Os08g0544900

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Revision as of 13:11, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0544900| Description = Similar to HMG-CoA synthase| Version = NM_001068945.1 GI:115477628 GeneID:4346215| Length = 4579 bp| Definition = O...")
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Gene Name

Os08g0544900

Description

Similar to HMG-CoA synthase

Version

NM_001068945.1 GI:115477628 GeneID:4346215

Length

4579 bp

Definition

Oryza sativa Japonica Group Os08g0544900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27390254..27394832

Sequence Coding Region

27390448..27390516,27391215..27391321,27391499..27391631,27391868..27392011,27392119..27392277
,27392414..27392487,27392578..27392653,27392777..27392832,27393186..27393273
,27393362..27393502,27393585..27393734,27394262..27394468

Expression

GEO Profiles:Os08g0544900

Genome Context

<gbrowseImage1> name=NC_008401:27390254..27394832 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:27390254..27394832 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagcagcccaacgacgtcgggatcctcgccatggacatctacttccctcccgcctgcgtccaccaggaagcgctggaagcgcacgatggagccagcaagggtaagtacacaattggtcttgggcaggactgcatggcctattgcagcgaggtggaagatgttatctctatgagcttgacggttgttgcatcactgctgaaaaagtacaacattgatcctaagcaaattggccgcctggaggttggtagtgagacagtgatagacaaaagcaaatccatcaaaacatggctgatgcatattttcgaggagagtggcaatactgacattgagggggttgactcaagtaacgcatgctatggtggaacagctgccctgttgaattgtgttaattgggtggaaagtaaatcctgggatggacgctacggtcttgttgtttgcacagatagcgcggtttatgcagaagggccagctcgtccaacaggtggtgctgctgctattgctatgcttattggtccgaatgctcccatttcttttgaaagtaaatatagggcttcacacatggcccatgtttacgatttctacaagcctgatcttgcaagtgaatacccggttgttgatggaaaactttctcagacatgctatctgatggctcttgattcgtgctataggcaatattgtaccaagtatgaaaagatagtgggagaacaattctcgatttctgatgcagaatactgtgtcttccattctccatataataagcttgtacaaaagagtttcgcccgactttatttcaatgacttcatgcgtaattgcagcacggttgataatgatgctaaagagaagcttcagccttttgcaaatttgactagtgaagaaagctaccaaagtcgtgacttggaaaaggcctctcaacaagtagcaaagcatctgtatgatatcaaagttcaaccatcaactctgcttccaaaacagatcggtaatatgtacactgcatctctttatgctgcattggcatctgtgatctacaacaagcatgacagtctggatggccagcgaattctcatgttttcttatgggagtggattgacatccactatgttttcgttgagactacatgatggtcaacatccctttagcttaatgaacattgcttctgtgcttgatgtgacgacaaagcttgagtcaagacatgtgacctcacctgagaagtttattgagacattgaagctgatggagcaccgctatggagcaaaagattttgaaacaagcaaagataccagcttgttgccaccaggaacattctatcttacaaaagttgattcgatgtacaggaggttctatgacaagaaagccgccgagggaaaaatcaagggctgcaacggcattgcaaacggtcactga</cdnaseq>

Protein Sequence

<aaseq>MEQPNDVGILAMDIYFPPACVHQEALEAHDGASKGKYTIGLGQD CMAYCSEVEDVISMSLTVVASLLKKYNIDPKQIGRLEVGSETVIDKSKSIKTWLMHIF EESGNTDIEGVDSSNACYGGTAALLNCVNWVESKSWDGRYGLVVCTDSAVYAEGPARP TGGAAAIAMLIGPNAPISFESKYRASHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMA LDSCYRQYCTKYEKIVGEQFSISDAEYCVFHSPYNKLVQKSFARLYFNDFMRNCSTVD NDAKEKLQPFANLTSEESYQSRDLEKASQQVAKHLYDIKVQPSTLLPKQIGNMYTASL YAALASVIYNKHDSLDGQRILMFSYGSGLTSTMFSLRLHDGQHPFSLMNIASVLDVTT KLESRHVTSPEKFIETLKLMEHRYGAKDFETSKDTSLLPPGTFYLTKVDSMYRRFYDK KAAEGKIKGCNGIANGH</aaseq>

Gene Sequence

<dnaseqindica>195..263#962..1068#1246..1378#1615..1758#1866..2024#2161..2234#2325..2400#2524..2579#2933..3020#3109..3249#3332..3481#4009..4215#gttccacacttccacgagaggaggacgcgagatccgtattcgagtctcatctccatccttcacgcgacgtgctgctccgctccgctccgtcgtcaagcccccgcccccctcacacttcaggcggcgcccgcgcgagccagccacttcgagaagcgaaacgcggaagcggaggggagatcgagagagatcgcgagatggagcagcccaacgacgtcgggatcctcgccatggacatctacttccctcccgcctgcgtccaccaggtgagctttctctctcgcacgagttttgttttttttaaaaaaatcttaaaaaaaaaacaaaatctccgttcgattcgttgtttttttcctctcctgctgcgatgtgatgcgatgctggcgtggcgagcttggctgatccgaggaggcttgtggagatcatggatggtttgtttgttttttcttttttttttcaaatcaaaatttgacaattgtttgttttggggggaaattaccgcggcgggggtttatgggtgatgggtgaaaacctggatttggaggagatggctgagatcgtcaggagtgggattgtcgtaaacgtttcaaccttcgtttcccaatgctttcactttcctagatttgtggatcattagcgcggcggttttttccccatagagtgtgtgaaatcagctctcaactgcattatacctggtgcctggtattcagaaagcgaacagagcatggcatttggtgttgcattagggaagagtccgatgagtttatctactaacaatgcatggataattgtatcaacggataataataatattgtaatattctgcgttggttctagattttatcaatgaatgataatatgctatttatgctgtgttggttctagttttttagagcagattacccttgacagaattttgttacacttagagttgaatgttcatgtgtttaacaaattgctgcaggaagcgctggaagcgcacgatggagccagcaagggtaagtacacaattggtcttgggcaggactgcatggcctattgcagcgaggtggaagatgttatctctatgaggtatctcccttgttaacttgtttgaacaacttatctgttatattgatccccttattttatctgtgttgggtttcacaacagattgaattcacgaagcaataaatatcttcttttcttttacatgcaattctgtagttggtagttgtatgtgaatgctcagaatgaatgttgtttcagcttgacggttgttgcatcactgctgaaaaagtacaacattgatcctaagcaaattggccgcctggaggttggtagtgagacagtgatagacaaaagcaaatccatcaaaacatggctgatgcatattttcgaggtttgttggtttcccccctaactaaaataagaaccccacctaacccagacatgaattttctttttggcttgaaccagatatgcaattatcatattttgaattgatttatttttatctactacctttcctcttgtccagaatctcttgatgaataggcagtttcagcttatttgttttattagctgtacattttagccacagtgattcattattcttaacatttatctcaaacataggagagtggcaatactgacattgagggggttgactcaagtaacgcatgctatggtggaacagctgccctgttgaattgtgttaattgggtggaaagtaaatcctgggatggacgctacggtcttgttgtttgcacagatagcgcggtttgttacccaatatcaccttccagttattttcagttttctcttgcttctgtccatgtgcagctctcctcattcaatggcccattttatgcaactattatgatcaggtttatgcagaagggccagctcgtccaacaggtggtgctgctgctattgctatgcttattggtccgaatgctcccatttcttttgaaagtaaatatagggcttcacacatggcccatgtttacgatttctacaagcctgatcttgcaagtgaatacccggttagaattctattcttgcatgtgcttctctttgtgaatgacaatggtcatttttctcaatcctacactatgctgttggttattcatttcatagtattgtattcttacaatactgttgcatctggacatactgtaggttgttgatggaaaactttctcagacatgctatctgatggctcttgattcgtgctataggcaatattgtaccaagtgagtctaatgccattatccccctgaattgtactacattaagatactaaccttctcaagcaataacaatttgtactatgataacaataggtatgaaaagatagtgggagaacaattctcgatttctgatgcagaatactgtgtcttccattctccatataataaggtatgatgactgaacacctctccaagacaaagcgttttgtcgaatgcggtttagatttgcccatcctgtcctctcaactctcagagaatgcttactgtttcgttgcattatggtttatgacagcttgtacaaaagagtttcgcccgactttatttcaatgacttcatgcgtaattgcaggtctgtaatatccacgccatggctctttcttttactccttacgatgtagtctcttgagctacatatcaaatacttcctccgtttcaggttataagactttctagcattgcccacattcatatagatgttaatgaatctagatataattatgtatctagattcattaacatttatatgaatgtgggcaatgctagaaagttttataacctgaaacggaggtagtactgttatgtggctcttgaggagacttcctgtttttttttttgggtgatacataattcttttttttttaatctgacatgccatggcccctaattgatgtttcttgtctcttttcttttcatgaacattagcacggttgataatgatgctaaagagaagcttcagccttttgcaaatttgactagtgaagaaagctaccaaagtcgtgacttggaaaaggtccattcttatttgttggatgttacttcttgaaatgcttgatgccttgattgatgtaaacgttaactccattctaccaaactttcaggcctctcaacaagtagcaaagcatctgtatgatatcaaagttcaaccatcaactctgcttccaaaacagatcggtaatatgtacactgcatctctttatgctgcattggcatctgtgatctacaacaagcatgacagtctggtgagcttaatgtatttgctatttatggcacacctcatcattttttatcattcctcgtagctaaattatatttcttttataggatggccagcgaattctcatgttttcttatgggagtggattgacatccactatgttttcgttgagactacatgatggtcaacatccctttagcttaatgaacattgcttctgtgcttgatgtgacgacaaagcttgagtcaagacatgtggtatggtcttccattctcacaacccccagccagtttgctaatgtggacttgcagatagaaataattatatgaccatgcgataaagcatattatgatgtacatttgttgcatacatgcggtatgatcggacatggttttggaatttatttccattatggccacgtcgctatttgatgaaagaattggtcaaatgcaattatgcaaatatactgtaccaccaaacctgtcaccagggaaagaaagggcaagggcggtcactattggataggtttacctcaacattttttttcttgggggggggggggggtgttattaattgtttcaagcattttaaaaattgcctttgttaaggatggctacataccactagttgatttgttcgtataaaaagtgatgcaactgtagtttccatgatattatatgtttgctgattgtgaaatgctccgctgtagtcatctctgaatagtccattcgttagtgtgatttctctacagcaagctaacttgttcctttacatgttataatagacctcacctgagaagtttattgagacattgaagctgatggagcaccgctatggagcaaaagattttgaaacaagcaaagataccagcttgttgccaccaggaacattctatcttacaaaagttgattcgatgtacaggaggttctatgacaagaaagccgccgagggaaaaatcaagggctgcaacggcattgcaaacggtcactgattgggtgccaagaatgctgtgagctcacgcgcattattagccatcttgttgctcagtttgatgtatttattcttagagtgctcagtctagatatcttccaataattcattgttcccctcgtgcccctcagcttgtttttactttaagctgaacaataaacctttgtgtagtactgtagtagtactaggtcctagtatccttgtttcctctagctctattgcttcattgttactagctaattccctccccatgctttattgttctcagtaatatcctgcaaaactgttggctgtgtgcatcttatgatgcagacgttgaagatgtaatttttatcttatctaaaaaattcagttaagtcttgagc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0544900, RefSeq:Os08g0544900