Os09g0443000

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Revision as of 07:27, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0443000| Description = Cyclin-like F-box domain containing protein| Version = NM_001069830.2 GI:297609543 GeneID:4347186| Length = 4178 bp|...")
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Gene Name

Os09g0443000

Description

Cyclin-like F-box domain containing protein

Version

NM_001069830.2 GI:297609543 GeneID:4347186

Length

4178 bp

Definition

Oryza sativa Japonica Group Os09g0443000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:17136357..17140534

Sequence Coding Region

17136357..17136587,17136592..17136770,17138402..17138678,17138772..17138933,17139670..17140288
,17140338..17140534

Expression

GEO Profiles:Os09g0443000

Genome Context

<gbrowseImage1> name=NC_008402:17136357..17140534 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:17136357..17140534 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagccgccgccgccgccgcaccgtcacaagaagtgtcggacggcggaggctgctgttcccgggggggaggaggaggaggaggcgaaggacgcgctgatctccctgccgccggacgtcctcgacggcgtcctgacccggctcggcctccgcgacgccgtccgcacctccgcgctctcccgcgcctggcgccggcggagggcgcggcgctggccgccgtcgacggcgtcctcctccgctgcctgccccggccgcgtccggagcttcagcgcatacgtcgacaagctcaccacccgccgcgcccatgactggatcctcgtcctcgcgcgccgcggcgtcgagtccctcgacctcgcgtcgccgatccacaaccacctcgccgtccactcctccgtcttctcctgcgaccgcctcgcctacctcaacctcttcgcctgcgacatcccgccgctcccgccgggtttcgccggattccccaacctgaggagcctaaccctcgaccacgtgtggctgcgagcgggcggggagtaccaactggaggagatcatcgagaattccccattgcttgagatgctagtgttatctggaatcttcatcgatggagacgatatcataaattgggtgattcgagcgcccaatctccagcatctaacgatttgttcgccgaacgattatggatggaaccttttggatttgccacgcctgcgttctgccgtcatcgatttgtgggattatcttggtggccgtgatttcgccgagtttctcggcaagcttcttcatgttaggaagcttcacctctttgtgtcctatcaaccgtcaaatggagctaagatactagagacacttccatgcacctttgacagcttgaagagcttgaagagcttgaagttatacatggacttctgtgaactgcccgcgattttaacgattttttgcttactaaggaatgctccgaatctcgaaaaactcaaaataatgatcactgataacgagcagaaagttgaggcaaatggggtgttccaaaatgcagagtggactggtggcatgtgcgccaaccttcaaattgtacagataacgagaattagttggcttccaaatgaaatgtcttttatagagctgattctctctaaagcaagtcttcttcgcacaatatctgttactcatggtgataaatgcctaatgtctaatgaggatgcgctcagtgagttactaaaatacaaaagagcttcaccccaagctcagatcctgtttaaagggtacaatagtaaagtactaagacagattaggggtaaatttgacatcacgacaacgtcggttacgtcgttgtgttcgatcgtcggtggcggcggcggtggagatcatcttgagggcggagccgccggtggtgaaggccttcttgcggacggccttgtaccccggccacgtgacggcgcggcggcgctccggccgggcgacacggcgtccgtcaacggcgccaccttgacgtccggcgggcgggccgaggaagtatccgagcgatatcctgtcacggtcgcggttgacgacggcgcggtggtatacgctgtggaagcggccgttggtgagtatgcatgtggaagagaggtcgccgacgttgaggacgaagttgcccggaacgatcgccggcaccgccacccaccggtctag</cdnaseq>

Protein Sequence

<aaseq>MEPPPPPHRHKKCRTAEAAVPGGEEEEEAKDALISLPPDVLDGV LTRLGLRDAVRTSALSRAWRRRRARRWPPSTASSSAACPGRVRSFSAYVDKLTTRRAH DWILVLARRGVESLDLASPIHNHLAVHSSVFSCDRLAYLNLFACDIPPLPPGFAGFPN LRSLTLDHVWLRAGGEYQLEEIIENSPLLEMLVLSGIFIDGDDIINWVIRAPNLQHLT ICSPNDYGWNLLDLPRLRSAVIDLWDYLGGRDFAEFLGKLLHVRKLHLFVSYQPSNGA KILETLPCTFDSLKSLKSLKLYMDFCELPAILTIFCLLRNAPNLEKLKIMITDNEQKV EANGVFQNAEWTGGMCANLQIVQITRISWLPNEMSFIELILSKASLLRTISVTHGDKC LMSNEDALSELLKYKRASPQAQILFKGYNSKVLRQIRGKFDITTTSVTSLCSIVGGGG GGDHLEGGAAGGEGLLADGLVPRPRDGAAALRPGDTASVNGATLTSGGRAEEVSERYP VTVAVDDGAVVYAVEAAVGEYACGREVADVEDEVARNDRRHRHPPV</aaseq>

Gene Sequence

<dnaseqindica>3948..4178#3765..3943#1857..2133#1602..1763#247..865#1..197#atggagccgccgccgccgccgcaccgtcacaagaagtgtcggacggcggaggctgctgttcccgggggggaggaggaggaggaggcgaaggacgcgctgatctccctgccgccggacgtcctcgacggcgtcctgacccggctcggcctccgcgacgccgtccgcacctccgcgctctcccgcgcctggcgccggcggtgggagtccctcccgtccctcgacatctctttccccttcccgcaccaggagggcgcggcgctggccgccgtcgacggcgtcctcctccgctgcctgccccggccgcgtccggagcttcagcgcatacgtcgacaagctcaccacccgccgcgcccatgactggatcctcgtcctcgcgcgccgcggcgtcgagtccctcgacctcgcgtcgccgatccacaaccacctcgccgtccactcctccgtcttctcctgcgaccgcctcgcctacctcaacctcttcgcctgcgacatcccgccgctcccgccgggtttcgccggattccccaacctgaggagcctaaccctcgaccacgtgtggctgcgagcgggcggggagtaccaactggaggagatcatcgagaattccccattgcttgagatgctagtgttatctggaatcttcatcgatggagacgatatcataaattgggtgattcgagcgcccaatctccagcatctaacgatttgttcgccgaacgattatggatggaaccttttggatttgccacgcctgcgttctgccgtcatcgatttgtgggattatcttggtggccgtgatttcgccgagtttctcggcaagcttcttcatgttaggaagcttcacctctttgtgtcctatcaaccggtacattctgatgcctccaaatgtttcttgtttttctcttgccagttgataattagtttcctctaaaaaaaataggtgatcattttactttaaaatggttgatgtttaggttgaatcaaaatacttgctcgctgattaaactgcagagttgaatatgtgaaattatatgatttatcgacaacaattatatgatcatgactgttgttggttgcataacctcttgtggataggatattaggatcatgtttgctgggtgacataaacgtagcaaactttctgtgctgtctcctaatctgtaaatattactgtcatacaaagaattgtagatattactgtcatacaaagaattgtagatattactgtcatacaagggattatgtgattgtgcacatattcttatggtgaatatatattggcatccgtatgctttcagtaactcatttgtcttccaacttggtagtccgatggccttttacctttctgatttgctacattagactccttactttcgctctagaaaaaaggtttatcccctagttggatatgtgggctgtgggcctgtgttctccttgacaaattaacaatgtggaacatttccttcaataaagggatatgtgtttttggtcttgtttggacagaagggaaaaaaaacataatatgtcctttgattatttctatccatccagtttcaacttttaagttctgatggagtacctgttttcttcatatctttcagtcaaatggagctaagatactagagacacttccatgcacctttgacagcttgaagagcttgaagagcttgaagttatacatggacttctgtgaactgcccgcgattttaacgattttttgcttactaaggaatgctccgaatctcgaaaaactcaaaataatggtaaggttgaatgttgcctcgcaagttgaatatatgtgcactgtttgaaggttatctctctctccttacaattttttatttctgtttgtgaagatcactgataacgagcagaaagttgaggcaaatggggtgttccaaaatgcagagtggactggtggcatgtgcgccaaccttcaaattgtacagataacgagaattagttggcttccaaatgaaatgtcttttatagagctgattctctctaaagcaagtcttcttcgcacaatatctgttactcatggtgataaatgcctaatgtctaatgaggatgcgctcagtgagttactaaaatacaaaagagcttcaccccaagctcagatcctgtttaaaggtaaatgtagttaatattatttaggaaatttccatcttatacatttgatttgaaatgatattctattacatccttttgtggggttttaaaagttgctgttgcattttgtgttatattttacttttgagtttgcacaatagtatggctccagactgagagttatgctgccctcttaatataatcgataccaggtccctccctggtatccagcgtttcatactcatactacatagtcagacagtgatagcctgcattgcaaactacttcctttttacaaaatggtcaattgaaatttgaatttttactttccataatgtagtttcagatatctatgcagcatagtgaggcagaacttaataattgtccaaaacctcaaactacttttttttaacgaatcggcacgagtgtccccatttgattgaatataatgtcaaacttctctgtgtgtgttgatcggttagttttcgtgggattacccagagcctgataattgtgatgagcatggtggcatggtgagaatacagagcctgaacatgggtatttaaaagagaactattttcataagtataggcctgtttagatcccctggcaaaattttacatcctatcacatcgaacatttggacatatacatggagtattaaatatagacgaaaaaaataagtagttacacaaattgcgtgtaaattgcgagacaaatctttttaaacctaattgtgccatgatttgacaatgtggtgctacagtaaacatttgctaatgacggattaattaggcttaataaattcgtcttgcggtttacagacgaattctgtaatttgttttgttattagacttattagacggattaattaggcttattagacggatactttaaatgtgtgtccgtatatttgatgtgacacactaaaactttacaccctggatctaaacatagccataatgtcaaattggtgtatacaacttgattcctcttgtagtttgacaatgaaagtaataggcactgaggtccaagtcaatttttcatgtgactcgacataggaaatcttagattattcttcactagaatcagaaagtagttgttggaatccaatgttaacacacttcaacaggatcatatgatattttcctcgctccttcggactatgcatgcttctgctacaatttttaagtagtgactaacttctgctgaatgttgttcagtttgcagaaatgtgcttttggtcacatatttgttacctctggttttatatctgttgtggcgagctgcataaacagtatattgactattttccttattatgcaggcaaagcagacggttattaggttagccggcacattttatgaaatgctgaagaaatataaagtcggatcacttgaaccagacagtgccatcgtttgtctgaagcagtcttttgggttagcaggaaatgtcgcctcgaagggatatatattgtttcttctgttacaaatatctcagaaacctgcatgcttatagtaattttaggtcattcgaagatacagtgtagtgcgaaattctactacttatattataaaagggcaacgctccggtgctttatactgaaagtattatactacaagtagaactaatctgaaccgtttattcttaagggtacaatagtaaagtactaagacagattaggggtaaatttgacatcacgacaacgtcggttacgtcgttgtgttcgatcgtcggtggcggcggcggtggagatcatcttgagggcggagccgccggtggtgaaggccttcttgcggacggccttgtaccccggccacgtgacggcgcggtaggcggcgctccggccgggcgacacggcgtccgtcaacggcgccaccttgacgtccggcgggcgggccgaggaagtatccgagcgatatcctgtcacggtcgcggttgacgacggcgcggtggtatacgctgtggaagcggccgttggtgagtatgcatgtggaagagaggtcgccgacgttgaggacgaagttgcccggaacgatcgccggcaccgccacccaccggtctag</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0443000, RefSeq:Os09g0443000