Os08g0566100

From RiceWiki
Revision as of 13:13, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0566100| Description = Protein of unknown function DUF239, plant domain containing protein| Version = NM_001069075.1 GI:115477888 GeneID:434...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0566100

Description

Protein of unknown function DUF239, plant domain containing protein

Version

NM_001069075.1 GI:115477888 GeneID:4346356

Length

5408 bp

Definition

Oryza sativa Japonica Group Os08g0566100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:28443376..28448783

Sequence Coding Region

28443472..28444029,28444308..28444361,28447860..28448024,28448103..28448627

Expression

GEO Profiles:Os08g0566100

Genome Context

<gbrowseImage1> name=NC_008401:28443376..28448783 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:28443376..28448783 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaagcggcggcggcggtggcgccggcagcggtgctgctcgtcggacccgccgctagcagtggctgctgctgcgctcctcctcctcctactcgtcgtcgtcactgcggcgccggtggtggacgccgccgctgctggccgccacgtggtccagaggcatctggacaggatcaacaagccgggcgtgcggtccatccacagcgcggacggcgacatcatcgactgcgtgcctcgccacaagcagcgcgcgctcgaccatccgctcctcgccaaccacaccgtccagacgcagccgtcccagatgccggcgtcggcgtctctccttgaccggcgccagcaattaagccggcgggcgtggcagacgtggcaccactcgggccactgccccaggggcacggtggccgtccgcaggaccgccgccgcggacgtgcagcgcgctcgctccctcgccctcttcggccgcaagaagcagatgaggagcccgctgccggcgcccgacgtcgtcaccggcaacggccatgagcacgcgatcgcgtacacggcggcggaggtgtacggggcgcgggcaaccatcagcgtgtgggcaccggagatcgacgaggccaatggcttcagcctctcccagctctggatcctctccggctccttcaacggctccgacctcaacagcatcgaggccggatggcaggtcagccctgagctgtatggggacaacaggccgaggctcttcacctactggacaagcgacgcttacgaggcgacggggtgctacaacgctctgtgcccggggttcgtgcagacgagctcgcggatcgccatcggagcctccatctcgccggtgtcgtcggtgggagggccacagtacgacatgacgctcctggtgtggaaggaccccaagctcggcaactggtggctcagctacggcgacggcgccggcggcctcgtcggctactggcccgccgagctcttcacccacctctccgaccacgccaccatggtcgagtggggcggcgaggtcgtcaacacccacccgcccggctccgcccacaccgccacgcagatgggctccggccacttcgccgccgagggcttcggccgggccgcctacttccgcaacctcgagacggtggacgccgacaacagcctcgccgcggtacccctcgacgccatccagacaatggcggaggacgccggctgctacgacatccgcaaggcctacgacgacgacgacggccgaggcggatggggcgcacacttctactacggcggcccaggccacaatacggcctcttgcccctaa</cdnaseq>

Protein Sequence

<aaseq>MAKRRRRWRRQRCCSSDPPLAVAAAALLLLLLVVVTAAPVVDAA AAGRHVVQRHLDRINKPGVRSIHSADGDIIDCVPRHKQRALDHPLLANHTVQTQPSQM PASASLLDRRQQLSRRAWQTWHHSGHCPRGTVAVRRTAAADVQRARSLALFGRKKQMR SPLPAPDVVTGNGHEHAIAYTAAEVYGARATISVWAPEIDEANGFSLSQLWILSGSFN GSDLNSIEAGWQVSPELYGDNRPRLFTYWTSDAYEATGCYNALCPGFVQTSSRIAIGA SISPVSSVGGPQYDMTLLVWKDPKLGNWWLSYGDGAGGLVGYWPAELFTHLSDHATMV EWGGEVVNTHPPGSAHTATQMGSGHFAAEGFGRAAYFRNLETVDADNSLAAVPLDAIQ TMAEDAGCYDIRKAYDDDDGRGGWGAHFYYGGPGHNTASCP</aaseq>

Gene Sequence

<dnaseqindica>4755..5312#4423..4476#760..924#157..681#agctagctgaggtcagtagctaagctcctctgctcatgccccatgctattactatagcagcaggctgcccatcccccacgcatccgatccccgctcgcggtcggagctagcaacgatcgagctgaccttctctcttctctatctactgatagatcgatggcgaagcggcggcggcggtggcgccggcagcggtgctgctcgtcggacccgccgctagcagtggctgctgctgcgctcctcctcctcctactcgtcgtcgtcactgcggcgccggtggtggacgccgccgctgctggccgccacgtggtccagaggcatctggacaggatcaacaagccgggcgtgcggtccatccacagcgcggacggcgacatcatcgactgcgtgcctcgccacaagcagcgcgcgctcgaccatccgctcctcgccaaccacaccgtccagacgcagccgtcccagatgccggcgtcggcgtctctccttgaccggcgccagcaattaagccggcgggcgtggcagacgtggcaccactcgggccactgccccaggggcacggtggccgtccgcaggaccgccgccgcggacgtgcagcgcgctcgctccctcgccctcttcggccgcaagaagcagatgaggagcccgctgccggcgcccgacgtcgtcaccggcaacggccatgaggtacgtacagtgcgtcgatcgatcgtacgtcgtcggtccaattagttaacgatgcatgcgattgggaacctacgacagcacgcgatcgcgtacacggcggcggaggtgtacggggcgcgggcaaccatcagcgtgtgggcaccggagatcgacgaggccaatggcttcagcctctcccagctctggatcctctccggctccttcaacggctccgacctcaacagcatcgaggccggatggcaggtccctcctcctcctcctccatccctactagctcaaactcattaataatttgcaattaacctagcttgcacctcgctcgctcacacctatgcatttttcatttgcactcactccatggcggctccatgctagctactctagccattggagcagtataggagtaattcgtggtggtcaacacccacccaccacaccacatccacatgcgcgcatcagttcttagatcagctgtaattaatcagcggaggcacatgccgtcataaatgcatgtcccggtccatccaacatcatatcatcatttacttagggcatgtttggtacagctccaactcctaaatttaactccaggagttgggtctggagtggagttgtggagctgcctaaacccagctccacaactccagttcattttatgagagagctccacccaactccactcccagttttggtggagctgaaactatttggctgagctccagctccagaaggggtgaagctggagctggagctgtgccaaaaaggcccttactgtttaccactccattccatatagtttactccattccagtaaactctactcctcgatcgtagtacgcactagtctgtcctcctcctccgggggtaattatattacttcgatcatacatgtactagtactgatcttgtttatttgaacgacactactgctcttgttaatacaggacttctccggggtaatctatctattatattattaagacatattattaagacagctcaaaaaaaataccacgttcaccgtagaagtctagaaattaccacgttaatcggagaaaaagaaaaaaaattcgaccgcttgatcattgatagcctatattttaatggctgagatttaattaaattttgagaagattagacttgtttcacgtagacggacataccaggcactataaaccagacatacatatcagacacggattgacatgtgcagtagtaataggacaccaatacggattgacatgtgcaggatttttagaatttgtattatgtgtagtatacggattaacagctttgaaaggaggcaccacgtttgctgtgggggttagaaattcccacattaatcagaaaaaaaagaaaagaagagtctaagtagaaatacaatttaaaaatagctgaaattgaaagaggagtccatataataacccgatacgagattaatcgaaattcggaataaaaataaaataaaatccgaaattataaaagaaaagaagagtccaagtagaaatacaatttaaaaataattaaaattcggaattaaaaataaggtatattgatagaagagtccatataggaacccaatacgagattaattaatattcgaaataaaaataaaaaaaatccaaaattagcaaaaagaaaagaagagttcaagtaagaatacaatttaaaattaactaaaattcagaattaaaaataagcaatattgaaagaagaatccatataagaaactcaatacgagattaattaaaattttgaataaaaataaaataatatccaaagttagaaaaattaaaagagagttcaggtaagaatacaattttgaaacaactgaaattcaaaagtaaaaaataaaaatattaaaagaaaactatacggtattaattaaaatttgaaaaaaataaattctgaagttagaaaaagaaaaaagatttcagttaggaatagtatttataaataactaaaattggtgataaaaaataaagactattgaaaaaaaagaccatctaaaacacatgacgagataaattaagtaccaggcctataaaggagtaaagtggtggcggttgatacgacatataaaaactgttaataaaacaccaaatagaatcctaatgacgattaaaaggtggggcggcaggcagcccgtgaagcaaacataaaaggcggttgccgagacttctataaagtaaaaaaaatagaccccattgataatcatatccgacttttaaaatctcaatgacaataaaaaggagaagcaacgggtggggtgtatagcagtatagttgcagaaccgccgacggttggtgggactttaaaaaataaaaactgaattccaacgatagttatgtttgatttttagaatcccaatgacaataaatagtaggcagcggatgggccgtaaagaagtatagtggcatcgtttgacgggacttttaaaatttataaaaaattaaacccaacaggacaataaactctaaaaactaaaggtccaatttttaaagatttagaacttctaaaaagtaaaaaaaacaatgataatcatatttaattttaaaatgtcaatgacaataaagaagggatgcagtgggcgagccatgaaggagtacaatagcaaagctgctgacggtttggcgggacttctgtaaagtaaaaaattgaatcccgaacgataattatgttcgatttttaaaatcccaatgaaaataaagagggaagactgtggacgtgtcgtagaggagtataatgacagcgtttgacaggactacccaacaagagaataaactctaaaactataagatccaattttttaatatttcaagaaaaatgaatagaaatagtgatagatcgagtaagcaaataaaaaaaagatataacaaaagtaagaggtagtaactggtgtgacttttaaaaactatataattagaaatagagagacgataaggtttggtctttcgaagttttaagacaacgagatatttatttaataaattttaagtaaaatcatactgaaaaatatatgattttgtttgggggctagccgcgcaattgcgcgggccacccagctagttatatattactagttcatatacgagctagtatggtagaacctctgttcatattcgttgtctgatccatcgtagtaacattttgggacggaggcagctagtagtatgtactacatgcatcagctagcgacagtgatcgttcactctagcttaattagcttactcctttagctactctccttccattcccaggctcaccgctataggaaggctttggctttttcagactctccctgcaacggcaatgcgtaggactaatgatcctcgtctaacaccattcattagctagcgctactataattacgagtacatacagccatcattcattgcaagcacgcatgatagagcactgtcatcattatgattcatgtcaatatgcaaggtaaaactggagcataggcatggtttagttttcaactttttcttcaaacatttaacttttttatcacattaaaatttttctacatatataaacttctaactttttcgtcacatcgtttcaatttcaatcaaacttctaattttagcatgaactaaacacatccatagtactatatatactcctaggagtattaattcatactagtagtagtattgagcagagctgagcatatatataattggatctaaatctgaatctgaagcatttgcatgtttccttccttgtagtcaggtcagccctgagctgtatggggacaacaggccgaggctcttcacctactggacagtaagccgatcgatcgactagctaatctaagagagtgtttgggaactagggagtaaactttagccctttttttaaaaatataagtccctactctagagacttatatttttaagtttagcccctctctcctaaacaccccataaatcaactactactaattaatccaacaaatatatatatatatatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatgtatgtatatatgcagagcgacgcttacgaggcgacggggtgctacaacgctctgtgcccggggttcgtgcagacgagctcgcggatcgccatcggagcctccatctcgccggtgtcgtcggtgggagggccacagtacgacatgacgctcctggtgtggaaggaccccaagctcggcaactggtggctcagctacggcgacggcgccggcggcctcgtcggctactggcccgccgagctcttcacccacctctccgaccacgccaccatggtcgagtggggcggcgaggtcgtcaacacccacccgcccggctccgcccacaccgccacgcagatgggctccggccacttcgccgccgagggcttcggccgggccgcctacttccgcaacctcgagacggtggacgccgacaacagcctcgccgcggtacccctcgacgccatccagacaatggcggaggacgccggctgctacgacatccgcaaggcctacgacgacgacgacggccgaggcggatggggcgcacacttctactacggcggcccaggccacaatacggcctcttgcccctaagcgcttattaattaattacctcatccaatattcatcatcacgtctccatctgtaatgtcgtcatgcaattcgatccatatcctcctcggctcctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0566100, RefSeq:Os08g0566100