BGIOSGA004504

From RiceWiki
Revision as of 18:30, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA004504

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004504, complete gene.

LocusTag

P0512C01.48

Ensembl Transcript ID

BGIOSGA004504-TA

Ensembl Protein ID

BGIOSGA004504-PA

Length

6579

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:35439004..35445582

Sequence Coding Region

35439004..35439022,35439464..35439642,35440195..35440378,35441147..35441221,35441513..35441622
,35442181..35442399,35442559..35442714,35443185..35443379,35443649..35443721
,35445039..35445169,35445301..35445582

Genome Context

<gbrowseImage1> name=IndicaChromosome01:35439004..35445582 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:35439004..35445582 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGATGACATTTTTGCGCTGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGGTTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGCTTACCTGAGGGCTATTGAAGAAGGTGCGGATTTTATAGAAACGGACATCCTTGCTAGCAAAGATGGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGCAAGGAGTTTTCCAATAGAAGAAGAACCTACGAGGTGGAATGGTTCAACGTTACTGGCTGGTTTGTAGTGGACTTCACACTTGAGGAACTTAAAACACTGAAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAATGGCAAGTTTTCAATTATCACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATATACCCAGAGATGAAAGATCCAGTTTTTATCAACAAGCATGTCAAGTGGGATGGTGGGAAGAAGTTTGAGGACAAATTTGTGGATACCTTACTGAAGTATGGATATAAAGGCCAATATATGTCAGAAAATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCATCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTACACCCGTACACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTATTCCTTGAAACAAAGTTCATTGATGGGTACATTGAGATGGAGCTGTTTGGACAAGTTGTCAGGAACTCAGGATGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTTATCCAGGTGGTGGTCGTCTGCGCGGCGCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGTACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAGCAAGGAGGAGCTGGAGGGCAGGCTGAGGGGGTGGCTGGAGCGGTGGCCCGGCGGCGAGCTGCCGCCGGACCTCGCGAGGTTCGACACCGTCGACGACGCCGTGTCGTACCTCGTCCGGTCCGTCTGCGAGCTGGAGGTCGACGGCGAGGTCGGCTCCGTGCAGTGGTACCAGGTTCAGCTGGAGTAG</cdnaseq>

Protein Sequence

<aaseq>MMTFLRCTIYFLLLLLPHVVFSRPLFPLPSKSNGIEKRPLQTFRPYNIAHRGSNGEIPEETAAAYLRAIEEGADFIETDILASKDGALICFHDVTLDATTDVASRKEFSNRRRTYEVEWFNVTGWFVVDFTLEELKTLKVNQRYPFRDQQYNGKFSIITFEEFISIALDASRTVGIYPEMKDPVFINKHVKWDGGKKFEDKFVDTLLKYGYKGQYMSENWLKQPLFIQSFAPTSLVHASKLTDSPKIFLIDDFSVRTQDTNQSYWDITSDDYLAYISNYVVGLGPWKDTVVPAAKNYTMAPTDLVARAHAHNLQVHPYTYRNENQFLHLNFHQDPYAEYDFWINSMGVDGLFTDFTGSLHRYQELVAPHAKDETANSLLFLETKFIDGYIEMELFGQVVRNSGCKSSAPLPHKRRSRDTTLCCCAHRQQKIAAFAGSRIIFSRHVIQVVVVCAARRRRADIQSETYVLMEPGEEEEFVSKEELEGRLRGWLERWPGGELPPDLARFDTVDDAVSYLVRSVCELEVDGEVGSVQWYQVQLE</aaseq>

Gene Sequence

<dnaseqindica>1..19#461..639#1192..1375#2144..2218#2510..2619#3178..3396#3556..3711#4182..4376#4646..4718#6036..6166#6298..6579#ATGATGACATTTTTGCGCTGTAAGCTATTTTTGTAGGAGTATTTGTCTTAAAAAGTTATATTTGGTAATGTGTCTGAATCTATCCATTTTTAACCTTGAGTTCAGGTTTCTGCAGTACACGATCCCTTAAAACAAAATTAAATGGTTAACAATTTAATTACTGGTATTCAGAGGACTCTGTGACTTTTGTACTTATCACTGATGGTAAATTGAGAACACTTACCTTTTCCTGGATAGAATCTCTGCTTTGACCAGATAACTTTCTTATAACATGTTAAGGCATGGTATCACATATACACATTGAAAAATATTCCTGAGATAACCAAACATGGTTACTAATTAAAAGTTTGGGAATTAGTTGAATTTATAATCTTATTGTGTTGACCTTTTTAATATGTTTGTATTTGCATTCTGCACATGAGCTTGATCCTGTATTTATTTGTCTTGTCATCATTGGCAGGTACTATCTATTTTCTTCTTTTGCTACTTCCACATGTGGTTTTTTCTAGACCACTCTTTCCACTACCAAGCAAGAGTAATGGAATAGAGAAGAGACCCTTACAAACTTTTCGACCATATAACATTGCTCACCGTGGCTCAAATGGGGAAATTCCTGAGGAAACAGCTGCTGCTTACCTGGTACAACTCAGAGATATGCTACATGTACTCCTTTTTTAAAAGAAGACAATGGTGGCGGTGAATCAGATACCCCACTTCTTCCGCATCCATTTTTTATGAACTTCCTAGTTCTTCAATATTACTTGATAGTCCTTCAAAAATCAACATATTGCTATCTTTTGTTTGGTCTTCACAATATAACACAAGAGGTCTAAGATGACTAAATTTTCACACTATGTATACAAGCTAATTTTACAATTATAATTGTGTGAACAATTTCAATTATTCGTCGTTACAAACATTTGAATGGTGCATATATAAAAAAAAGCATTATTTGTTTTGAACAATATTAGGCCATGTTGCTTCATTTTTATTCATAGCAGAAGTATAGGCATTTAGTAATACAAAACACTTCATGCTATTCTATTTGCATGGAATGCAATAGCCTATGTTTACGATTGCAAATTTATTGGATTTGATTCCAATATGTTTCTATCCTGCAATATTTCACCATTGGAAAAAGAATAGGACCATATAAATAATAGAGCACTAAATAATATTTATCTTTCGCAGAGGGCTATTGAAGAAGGTGCGGATTTTATAGAAACGGACATCCTTGCTAGCAAAGATGGGGCCTTGATCTGCTTTCATGATGTAACACTGGATGCTACAACTGACGTTGCCAGCCGCAAGGAGTTTTCCAATAGAAGAAGAACCTACGAGGTGGAATGGTTCAACGTTACTGGCTGGTTTGTAGGTTTGCACATTACAACCAAACCTAATTCCATCCCTCGTTCTTGTAAATGTTTGCAGCATCAAAAGTCAGAAATAGGAACTAATTGTGCATGCCATTTGATTATTTCTTGAGACCTTAGCTTGAACTTATTACAGTTGAAAGTAGTGCATGCAAGATTTTCTTAAAATCATTACCTGTAGTGTTATGCCTGCATTAGCAACTGGTATTGTGCCATTTTCAGATAATGCCATAAACTATCTGGTGTTTGCTACTCCCTCCATTTTAAAATTACTTGTCGTTTTAGGCTTTTAGCTTTGTCCTAAGTCAAACATTTGTAACTTTGATCATCAATTTCTAAAAATTTGTAAGTTTAACATCGTAAGATTTGTGTTTTTAGATCCACCATGAGAAATATTTTCATATATAATTTATTTGTTGTTAAACTAGTTGAATTTCTAAAATTTGATGGTCAAAGATAGAAGTGTTTGACTTAGGACAAAGTTAGTGACAACTAGGGAGTAGCATGATTGGCATAGGAAACATGTATATCATCTTATCTTTGTGATTCACAAGGGAGAATATATCCATATTTACTTCTTCCACTTACTTTTTCTCCCTTTATTTTATGTTTGTCATATCCTTTCCTTTTTCTAAATTAGTTAAAGGTTATACTGGTTGATATATGTTTTTAAACTGCATATTGCTAGGGTGGGACTGATGAGGATGATAAACCTGTGAAGCTATATCTTTTTGATTATTCATCCTAAATATACATGTGTTGATATGCAGTGGACTTCACACTTGAGGAACTTAAAACACTGAAAGTCAATCAGCGATACCCATTCAGAGACCAACAATACAATGGTATGCGGTCATATACCCTTTGAGTATCTTTTTTCTTTTGTATCTCTTTGTATTATCATGATTGTCAGACACAATATCATTACTCTCTTCTATAGGTCATGTTGTTATAATTTTAAAGATCATTCACGTGCATTCTTTTTATTGATAATGCGATACTGCTGGGCTTCATCTTTACCAGTCTTTCTACAGATGTGGAAGTTAACTGCCAATGTTTGTAAGAGTGCACATTCTGGTGGCATATAATTGTGAATAAAGGATTAACACTATTTTTTTTTCTATCTGATGGTGCAGGCAAGTTTTCAATTATCACATTTGAAGAATTCATTTCTATTGCCTTGGATGCAAGCAGAACTGTCGGAATATACCCAGAGATGAAAGATCCAGTTTTTATCAACAAGCATGTAAGGTCCCCCATCCTCAAGAAGCAACATTTAAAATTCACATCATTGTCAAGTGTTTTCCAGCACAAATTTGTGCTTACATGTTATGCAGAAATTTTCTGTGAAATGATTTTAATATGTCTAGCTGCATACCTTTGCAGGTTAATCAAATAATTAAAATATGAATCATGTGGATTTTAATGTATTGCTTTGAATTTCATGTTTTAGTTCTGTTATTTTTAAGAGAATAGGTAATTGCATTACCCGGCTTTGCAAGAAAACCAAAGGAACAAACATAGTGTTTTACACATGAACAGCAAAAGAAAACATGTTTTAGTTCTGTCAAGAATTTCTTTTTGTCATAAATCTTGAGTTAATATTTAATGCTATTTTTCTGTCTGTAAGAATATATATTGCATGTGAATAATGACGCAGCAGCAGCTGATATGCCTTTTACCTCAAAATACTTTAATTTGGTTTAGATAAGGTTTACAATTCACAAAAAAAAACTTTATTCATAACAAATTTCCAGTTTCGGATGTGCCATAAGTGAGGAATTTTGTATTCTACTCTTGATAGGTCAAGTGGGATGGTGGGAAGAAGTTTGAGGACAAATTTGTGGATACCTTACTGAAGTATGGATATAAAGGCCAATATATGTCAGAAAATTGGCTGAAGCAGCCGTTGTTTATACAATCTTTTGCTCCTACTTCCCTTGTACATGCATCAAAGTTGACAGACTCTCCCAAGATATTCCTGATTGACGATTTCTCAGTGAGAACACAAGATACAAACCAGGTACTAATCTTGTTAATAAAATGTTTCATATCCATTGACTTCTTTCTTTATTCTGGAAAAGGTTGATATCCATTGGTTTCAATGTTACAAAAATATAATGAATCTGGCTGGATAATCTACATCTGAATGCATATAACATATGTTTTTTTTCTCATGCAGTCATACTGGGACATCACTTCTGATGACTACCTAGCATATATTAGTAACTATGTTGTTGGCCTTGGTCCATGGAAAGATACGGTTGTTCCAGCAGCCAAAAACTATACGATGGCACCGACTGATCTTGTTGCAAGAGCACATGCTCATAATCTTCAGGTATGGTATTTGTTTATATTCTTTACAGTTATCTGGAATAGCATGTTTCCATGAGCTATTGCCTACTTGTGATATAATCCGTACAAGATGCGATAAGTTTTATGCATTAATTTCCATACTTCAGGGTTCATAACACCTTCAGCATATTTTATGTTTAAATCTATTATGGTTGATTTGAATAACGAGAAGAATGGAAACATTATCGTCATTGTCCACTTTTTGGTCTCATGTGTCATGCAATGAGTATTGCACATTGAGTAACTGAACAAAATGCATAGCATGTCTTTAAATTTCACATGACTCTTTGTACATCATTAAGGTGCATTAACTTTCTGCTGTACATAGTTCAGATAGATCGATTTGTTGCCCTACTTTATGTTGCCTTTTGTTGGCCCATAACATGCATACTTCATGACAAAATTGGCAGGTTATTTTGTATCTAGATAATTAAACTCTTGCTGTCATTGCAGGTACACCCGTACACATACAGGAACGAGAACCAATTCCTGCACCTCAACTTCCATCAGGACCCTTATGCTGAGTATGATTTCTGGATAAACAGCATGGGGGTCGATGGATTGTTCACTGATTTCACTGGATCCCTGCACCGTTACCAGGAACTGGTAGCTCCACATGCGAAGGATGAAACTGCAAACAGCCTCCTAGTAAAAATTGCTCAAATGATCTCCCAATATGAAGGTTTCTGATCATGTTTTCCATTTTTCCGTTAATCGACATGCTTATATACACGCATTAGTGATCAAGGGTGACCTTGAATGTTACAGAACAAAAAAAAAAGAAAAAAAATACTTGTTTTCTGGTGGCTAGCAGTTAGAACGGATTGTAGACACCTCTATAACTATAAACCCCTGAATTGCGGGGAGAAATTTCTACAGTTGTAATAATTGTCTTTAAAACAGTTGTATCTGATTAGTTCCTTGAAACAAAGTTCATTGATGGGTACATTGAGATGGAGCTGTTTGGACAAGTTGTCAGGAACTCAGGATGTGTGCATACCTACCAGTGCAGATGTGAAAAGCAACAACAGGAAGTTGGAATTGGTATTGAGAGTTGAAATGCAAACTGGAAATCAGTAATGACAGTGAACACAGCTGACCTCTGCTATAATAAATAGTCGTCTCCGGTCTGCCACTTGTGCAGTGGCGGAGACCGGAGTGATCAGGCAGCCGATGTGTGGTCGGTAGTCGCATTTCAAGTCCCTTTCTGTTCTCACTGGAAGGGAACCAAGTCTTCTCCTTTTGATAACTGGTACAACTCACCAATCTCAATGCAGATGGTAGTGAGTAAAGAAGAGCCATGAAGGATAAGGCATTCAGCTAAAGCTTTTGAAGGGAAGATTTCAGGCCACACAACTTGAGCAGAGGAAGGATGGAAGCGGCGGCGGCGGTGGCGGCTGCCTCCACCGGCGAACTTTTGACAGGTAACCGCAGCTCTACCCACTCCTGTCCTCTGTCAAAAGCTACGAGAATGCCATGATGCAACACTTTGATCTTCTTCGTTGTGACCCGGGTCAGTTTGATAGTACTAGATTAGTAGATTGTGCTGTGAGCTCCAGTGTTAGGTGATAAGATTTCTGAGAATTTTTTTTATTAGTATCTTGAATTGGTCATCTAATCAACTTCTAGAGAAGGAATATGTTCATGGCAATAGAATATTGAGTTCTAGGGACGACGACTTTGAAGGATAACGTGCCAAGTGCAGCCAATATTTCTTTTCTTTCTCACACCCCCTTTGACCAGGACAATCTAGCTAAACAAAACCAATATGCTCCAGTCCTGCAGTTCAAGTAGAACATGACTGCATAAACTACATGTCTTGGAATTTGGAACAGCAACCACTAACTAAAGTTCAGTCCTAGAGTCTTTACCAAACTACTACTACTACTACTACTACTACTACTAAAAACTCTTACTGAAAAATATCATGGGTACACACCTCACGGTATAATAGTAAATACTGAAATATCTTGGAAAAAGCTTGCTCTTTTCTCCCCAACTTTAGCACCGGCGCCCCATGCATCAGTCTATCTTTGAATCGAACAACCTTTTGAAAAGAAAAAAAAAATCAACTCCCATGTCTTCTTTTATTATTTTTGATAACGACTTCCATATCAAATGCTCCCGAGCTTTTCCACCAACAGTCAAAAGCGTCTTGCTGTTACAGTTGCTGCTACTACTCCTTCAGTTCAGTCGCCTGCACTGCCTACCACTACCGAAATCTTGCAATTTTCAGTGTCAAAAGCTTGTTCCCTCCAATACAGGCAAAAGAATTTCAGTGTCAAAAGCTTGTTCCTTCCAATACAGGCAAAAGTTCAGCGCCTCTACCCCACAAGAGGCGATCGCGAGACACTACGCTCTGCTGCTGCGCGCATCGCCAGCAGAAAATCGCAGCATTTGCAGGCTCTCGCATCATTTTCAGTCGCCACGTTATCCAGGTAAAGTCGTCAGTCTCACTGCGGCTACCGGCCGCCGGCCGGTGAACCACCGTAGCGGTCAGCGTGGGGGCTCATCGGTCTCACCGGCGAACTGCTTGGTTTTTGTGTGTGTGTGTGCGTGTGTGTTTCAGGTGGTGGTCGTCTGCGCGGCGCGGCGGAGGAGGGCGGACATCCAGTCGGAGACGTACGTGCTGATGGAGCCAGGGGAGGAGGAGGAGTTCGTGAGCAAGGAGGAGCTGGAGGGCAGGCTGAGGGGGTGGCTGGAGCGGTGGCCCGGCGGCGAGCTGCCGCCGGACCTCGCGAGGTTCGACACCGTCGACGACGCCGTGTCGTACCTCGTCCGGTCCGTCTGCGAGCTGGAGGTCGACGGCGAGGTCGGCTCCGTGCAGTGGTACCAGGTTCAGCTGGAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004504