BGIOSGA004961

From RiceWiki
Revision as of 18:32, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA004961

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004961, complete gene.

LocusTag

B1099D03.58

Ensembl Transcript ID

BGIOSGA004961-TA

Ensembl Protein ID

BGIOSGA004961-PA

Length

3209

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42401917..42405125

Sequence Coding Region

42401917..42403229,42403316..42403505,42403586..42403618,42403696..42404313,42404418..42405125

Genome Context

<gbrowseImage1> name=IndicaChromosome01:42401917..42405125 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:42401917..42405125 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGAAGATCTCCGAGCTCTCCCCCGAGTACCGGCAGCCGCCGCCGCACGCCGGCCTCATCGCCGACCTCAGCAAGGCCGTCTCCGACGTCGAGTCATTCGCCGCCTCCGCGACGGCCCCGGAGAAGCTCGCCGCCGATCTCCGCCGCATCCTCACCAGCCTCGCCTCCGCCGCGTCCTCCTCGTCCTTCACCGAGTCGCTCTCGGTCCAGATATGGCGGCTCGGGACCCGCCTCTGGAACGCGGTGGTCGATCGCGCCAACTCCGCCGCCCTCGCCGGGGGTCCCGCCGCGCTCGCCGTGGAGGCGGAGATCCGGCAGGCGGCGCCGGAGCTCCTGCTCCTCGCCGGGATCCCCAACGGTGTCCCCTCCGCGGCCGCGAAGGTCGCCTCCTTCTTCCACCGCTCCGGCCTGGCCTGGCTTGACCTCGGCCGCGTCGACCTCGCCTCCGCCTGCTTCGAGAAGGCCACGCCGCTGGTCTCCGCCGCCGCAACGGAGGATCGGGGCGTCCTGCTCGAGCTCAACCTCGCGCGTGCCCGCGCGGCGTCGGACGCGGGCGATCAAGCCCTCGCCGTCGCGCTCCTGAGCCGGTCCAAGCCCCTCGCCGCCGCATCGCCGGAGGGTGCCAAATCCCTCGCCCAGGGGTACCTCTCCATCGGCGAGGCCACGCTCGCCGCGAAGCACTCGAATCCCGCCGTCGAAGCGTCCACTCTCTTCACCGAAGCACTAGATCTCTGCGAGAAGGCGGCCTCTCCTTCCAGCTCCAGCCCAAGGACTCCCCCTTACGGCGGCGCCACTCCTAAAACCCCAAATCTAGAGGGGCTCAAGAGGCGATGCCTCCGCTTCCTCGCTCTCGAGCGGCTCCAAGCCCAGGACTACGAAGGCGTGCTGCGTTGCATCCGGGTCTCGAGGGCATCAATGGGGCTGGAGGAGGAGCACCCGAGCATCGGGGTCATGGCGATGCGCGCGTGGATCGGAAGCGGGAACATGGCGGAGGCCGACAAGGAGCTCGAGCGGCTGATGGCCAACGCCTTAGCAACGGAGAACTTGTGCGTGTCGGCGGCAGAGGCGTACCTCGCCGCTGCGGGGCCTGAGGCTGCACGCAAGGTGCTCATTGCGCTCGCCGCGCGTTGCCGCGCCGGAGGTGCTGCTGCTGCAGTGAGGGTGGTGAAGCAGGTGATCGACGGTGGTGGCGGGGGAATTGGGCGTGCAAGGGCCATCGCCGAGCTCGTGTCGGATGAGAGGGTGGTCGCCCTGTTCGATGGCCCCGGGAACACCCATGAGCGTGGCACAATGCATGCACTGCTGTGGAACTGTGGCACAGAGCATTTCCGCGCGAAGAATTATGATACCAGTGCGGACTTGATTGAGAGATCGATGCTTTATGTGTCTCGTGATGAAGAAAGCAGATCCCGCCGTGCAGATTGCTTCCGAGTCCTTAGCATTTGCCACATTGCCCTTCAGCATCTTGATCGAGCCCTCGAGTTCGTCAATGAAGCCTACAAGGTTGAACCCAATATCAAGTGTGCTTTTCTGAAGGTTAAGATTAATCTGCAGAAGGGGGAGGAGGACGAGGCATTCAAGCAGATGAAGACGATGGTGGGCTGTGTTGACTTCAACCCTGAGTTCTTAACACTCACTGCTCATGAAGCTATGTCCTGCAAGTCTTTTGGTGTGGCAGTTGCTTCGTTGAGCTATCTTCTTGGCCTCTATTCTGCTGAGAGGCCAATGCCAATGCCTGAGGTTGCTGTTCTGCGCAACCTTATTGAGCTCCTCTCTCGTGAGCCAGGGACTGAAGCTGAGATCCTGAAGTACTCAAGACGTGCCAAGCAACGGATGGCTGATCTTGGTGTGGAAAGCTTTTTTGGCAGTGGAATTGTTGGGGGGCGTGAACTGAATTGGTTTGCTGACCTTAGCTGGAATATGGGTTTAAGGGCGTCAAAGGAGAAGAAGTACAATTTTGGCTCTGAGTTTTTTGAGCTTGCAGCAGAGTTCTTCAGCTCACGTAATGCTGAATGTGATGAAAATCGGTCCAAGGTTTGCAAAGCATTGATCATGGCTGTCACTATCATGCTCAATGCTGAGGAGCTAAACAATTCTCCGCTGTCAGATTCTGACATTAAAAAAGGTGTTGAGATGCTAAGCAGAGCTGGAAAGCTATTGCCCTTGATTTCACCCTCCGTTCCAGTGGCTTCTGATCAGTTGGAGGCCAACAACTTCCTGTACCTTCACACCTTCAACTCCTACCAACTCATGGGCAGGATGGGGACCCCTGCACATCCTCAGCAGCTACAACTGATCAAGAATTTTGCTTCCTCTAAAGCATGCACACCTGCTAATCTTCTTACACTTGGTGTAACAGCTTCTAAAGGGGCACTACCTAACATGCTGGCTGCTGAATTTTCCCTGAAGGCCTGCATCACCACTGCCCTTGCTTCACAATCGCCAAACTACAGGGTAATCAGCTGTGCACTCAGGAAGCTAGCCTGTCTCGCTGGCTTACAAGACCTAAATGGTAGCAAGAGTGATGCAGCCTATGATGTATTTCAACAAGCCTACCAGATTGTGGTTGGACTGAAAGAGGGTGAATACCCAGTTGAGGAAGGCCAGTGGCTTGTAGCAACTGCCTGGAACATGTCATGTTTGCCTTTACGGCTTCACCAAGCTAAAGTGGCTAGAAAATGGATGAAAATGGGGTTAGATCTGGCTCGGCATCTTGAGGGCATGAAGGAGCGTATAGCATCCATGCAGACGACCTTTGAGAACTTGGAGAGGGTGTCTGGTGATGAACCTGATGAGTGTAGTCAGGAAGAGGCACCAAAAGCCAGTATTTCTGGTAGCATGTCTCAACCTGTTCTAGTTTAG</cdnaseq>

Protein Sequence

<aaseq>MKISELSPEYRQPPPHAGLIADLSKAVSDVESFAASATAPEKLAADLRRILTSLASAASSSSFTESLSVQIWRLGTRLWNAVVDRANSAALAGGPAALAVEAEIRQAAPELLLLAGIPNGVPSAAAKVASFFHRSGLAWLDLGRVDLASACFEKATPLVSAAATEDRGVLLELNLARARAASDAGDQALAVALLSRSKPLAAASPEGAKSLAQGYLSIGEATLAAKHSNPAVEASTLFTEALDLCEKAASPSSSSPRTPPYGGATPKTPNLEGLKRRCLRFLALERLQAQDYEGVLRCIRVSRASMGLEEEHPSIGVMAMRAWIGSGNMAEADKELERLMANALATENLCVSAAEAYLAAAGPEAARKVLIALAARCRAGGAAAAVRVVKQVIDGGGGGIGRARAIAELVSDERVVALFDGPGNTHERGTMHALLWNCGTEHFRAKNYDTSADLIERSMLYVSRDEESRSRRADCFRVLSICHIALQHLDRALEFVNEAYKVEPNIKCAFLKVKINLQKGEEDEAFKQMKTMVGCVDFNPEFLTLTAHEAMSCKSFGVAVASLSYLLGLYSAERPMPMPEVAVLRNLIELLSREPGTEAEILKYSRRAKQRMADLGVESFFGSGIVGGRELNWFADLSWNMGLRASKEKKYNFGSEFFELAAEFFSSRNAECDENRSKVCKALIMAVTIMLNAEELNNSPLSDSDIKKGVEMLSRAGKLLPLISPSVPVASDQLEANNFLYLHTFNSYQLMGRMGTPAHPQQLQLIKNFASSKACTPANLLTLGVTASKGALPNMLAAEFSLKACITTALASQSPNYRVISCALRKLACLAGLQDLNGSKSDAAYDVFQQAYQIVVGLKEGEYPVEEGQWLVATAWNMSCLPLRLHQAKVARKWMKMGLDLARHLEGMKERIASMQTTFENLERVSGDEPDECSQEEAPKASISGSMSQPVLV</aaseq>

Gene Sequence

<dnaseqindica>1..1313#1400..1589#1670..1702#1780..2397#2502..3209#ATGAAGATCTCCGAGCTCTCCCCCGAGTACCGGCAGCCGCCGCCGCACGCCGGCCTCATCGCCGACCTCAGCAAGGCCGTCTCCGACGTCGAGTCATTCGCCGCCTCCGCGACGGCCCCGGAGAAGCTCGCCGCCGATCTCCGCCGCATCCTCACCAGCCTCGCCTCCGCCGCGTCCTCCTCGTCCTTCACCGAGTCGCTCTCGGTCCAGATATGGCGGCTCGGGACCCGCCTCTGGAACGCGGTGGTCGATCGCGCCAACTCCGCCGCCCTCGCCGGGGGTCCCGCCGCGCTCGCCGTGGAGGCGGAGATCCGGCAGGCGGCGCCGGAGCTCCTGCTCCTCGCCGGGATCCCCAACGGTGTCCCCTCCGCGGCCGCGAAGGTCGCCTCCTTCTTCCACCGCTCCGGCCTGGCCTGGCTTGACCTCGGCCGCGTCGACCTCGCCTCCGCCTGCTTCGAGAAGGCCACGCCGCTGGTCTCCGCCGCCGCAACGGAGGATCGGGGCGTCCTGCTCGAGCTCAACCTCGCGCGTGCCCGCGCGGCGTCGGACGCGGGCGATCAAGCCCTCGCCGTCGCGCTCCTGAGCCGGTCCAAGCCCCTCGCCGCCGCATCGCCGGAGGGTGCCAAATCCCTCGCCCAGGGGTACCTCTCCATCGGCGAGGCCACGCTCGCCGCGAAGCACTCGAATCCCGCCGTCGAAGCGTCCACTCTCTTCACCGAAGCACTAGATCTCTGCGAGAAGGCGGCCTCTCCTTCCAGCTCCAGCCCAAGGACTCCCCCTTACGGCGGCGCCACTCCTAAAACCCCAAATCTAGAGGGGCTCAAGAGGCGATGCCTCCGCTTCCTCGCTCTCGAGCGGCTCCAAGCCCAGGACTACGAAGGCGTGCTGCGTTGCATCCGGGTCTCGAGGGCATCAATGGGGCTGGAGGAGGAGCACCCGAGCATCGGGGTCATGGCGATGCGCGCGTGGATCGGAAGCGGGAACATGGCGGAGGCCGACAAGGAGCTCGAGCGGCTGATGGCCAACGCCTTAGCAACGGAGAACTTGTGCGTGTCGGCGGCAGAGGCGTACCTCGCCGCTGCGGGGCCTGAGGCTGCACGCAAGGTGCTCATTGCGCTCGCCGCGCGTTGCCGCGCCGGAGGTGCTGCTGCTGCAGTGAGGGTGGTGAAGCAGGTGATCGACGGTGGTGGCGGGGGAATTGGGCGTGCAAGGGCCATCGCCGAGCTCGTGTCGGATGAGAGGGTGGTCGCCCTGTTCGATGGCCCCGGGAACACCCATGAGCGTGGCACAATGCATGCACTGCTGTGGAACTGGTTTGCACTCTCTTACCCAATTGATCTTCTGTTTGTTAATGCGCGCGCCTGCTGATGCTGAATCTGGAATTTGGAATTTGGGACAGTGGCACAGAGCATTTCCGCGCGAAGAATTATGATACCAGTGCGGACTTGATTGAGAGATCGATGCTTTATGTGTCTCGTGATGAAGAAAGCAGATCCCGCCGTGCAGATTGCTTCCGAGTCCTTAGCATTTGCCACATTGCCCTTCAGCATCTTGATCGAGCCCTCGAGTTCGTCAATGAAGCCTACAAGGTACTAAGTTTTCTCCTTATCCTTTGTCAGATGGTCCTGGGTGTTGCTTCATATATTTGACCAAAAATCTTTACCTGTAGGTTGAACCCAATATCAAGTGTGCTTTTCTGAAGGTAACAAGTCTATACATGTTAGCTTTGCAATGATCCCAATTTATTTGGTAAATTTACTAACCTGAGCGAATTTATAGGTTAAGATTAATCTGCAGAAGGGGGAGGAGGACGAGGCATTCAAGCAGATGAAGACGATGGTGGGCTGTGTTGACTTCAACCCTGAGTTCTTAACACTCACTGCTCATGAAGCTATGTCCTGCAAGTCTTTTGGTGTGGCAGTTGCTTCGTTGAGCTATCTTCTTGGCCTCTATTCTGCTGAGAGGCCAATGCCAATGCCTGAGGTTGCTGTTCTGCGCAACCTTATTGAGCTCCTCTCTCGTGAGCCAGGGACTGAAGCTGAGATCCTGAAGTACTCAAGACGTGCCAAGCAACGGATGGCTGATCTTGGTGTGGAAAGCTTTTTTGGCAGTGGAATTGTTGGGGGGCGTGAACTGAATTGGTTTGCTGACCTTAGCTGGAATATGGGTTTAAGGGCGTCAAAGGAGAAGAAGTACAATTTTGGCTCTGAGTTTTTTGAGCTTGCAGCAGAGTTCTTCAGCTCACGTAATGCTGAATGTGATGAAAATCGGTCCAAGGTTTGCAAAGCATTGATCATGGCTGTCACTATCATGCTCAATGCTGAGGAGCTAAACAATTCTCCGCTGTCAGATTCTGACATTAAAAAAGGTGTTGAGATGCTAAGCAGAGCTGGAAAGGTAAAGATGGAGCCTGGCAAATATCAAAAAGTTACCGTTGTCTTCTGTGTTTGAAAGTCATTGATTTTCTCTAAAATGATTTGCTTCGTTATTTTGATGTGCAGCTATTGCCCTTGATTTCACCCTCCGTTCCAGTGGCTTCTGATCAGTTGGAGGCCAACAACTTCCTGTACCTTCACACCTTCAACTCCTACCAACTCATGGGCAGGATGGGGACCCCTGCACATCCTCAGCAGCTACAACTGATCAAGAATTTTGCTTCCTCTAAAGCATGCACACCTGCTAATCTTCTTACACTTGGTGTAACAGCTTCTAAAGGGGCACTACCTAACATGCTGGCTGCTGAATTTTCCCTGAAGGCCTGCATCACCACTGCCCTTGCTTCACAATCGCCAAACTACAGGGTAATCAGCTGTGCACTCAGGAAGCTAGCCTGTCTCGCTGGCTTACAAGACCTAAATGGTAGCAAGAGTGATGCAGCCTATGATGTATTTCAACAAGCCTACCAGATTGTGGTTGGACTGAAAGAGGGTGAATACCCAGTTGAGGAAGGCCAGTGGCTTGTAGCAACTGCCTGGAACATGTCATGTTTGCCTTTACGGCTTCACCAAGCTAAAGTGGCTAGAAAATGGATGAAAATGGGGTTAGATCTGGCTCGGCATCTTGAGGGCATGAAGGAGCGTATAGCATCCATGCAGACGACCTTTGAGAACTTGGAGAGGGTGTCTGGTGATGAACCTGATGAGTGTAGTCAGGAAGAGGCACCAAAAGCCAGTATTTCTGGTAGCATGTCTCAACCTGTTCTAGTTTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004961