BGIOSGA004785

From RiceWiki
Revision as of 18:32, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA004785

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004785, complete gene.

LocusTag

OS01G0844800

Ensembl Transcript ID

BGIOSGA004785-TA

Ensembl Protein ID

BGIOSGA004785-PA

Length

6528

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:39747879..39754406

Sequence Coding Region

39747879..39748496,39749380..39750920,39751529..39751670,39751806..39751913,39751998..39752210
,39752297..39752407,39753239..39753433,39754056..39754230,39754369..39754406

Genome Context

<gbrowseImage1> name=IndicaChromosome01:39747879..39754406 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:39747879..39754406 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGTGGCGGCGGCGGCGATGAGGGAGAGCTGGAGGACGAGCTTGATGCCCTCCTCGGAACCGGTGGCGCTGGCGCGCGTCGGCGAGGTGAGGACGCGGGAGAGAGGGAACGGGAGCTCAACATGTTCAGGAGCGGGTCGGCGCCGCCGACTATAGAGGGTTCGCTGAACGCCATCAGCGGGCTGCTCCGCGGCGGTGGAGAGGCAGGCGTTACCGTTGCAGCGATTCCCGACGCTGAGACGTTGAACGGGCATGGTGGTCTCCTCTCGGAGGATGAGCTCCGGGCTGACCCGGCCTATCTATCCTACTACTACTCGCATGGCAATCTGAACCCAAGGTTGCCACCGCCGGTGCTATCCAAGGAGGACTGGCGGTCCACACAGAGACTGAAGGCGGGGGTGGTTGGAGGAATTGGTGACCGAAGGAAGGTATCGCCGGAGGAGACTGGACATGAGCCGACGGTGGGGAGGCCTGTGTTCTCGCAGAATGTTGGTTTTGATCAGGAGGAGGCTGCAAGGAATGATGTAGGTGGTGCTGCAGAGTGGGTGGATGGTGGAGGTGATGGGCTGATTGGTTTGTCGCTTGGGCGGCAGCGCAGCTTTGCTGATATCCTTCAGGACAATATTGGCCGCAGAACTCCTGCTTCAGAGCATCCCTCTCGTGCAGTTAGTCGCAATTCTTTTCTTGACAATCAGGAACTACTAAATTCTGCTGATAGCCAGTACTCCATGCATAATGATATTCTAGAAGCACAACGTGCTGTCGGAAATGTGCAAAATGTCAGTGGCCTTCCCAGTATTAATGCATCCACATCTCAAACTTTTGCATCTGTTCTGGGTTCATCTATTTCAAGGAATGCCACACCAGATTCTCATTATGTCCCTAGGGTCCCTAGTCCTGGCCTTCCACCTGTCGGTGTTAGGATTAATTCTAATGAGAAGAAGCTGAATTGCTCATCATCATTCAACACTGCATCTTCAAAAGCAGTTGAGCCTGATGATATTTTAGCTGCAATATCAAACATGAACATGTCAAAAGATGGTACTTTGGGTGACAGTAACAGCATTAGTCAATCAAAGTTCCAAAGTGAGATAAGTGACCACCAGAATATTTCTCTTGATCCAAAAGCTCTCCAAGTTAATAAGAATCAGCATTCGCTGATGTTGGAAGCTGATACTGATTATTTGGGTATACCACCAATTTCACAACCTTCAAATCCTTCCTTTTCTGATATTAACAAGAATGTCTCAGGTTTAGCGAACATAAGAAATTCTACTAACACACGTATAGATGGACACGCGGAGATGCAAAGGTCTTCTACTTTGTCTACTCGGTCATATCAGAAGTCCCCAACATCTTCCAATGTGAGCCCAGGTGGTTCTCCTGCTCAACACCAGAATATTGACAATATAAATTCAGCCTTTTTGAACTATGGACTCGGTGGGTATCCACTCAGCCCGGGTTTGCCTTCTATGATGATGAACTGTATGGGCTCTGGCAATATGCCTCCTTTGTTCGAAAGTGCAGCTGCTGCATCTGCTATAGCTTCACTCGGGGCAGATTCGAGAAACCTTGGTAACAATATTTTGTCGTCACCTACCTTAAGTCTATCTGATGTGCATAACCTTGGCAGAACTGGTAACCAAACAGCCACAGGTCTTTTGTCGCCTCTTTCTGATCCATTTTATGTCCAGTACTTGAAGGCAACTCAATATGCAGCACAAGGAACTGCCAACTGCAGTGATCCTTCCTTGGAAAGAGGTTTCATGGGTAGTCAATATGGTGATTTAACTGCTGTTCAGAAAGCTTATATTGAAGCTTTGCTTCAGCAGCAGAAACAATATGGAATGCCACTTGGTAAGTCAACCACGTCAAACCATGGCTATTATGGCAATTTGGCTTTTGGCATGGGCATGGCATACCCTGGAAGCCCTTTGGGAAGTCCTGTTGCTTCTCCATCTGGTCCTGGCAGTCCACTTAGACTCAGTGAGCGGAATATGAGATTTCCTTCTAACTTGAGAAACTTGGGTGGCTGGAATTCTGATCCAAGTGGCTATATGAATGATAACTTCCCATCTTCACTATTGGATGAATTCAAAAGTAATAAGGCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGCGCTGACCAATACGGAAGCCGTTTCATACAGCAAAAACTTGAAACCGCAACAGTTGAGGAAAAAGACATGGTTTTTAAGGAGATCATGCCTCAGGCTCTCTCGTTGATGACCGATGTATTTGGGAACTACGTGGTGCAGAAGTTCTTTGAGCACGGGAGTGCAGCACAGCGTAGGGAGCTGGCTGATCAACTATTTGGACATGTGTTAGCTCTCAGCCTTCAGATGTATGGATGCCGAGTTATCCAAAAGGCAATAGAAGTGGTTGACCTGGACCAGAAGACAAAAATGGTTACTGAGCTTGATGGCCATATCATGAGATGCGTGCGTGATCAAAATGGAAACCATGTTATCCAAAAATGTATTGAATGTGTACCGGAAGATTCGATTCAGTTTATCATCTCAACATTCTATGGTCAAGTTGTTCCATTATCCACTCATCCCTATGGCTGCAGAGTCATACAGAGAGTACTGGAGCATTGCACTTATCCAAAAACACAGGAAATAGTCATGGATGAAATATTGCAATCTGTGTGCATGTTGGCACAAGATCAATATGGAAATTATGTTGTTCAGCATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTATCATTATTGAAAAACTAGCTGGGCAGATCATTCAGATGAGCCAACAGAAATTTGCCTCAAATGTTGTTGAGAAGTGTTTAACATTTGGTGGACCTGCAGAGCGGGAAGTTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGACTTGTGATGATCAGCAGCGTGAGTTGATCCTGTCACGAGTAAAGGTTCATTTAAGTGCACTGAAGAAATATACATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAA</cdnaseq>

Protein Sequence

<aaseq>MGGGGGDEGELEDELDALLGTGGAGARRRGEDAGERERELNMFRSGSAPPTIEGSLNAISGLLRGGGEAGVTVAAIPDAETLNGHGGLLSEDELRADPAYLSYYYSHGNLNPRLPPPVLSKEDWRSTQRLKAGVVGGIGDRRKVSPEETGHEPTVGRPVFSQNVGFDQEEAARNDVGGAAEWVDGGGDGLIGLSLGRQRSFADILQDNIGRRTPASEHPSRAVSRNSFLDNQELLNSADSQYSMHNDILEAQRAVGNVQNVSGLPSINASTSQTFASVLGSSISRNATPDSHYVPRVPSPGLPPVGVRINSNEKKLNCSSSFNTASSKAVEPDDILAAISNMNMSKDGTLGDSNSISQSKFQSEISDHQNISLDPKALQVNKNQHSLMLEADTDYLGIPPISQPSNPSFSDINKNVSGLANIRNSTNTRIDGHAEMQRSSTLSTRSYQKSPTSSNVSPGGSPAQHQNIDNINSAFLNYGLGGYPLSPGLPSMMMNCMGSGNMPPLFESAAAASAIASLGADSRNLGNNILSSPTLSLSDVHNLGRTGNQTATGLLSPLSDPFYVQYLKATQYAAQGTANCSDPSLERGFMGSQYGDLTAVQKAYIEALLQQQKQYGMPLGKSTTSNHGYYGNLAFGMGMAYPGSPLGSPVASPSGPGSPLRLSERNMRFPSNLRNLGGWNSDPSGYMNDNFPSSLLDEFKSNKARSFELAEIASHVVEFSADQYGSRFIQQKLETATVEEKDMVFKEIMPQALSLMTDVFGNYVVQKFFEHGSAAQRRELADQLFGHVLALSLQMYGCRVIQKAIEVVDLDQKTKMVTELDGHIMRCVRDQNGNHVIQKCIECVPEDSIQFIISTFYGQVVPLSTHPYGCRVIQRVLEHCTYPKTQEIVMDEILQSVCMLAQDQYGNYVVQHVLEHGKPHERSIIIEKLAGQIIQMSQQKFASNVVEKCLTFGGPAEREVLINEMLGTTDENEPLQAMMKDQFGNYVVQKVLETCDDQQRELILSRVKVHLSALKKYTYGKHIVARVEKLVAAGERRIGLQAQYPS</aaseq>

Gene Sequence

<dnaseqindica>1..618#1502..3042#3651..3792#3928..4035#4120..4332#4419..4529#5361..5555#6178..6352#6491..6528#ATGGGTGGCGGCGGCGGCGATGAGGGAGAGCTGGAGGACGAGCTTGATGCCCTCCTCGGAACCGGTGGCGCTGGCGCGCGTCGGCGAGGTGAGGACGCGGGAGAGAGGGAACGGGAGCTCAACATGTTCAGGAGCGGGTCGGCGCCGCCGACTATAGAGGGTTCGCTGAACGCCATCAGCGGGCTGCTCCGCGGCGGTGGAGAGGCAGGCGTTACCGTTGCAGCGATTCCCGACGCTGAGACGTTGAACGGGCATGGTGGTCTCCTCTCGGAGGATGAGCTCCGGGCTGACCCGGCCTATCTATCCTACTACTACTCGCATGGCAATCTGAACCCAAGGTTGCCACCGCCGGTGCTATCCAAGGAGGACTGGCGGTCCACACAGAGACTGAAGGCGGGGGTGGTTGGAGGAATTGGTGACCGAAGGAAGGTATCGCCGGAGGAGACTGGACATGAGCCGACGGTGGGGAGGCCTGTGTTCTCGCAGAATGTTGGTTTTGATCAGGAGGAGGCTGCAAGGAATGATGTAGGTGGTGCTGCAGAGTGGGTGGATGGTGGAGGTGATGGGCTGATTGGTTTGTCGCTTGGGCGGCAGCGCAGCTTTGCTGATATCCTTCAGGTTTGTCTCGATTACCAGTTGTGACCTGGTGGATAATTCTTTGTATGACGTTGCTGCTGTGAGCTACTGGTGGTAATTATTGTGCATGTTAATATTTTACTGGCTTATGTTGGAATGCTGAATTTAGTCAACAGCAAACACACAATGGATTATCACGGATAGAATTTTGCAGTTTGTTGCTTCATGTTTTTGTTAGCACTGGGTTTTGGATCCACTTTGTTTGGCAGGCTATTCCCTTGTTTCTTCATGTTATCCATTTTTAAGTTGGATATGTCATGGGAAAAAGATGCAGCTGTCCCATAAGAAGTTTTGAATCAATGAATTGTTCCAGCTCGAGTATAATTATTGGCAAAGCCACTGGATGAACTTTAAGCCAGTTGTTGGAATCCTGTAATGTCAGCTCTTGAAGTCTTGTGAGAACACTGACTTCATTTCTGATCTTCCTGATCATCCGATAGTTTTTATGTAGTTTTTAGTATACCCGAACAACATTGTGAAATTATGCACCTAATAAAGCATGCCATTGAAATTACACATTTCTAAAGAGGGAAGTTCTATACACTCATCAGTGTCATGAATGCTATTTTACCTTTTAATACTTTTATCTTTTCGTCATTTAATAGTGCAGTAAATTTGTGTTTAGTTTCTGCTGACTTCGGTGAATTGCATGTTTGATTGAGGAGTCATCAGACATCAATTGGTTTGATCTGTCATGGGTTCAAAACTTCCAATTAGCTTGGATTTATTTTATTCTATTGTCTTTGGACATAATTGATCCCTTGTAACGTAGCTAGCATTTTCTATCTTTGATAGATAGATTACTTTGCAATTACTTCTCAAGCTCTATGGTTTTTATAACCCTAGAGTATTTTTCTCGTTGCAGGACAATATTGGCCGCAGAACTCCTGCTTCAGAGCATCCCTCTCGTGCAGTTAGTCGCAATTCTTTTCTTGACAATCAGGAACTACTAAATTCTGCTGATAGCCAGTACTCCATGCATAATGATATTCTAGAAGCACAACGTGCTGTCGGAAATGTGCAAAATGTCAGTGGCCTTCCCAGTATTAATGCATCCACATCTCAAACTTTTGCATCTGTTCTGGGTTCATCTATTTCAAGGAATGCCACACCAGATTCTCATTATGTCCCTAGGGTCCCTAGTCCTGGCCTTCCACCTGTCGGTGTTAGGATTAATTCTAATGAGAAGAAGCTGAATTGCTCATCATCATTCAACACTGCATCTTCAAAAGCAGTTGAGCCTGATGATATTTTAGCTGCAATATCAAACATGAACATGTCAAAAGATGGTACTTTGGGTGACAGTAACAGCATTAGTCAATCAAAGTTCCAAAGTGAGATAAGTGACCACCAGAATATTTCTCTTGATCCAAAAGCTCTCCAAGTTAATAAGAATCAGCATTCGCTGATGTTGGAAGCTGATACTGATTATTTGGGTATACCACCAATTTCACAACCTTCAAATCCTTCCTTTTCTGATATTAACAAGAATGTCTCAGGTTTAGCGAACATAAGAAATTCTACTAACACACGTATAGATGGACACGCGGAGATGCAAAGGTCTTCTACTTTGTCTACTCGGTCATATCAGAAGTCCCCAACATCTTCCAATGTGAGCCCAGGTGGTTCTCCTGCTCAACACCAGAATATTGACAATATAAATTCAGCCTTTTTGAACTATGGACTCGGTGGGTATCCACTCAGCCCGGGTTTGCCTTCTATGATGATGAACTGTATGGGCTCTGGCAATATGCCTCCTTTGTTCGAAAGTGCAGCTGCTGCATCTGCTATAGCTTCACTCGGGGCAGATTCGAGAAACCTTGGTAACAATATTTTGTCGTCACCTACCTTAAGTCTATCTGATGTGCATAACCTTGGCAGAACTGGTAACCAAACAGCCACAGGTCTTTTGTCGCCTCTTTCTGATCCATTTTATGTCCAGTACTTGAAGGCAACTCAATATGCAGCACAAGGAACTGCCAACTGCAGTGATCCTTCCTTGGAAAGAGGTTTCATGGGTAGTCAATATGGTGATTTAACTGCTGTTCAGAAAGCTTATATTGAAGCTTTGCTTCAGCAGCAGAAACAATATGGAATGCCACTTGGTAAGTCAACCACGTCAAACCATGGCTATTATGGCAATTTGGCTTTTGGCATGGGCATGGCATACCCTGGAAGCCCTTTGGGAAGTCCTGTTGCTTCTCCATCTGGTCCTGGCAGTCCACTTAGACTCAGTGAGCGGAATATGAGATTTCCTTCTAACTTGAGAAACTTGGGTGGCTGGAATTCTGATCCAAGTGGCTATATGAATGATAACTTCCCATCTTCACTATTGGATGAATTCAAAAGTAATAAGGCCAGAAGTTTTGAACTTGCTGAGATTGCCAGTCATGTGGTTGAGTTCAGGTATACCTAGTCGTGTACTTCTGCAATACTGATATGAGTTTGAATCATACTAAAACCCATGAAAAAACATCCAATTACAAATAGGATGAAATGGTCTCCAAAACACAACTGATCACTAATTTTTATTGCAACATGTTTATAATTGGTAACTTAGAATATTTGGACAGCACCTTTTATGGCAAATAAAGATGCATGTATAATGTCCAATTGTCCATGCATGCAATGTAAATGTTCATTGAGATATTATCAGCTAAAATTTTTAGTAACTTTTTACTGCATGCGTCTGAAAGTCACTTTTTTTTTTACTGAGGGAGTATCATCAAAGCATTCTGTTATAGTATCTATCAAAACATTATATTATTTTATTCTCGTCCACTAATTAACTTGTCAACAAAAGGTGAAAAATGGAACTGCATCTTGTTTTTCCATGGTCTGTTGCTCAAATGTAATTCACATAACTAGTCATTCAAGCTTGCAGTCATCAGAGCATCTAGTTTGTGTACCACTGCTTCACTGATAAATAATGATTGTCGACTGACTAATCCTTTTTAGTTATTGATGCATTCTAACTCTTTGAGCTGGTTGTGATGTTCACTTTGATTATGCAGCGCTGACCAATACGGAAGCCGTTTCATACAGCAAAAACTTGAAACCGCAACAGTTGAGGAAAAAGACATGGTTTTTAAGGAGATCATGCCTCAGGCTCTCTCGTTGATGACCGATGTATTTGGGAACTACGTGGTGCAGAAGGTTTTTTTTTTTTTTTTCTGAAACTTAGTGGTGCTTCTCATTAGGGAGCTGGGCCGACCATTTTTTTTCTCATAGTACTTTGTCTTTTAAGGTTTGTTTAGCAGCGTCATGACTTAACCTGTGTTTTCTACATAGTTCTTTGAGCACGGGAGTGCAGCACAGCGTAGGGAGCTGGCTGATCAACTATTTGGACATGTGTTAGCTCTCAGCCTTCAGATGTATGGATGCCGAGTTATCCAAAAGGTACTGCATGGCTTGGCTCTGTTTCTTTTTTGTGAAAAAAAATATTCTTATCTTTCAATGATATTTATATTCACATTACTGAAGGCAATAGAAGTGGTTGACCTGGACCAGAAGACAAAAATGGTTACTGAGCTTGATGGCCATATCATGAGATGCGTGCGTGATCAAAATGGAAACCATGTTATCCAAAAATGTATTGAATGTGTACCGGAAGATTCGATTCAGTTTATCATCTCAACATTCTATGGTCAAGTTGTTCCATTATCCACTCATCCCTATGGCTGCAGAGTCATACAGGTTCACCATTGAGTTCTTACATTTATATGCGGTTCTTCTGTCTCTAATATTATCTTGTGTAAACTCACAATTTCTTTTGTATTCAGAGAGTACTGGAGCATTGCACTTATCCAAAAACACAGGAAATAGTCATGGATGAAATATTGCAATCTGTGTGCATGTTGGCACAAGATCAATATGGAAATTATGTTGTTCAGGTTTGTATCCTCTGGAACTATTTTAGTCCATACTACTTTTTGGCTTTGATGTAGCATTCTAGTGTTCTTTTCTACTCTGCAAGACTTAATGGTCACGGACTTGACATTTTTTTGCTTTAGTGGCTTGTATGAAAAACGGACATCGATCGTTTCAGATGTATTTAATATTTATGACTTTGTTTTGCTTCTACAGTGAGGTCTTATTTTTCTTCAAGGAATAGAAACATGACTTAAGAGCTGGGTTTGCAACACCAGTTTTGAACTTCTGGAATGTATGAGTTATGCAATTATTCCTCTGTGCTTGTCTAAAATGATTTCACAATCAGTTATAATAGATTTATGCTATCCACACTGAACAGGACAAGGATTCTGAACTTTATACATTCAAATAGGTTGCCTGTGCTGATCATTTTCATTGGATACTGAGTTGCATGGTGTAGGGTCTAACATGTACAGCAATGATTATGCCTAATCACATTTCTGCATTTCATGTCACTTTATTTACATGAGTTAGAATTAGGGATGAAAAATGTGATGGAAATTTCTAACCGAGTACCGTTTCTGTAAAAGTGGTACCTTTTCCAATTCTAGCCATATATAAAATTTTATTTTATTTTCTAGTCTGTCAACGTCATATTGATTTCGCTACTAAAATAGTTAAATTGATAAATATAGAAAATTCCTGATCAACTGAGAATTGTTTCTGTAGAGATGATATTGTTTATGACCGTTTTTCATCCCTAATTAGAATCAATTGGTCATCCATATTACTCTAATACCTTCTTTTAAGTGATCATATGTATTGATGACATCCCATTTACAATTGCGCAGCATGTTTTGGAGCACGGGAAGCCTCATGAGCGATCTATCATTATTGAAAAACTAGCTGGGCAGATCATTCAGATGAGCCAACAGAAATTTGCCTCAAATGTTGTTGAGAAGTGTTTAACATTTGGTGGACCTGCAGAGCGGGAAGTTCTTATAAATGAAATGCTCGGAACTACTGACGAGAATGAGCCTCTTCAGGTTTTCATTATGATATTTGTGTTTTATTGGTGTCCAATTATCTCATGGATTAGAGCTTCATATTTTTCTGGGGGCAGTAGGGCAATTCAATGCGCCTTGAAATAATTTTTTTTAATTTAACATGGTTTTTTAGGCAATTATTTATGAGATACCATGTTAGGCTCGGTACTGCATTGTGAAATTGTGATTACCATATCTTCTCGCACTTGGACTCGCATGGCAAAACTTTTATTCACCGTAGCACTTTGTCAAGATTTCCAAAAAAGATATCAAGCTTTTCTAGAAAGCTATGTAAAACTCATTTGTCAAAAACATGGCGTGCTGGATTGATCTTGAACGTGCAAAGCTTATTGAAGTATTAAGCTGAATTGCTGAAGAACTGTGTTGGTGTAACTGACCTCATATAAGATGTGAATTACTTTCTGTGTGGTGTTATTTTTCCGATGGTTCAGCGTTTTGCAGATTTTAGTCAGATTTCATATTTACTAAATCATAGACTTGCCTTTGCTGAGCTTTTCTTTTCCCCCCGGAAAAGTTGCATTCAACATTCTGATCTCTCTGTTTTTTTGTTTTTGTTTTTGTTTTTTTTTGTGTGTTTTTTTTTGAAAAATAACACTTGCAGGCCATGATGAAGGATCAGTTTGGTAACTATGTTGTACAGAAAGTACTGGAGACTTGTGATGATCAGCAGCGTGAGTTGATCCTGTCACGAGTAAAGGTTCATTTAAGTGCACTGAAGAAATATACATATGGGAAGCACATAGTTGCCCGGGTAGAAAAACTTGTTGCTGCCGGTGGTAAGCTTTTGTGGACATCTTCACTGAAAAATTATTGAAATAATTGTCTTGAAACCTTGGTATTTTTAGCCTCCCTGTGTTGTCTGGTTATATTTATCCTTTTTAACACAGTTTTCTTTTTTCAAAATTTAAATGCAGAGAGGAGGATTGGGCTTCAGGCACAATATCCTTCATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004785