BGIOSGA004569

From RiceWiki
Revision as of 18:30, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA004569

Description

cDNA clone:J013157H06, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA004569, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA004569-TA

Ensembl Protein ID

BGIOSGA004569-PA

Length

5020

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:36458844..36463863

Sequence Coding Region

36458844..36458900,36459759..36459869,36460180..36460242,36460923..36460956,36461487..36461609
,36462205..36462267,36462364..36462457,36462545..36462590,36462719..36462786
,36463156..36463204,36463441..36463506,36463777..36463863

Genome Context

<gbrowseImage1> name=IndicaChromosome01:36458844..36463863 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:36458844..36463863 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGGGAGGTACGACCGGAACCCCTTCGACGAGGACGACGTCAACCCCTTCGCGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCGTTGTTGGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAAGGGGCAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGA</cdnaseq>

Protein Sequence

<aaseq>MAGRYDRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEPGFYNDRGATVDIPLDSTKDMKKKEKELQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLAFSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFYFIGFGLFCLESLLSVVVIQQVYMYFRGSGKAAEMKREAARGAMRSAF</aaseq>

Gene Sequence

<dnaseqindica>1..57#916..1026#1337..1399#2080..2113#2644..2766#3362..3424#3521..3614#3702..3747#3876..3943#4313..4361#4598..4663#4934..5020#ATGGCGGGGAGGTACGACCGGAACCCCTTCGACGAGGACGACGTCAACCCCTTCGCGGTGAGCTGCTGGGTTAGGCTGTAGCTGGGTCGGGGGGCTAAACCCCCCCTCCGCGTCGCAATCGCGCCTCCTCCTTGCTTCATCTAGGCATGGAGATGCTTGTCCTCGCGCCTGTGTGGATGGGGTAGTCGAGCTGCGTCCCGGATTGGCATGTGTTGTGCTGGTTTTCTGGCCGTGGCCGCTTCGTCTGGTCCTGCACGCGGCACGCCATGTGGGGTGCTTTGGATCAGCCTGAGTTGTTGGCGCTAGGGTTAGTGATTTAGGATCCGCTGTTAGGGGGTTGGACTTGGATGGCGCGAATACGGCCTTTTTTGCTTGTCTATTTGCTAGCTGATCGCGAGGCGTGGCAACTTTTCCCCTTGTATTGTTATACATTTTCATAGGAGAAATGATGCTCGGATTGAAAATTGGCTCTTAGGTTGTGTTGGGACGTTATGTTTCTGGTTTTACGAGGGAATATGTGGTGCAATCGATGTGTATAACTTGTGAAAATGGTCGGTCTACTCTTAGAATTATTGGAAAATATCCGTAAAATGGGGCAGTTCACACTTGTTTGGTTCAGATCGTCTATAACATTAGGAGATTGAAGATTGTCTCTGCCAGTATAAACATTTAGTGTCGTAAGCCTGCAGTCAGTTTACTCTCAGTTTGCTGGATATGCACGTGTCAGCGAGTCCATAATCATGTGAATTGTGTGTATGCGTGCACATGCTCCATCTAGGATTTCTAAACTGTCAAATTTTGAGCTTTCGGCCAATAGGCGTAAAAAGGGATAATAGAGTTGGCTGAATATTCTAATTTTAGCAGCCTCCTTCAACTATCTGTTTGTTTCATTTTTAAATGTACCCTGTTCTGCAGGGTGGAAGTGTACCTCCAGCTTCCAACTCTCGGATGCCACCTCTTCCTCACGAACCTGGGTTCTATAATGATCGTGGTGCCACAGTGGACATACCTCTTGATTCAACCAAGGTACTTGTATTTCCATTGAGCGGTAATACTACGTGCTACTATATTTACAAGTTATGTTCTGTACCTCAGCGTGAGAAAATCATACTGTACTTAGCTCTTTCACTCTGATATTATTACTCTGTTAGTGTGTAACAACAGTTGCATGCTTCATTTTTTGTTATCTTATCTCTTTAAAAGGCTGAAGAACACAATTAATCTAGTAATGATGGTTTCACTATTCCTTGGTTTGGATGTTTGATACCATATATTCTTTTGTTGCTGTATTTGTGGTTGGTTGCTTATGCATTGAGTATGTTCGTATGTAATTCAGGACATGAAGAAAAAGGAGAAAGAACTGCAGGCAAAGGAGGCTGAGCTAAACAAACGGGAAAGCGTATGTGCCTTCTGTAGTTATGCTTGAAACTTGGAATTTTCAATTGATCTTTTCATGAGCAATGTGATTTTTAACCAATGTTTGATGAAGTAAAAAACTATTCTAATGAATCAAGTTGTCAACTTCCCCTGGCCAAAGTCCTAATTCCTAACCTTTTTCCTATGATGTATTGGGAAGCACCTATATATTGTGTTAGTATTGAGTATTGAACTAGTAACCATTATGCAATGTGAAAGATATTTAGCTGGCATGGATTTGACACAAAGATCCGGCACCCAATAGACCTCGCTGATCTAACCATTAATTGAATCATTGACATTGCACAATTGGTTTGAAATGATGAACAAAACATGGATATCTATACACTCAATTATAGCACTTTGAAAAGAAGGATGGCTGTTTTTTTAGATAAACAGAAGGATACCAGCGTGCTAATGCAAACTAACATTATCAAATGATTTCATCTAGATATCTCCTCTTTTCATAAAATATTGCGCATGAGAATTACGTGTATAGAATGCTGAATCTGTGAGTGTGCTGAGTTTTACTCATAGAGTAAAAATTTGATCCAACAAGTTTCACATGATTGGAGGTTAAAACACCCTAGATTTGCGTACAAGCATGCTCTTGTATTTTCTTTAAATACACCACCTGATTTTTTGTGATTCCCTGATACGCAGGAATTGAGAAGAAGAGAAGAAGCTGCATCCAGAGGTATATTTTTTTCTCGCAGCTGAGTACGTGTAATCTTTTTGTCTTTGTGTTTCTAACAAAAAATATTCGAAGATAGGAAACAGTTGTTCATGATATTTGTGTCGATTGGTTAATTAGGAAGTTGACTAGAAAACTATAGCTAATTTTAGATTTAGAGCCTGAGACTTAAGTTACACTTTGCAATATAATGAGATTTGTAGGCAAGTATCCCTTGTTGTACAATTTAGAAATGCTCCTGTTTATGCTATATTACTCCCTCTGTCGCATAAAAAACCAACCTAGTACTGGATGTTTCACATCCTATGATCCTAGTACTACGAATCTGGACATATCTCTATCCAGATTCGTTGTACTAGAATGTGTCACATCCAGTCCTAGATTCGTGTTTTTTGGGACGGAGGGAGTACATTGTGTTCGTCTTTCTTGAAAAGGCTATTCTTGCTAATTTTGTGCTTATGTTTGTTCTGTTGCAATCTATTTTCCATTTTAGTTGTTGCTTCTGCCTTTCAACTCTTTCTTTTATTTTTCAGCTGGGATTGTCATTGAAGAGAAAAACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCGTTGTTGGGTAAGTGTTAGTTTTAGTTTTAAGTTTTAACTCTCTTTTTGTTCCCTCTTGTTGGGAAAGCTGTCACAAGAACTAAAATACCTGGTGGAACCACAATTCTTTATATCCTTTTGCTTAAACATTGTGAATAAAATACTGCCTGAATCACTACATTTACTGTCCAATCAATGAATTTCTGCTGAGTCAATGCCAGAAGTGAGTAGTGACATGAGAAAAACGTGCCTACTTTGAGACATTTTGATATCAATGAACTTCTCTAATCTTGACTTATATATCCAATTAAGAGATTCTTTTTTAAAAAAATAGAAGTTGCAACCTGTGTCTTTTGAGAAAAATAGTTATTATCTTCTTGGTGCAGTAATTATGTAAGCCTAATAAGCATAAGCATGTGGTGTCTACCCTGTTTTGTAGCTGGGCTAAATGTCTTTCTGTAAAAAGATGTTCAAAGCAACGCTAACAATACTTGGCATCTTGTAAAAAGAAGCACTATTTAGTGGACTGAATTTTGGTTGTGAGAGCTAGTACCTATTTGCATGTTGGTGTAGCATTGCTCTACAAAGCTGCTTCTTATTGTGCAAACTTTGATGTCATGCAGGATTGGCGGCATGTCTTTTCTGGAACATAATTGCAACTACAGCAGCATGGATTAAAGGGGCAGGTATGGCTGACTGAGTACCTTACTATATATTTATCTTATGGATCAGCTGCCATCTGCACTGACACTTCAAACTAATCCTGCGGTTCAATTCAATAGGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAGGTTGTGAATATACTTGTGTTTTTGTTATTTCTGCACACTATTTCTTCTTATATTTGACATAGTGTATTGTTACAATGTATGTTGCAGGACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGGTAAGACCCTTACCTTCTGGTAACTGTAAGGTTAAAATGATCTAGTATAAGATTAATGGTTTGCCACACTATTGGTTGCAAAATTGCAGATATTCCGTGCAGTGCTAACAGTGTTTGCCCCCTTTCAGATCCATATACTGTTCTGCATCTGGTCTGCTGTGGCTCCCCCATTTCCTTTCAAAGGAAAGTCTCTGGCGTAAGTGTTCTGTTATTTTATTTAAGTAAACATACATTTTATTTAAGCAGCAACATTGGAGCACTGGATAGTGTCTTAGTGGCTATGACTTAAAAGTGCTTTGAGACTTTGTTATTCTTCAGTTTTAGCATATATATTAGTATTTGGCTCATAGAGGTACCTGTGCAACAGTTCTAGGTTGCTTTTACGTGGCATTTGCATAGTTATTAGGTGATGGTGTTAATTGTTAGGGTAATACCTGGATCACTGCTATTGATGCTCTAAATTGTTACAAACTTGTAGCAATTCAACTTGCAGGCTGTCCATTTTCTCTACTTCAATTTATAAATACCACTTCTCTAATTGCCTCTCCCTTTTTTTTTGCCACAGTGGGATTTTGCCGGCTATTGATGTCATAGGAAACAATGCTATTGTGGGGGTAAGTCTCACTGTTTACTTAATGTTTTTCTTCTAGATTCAAGTTAATTTGAGATATCAGGGTTAGTATCTTGGGAGGACCCTATTTGCATTTTTTTAACAGACCTTTTGCCTCAGTGAGTAAGCACTGCCGCACTGGGACTCTGGGAGTTCGTGATGCTTTGCTTAATTTATTTGATTGGCATGTCTCATACAATTGATTAAGTCATCAACATTGTTCACACTTTCTTTCGACAGATATTTTACTTCATTGGATTTGGACTGTTCTGCCTTGAATCACTACTCAGCGTTGTTGTCATCCAGGTGAGTTTTATAAAACTTGATCTTAGCCAAAGCCAAATAGTAACACCTTGGTGTCTGTTCAGCAACACTCCTTCATTCTGCCGTTCATCATCATGCGTCATGCTGTGCCTTCAGAATATATACATTTCTATTTGCATTGATGTCTCCACTCCCAACTAGAATGTGCTGTCCCCTAAGATTTTGTTCTTGTTGCAATAAAATTTCCGCTGCAATGCTGTCTTCATTTTCTCCTGGGAGATGTCATTCTGAACTTGGCCGTTTGAAATGCAGCAAGTATACATGTATTTCCGTGGAAGTGGGAAGGCTGCTGAGATGAAACGTGAGGCAGCTCGTGGTGCTATGAGATCGGCCTTTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004569