgtcttctgttttccagtgccaatgtctgtagttgcatcttttaggaagatccgggagttagttagtgagagatccgcattggctgcagtattgcggacgtcagcagagctggtaagcatcttatttaggccctgtttgttttaacttaagattattgtaatctatattattaaatcagattactataagctggattataataagctgacatagaataagctgtgagctatttgtttctctagattattggaggcatctaagggtagtgggtctttagccaccaataatttggaaaatgctcctccagaggagattattagattatactaatctggcttataaatcataattatctacttgtttgtttcagtttactcctaataatccagtttataataatcctaagctgaatcaaatagggccttaatgactttttaatttttttttctttccgatatgcctgttcatcctattgttgacacttgacacagcccacccttcattttaattaaagatgcattatacgttatgaacctttgctcagtaaggaattatatttagtaaacaaattattttttttaataagtgcatgaatataagcgaataaacacacaccttttcatcaatctgtaccatcctaatttaagattcagtttaccaatctcattttcctctcattctgaatggcttctattattctctaccaagatcctaagactatagatcttcctatatacaggttgtttcagatgatggaaaaagggttagacgtcgagtgctctttactgaggcggatgctgaagaagttcaggtcagaatctaattaatcaaataaaatctattcattatatatgtatgggaactgaattttctgttatatgtgtactcagtcacgcattgttgttgctgaaaatttgcgtgaagagcaccgctatccaaatcttatgaagattttctcagcttttgggaggtatgcatcaatgcatgtctttgagcacaaatatatgccaaatgtggtgttgaacacatgatgttctatattgcagtgtgaaatcaattcgtacttgctatccacaaggtgggattgatggtgctggaacttctactggcaaagcatcaaagattgagatgttgtttgctaataaggtaatgtatcatggtatatctaacttctaaaggaacacggaaagtttattagttattgcatatacttgttctagctctgttaataaatatttgacaccatacaagaatgtgtattccaacttcttaatacttgatcactaatacatttactgtttggattgatatgtgcagatgttagcattagatttctcatgggatagtttcacattatggtagcttcatatattcttatttagtgttttaaaaaaaagttctacaaggctgcttacaaggttgcatacatacaaggtacaggtgccctaaccttgtaccgtgtaagctgcatatgtggccgattacaccacataagccctacaaggtggggtgaccacacgaaaccatgtactgttttttaaaacattgcttactatttcatagatagaagtgatgatcaaaagttgcatgttggtgaccttgtccatgtccgaaatgtcatacttgaaaagagggataagcaatgaaatactattttggaaggcatttcaagtttcaacaccagtaccttgatttcgtccctcattttttttggctttacttgcaggtgcatgcttttgtggagtatgaaactgttgaagatgctgaaaaggcagtatgtcttcttgatttctctaaccatttgttttttttttctaggaattattttgaggtgctttggtagttgccatcaacacaatttaaaggaactctgtttttctgtatacaggtttctgaattcagtagtgggagaagctggagagatgggattagagtccgctcactgcttggttgcctggtactttaacggaccctacacaatgcaacttgttctcccttaaccatggactgatttttaaaatgcatttgcgattcacaattgtcctttatgcactacttgtgtttcctgactagatcttagtcattaacatttatatttcattaatcggcaatactgggtggtttgttcattcttgatttagttacttctatatttaactgatgggtaaacattaggtgtaagcttgtttttggtcatttcatcatttatcaacagatatagctcccagaaaaacatgtttgactagcttagtaagatttaacattcctacattactatgcatgttattttatttatttgtaaaatagaagattcttaaatcgttaaacatttgttttcattaattgtcattagaaacaagccatgggtcaaggaagaagaggtggagatgaggtggatgctgcagacgaagatgaccctgaaacaactgaccatccacaagactacgaaacagaggatgcttcccagatttcagaagcacatcttgatcatcaggtactttaaatgatcctctcctgctcaccattattgtgcgccagaatcaagtgtggatattataacgacatgtataaatttcataggctgatgatggctaccatgacaaaggcgggatgaggcacgggagagggagaggacgtggtggaagagggcgtggccgtggtcagtactatggccatagccgggatgccaatcatccaattggcactcctccatcgaatcacagtgctcttgctgatcatccttcaaagccaccccctggtcctcgtatgccagatggcacaagaggatttaccatggggcgaggaaagccactcaatcctaccaatgctgtttaatggcagtggccatgccggtggcagcctgttgccctgttccctcttgcaaatctgatacttgcctcaggttccaaaccgatgaacgccgattaccgttgatactatagttagatacaacatgtgttggttcgttttggtgcaagattctgcagagaaaagttttacctggtacatgcatgtatactggtacagcagtggtgctggcaatgtgaacatgtcttttgatatctggatgctagttaatttagcaaaatatgtagatatagatg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0542900, RefSeq:Os08g0542900