Os07g0138100

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Revision as of 08:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0138100| Description = Pleckstrin homology-type domain containing protein| Version = NM_001065392.1 GI:115470516 GeneID:4342362| Length = 5...")
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Gene Name

Os07g0138100

Description

Pleckstrin homology-type domain containing protein

Version

NM_001065392.1 GI:115470516 GeneID:4342362

Length

5259 bp

Definition

Oryza sativa Japonica Group Os07g0138100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:2039822..2045080

Sequence Coding Region

2039873..2039896,2040052..2040156,2040842..2040903,2040985..2041068,2041155..2041186
,2041289..2041370,2042839..2043067,2043787..2044014,2044177..2044469
,2044594..2044909

Expression

GEO Profiles:Os07g0138100

Genome Context

<gbrowseImage1> name=NC_008400:2039822..2045080 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:2039822..2045080 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgggtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgacgttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa</cdnaseq>

Protein Sequence

<aaseq>MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTL RKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCF YIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATV VAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQ LLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQI EFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVR AEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEER SELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHS SEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG</aaseq>

Gene Sequence

<dnaseqindica>52..75#231..335#1021..1082#1164..1247#1334..1365#1468..1549#3018..3246#3966..4193#4356..4648#4773..5088#acgcgcgcggggacagccttccgacctcctcccctctgatccggcgcggccatggcgtcgagcgggagcagcacggtgagtcctttcactgtctttctcgggatcacgctggataggacgcagagctctgcgagatttgtagggatgtgggtttcgtttcgagcggaatctcgctaaagctgggaatttgtctttttttttttttgttgttgcgtggtcgatgagtgcaggtggtgggagagatggagagcagcttggagcgggtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacagtaatttcttgtcttaatttttcttctccatattgcgtaattatccccttagcattttctcctgtttcttgatttctgccaactataacctgctattgttactgtggctgtggctaggatgatgaattaggaggatttatatgttgttcagtatactttaagcttctgtttgttttgcgttttaggagtttctgacattttgctatctgaacttttactttgtcgattctggttttaagtttagctatgaagtaaaatccataatacagtgggagtgacatattgtagaaaaaccataatagagtgggagcgacatattgtagaaaaggtagtaggtgcctgtgttacatttgtaggcagtgtccaagcacaaagtctcatgtatgtcagttggtttgtgaggttatcgggatgtttcctgcctctccctgttatctagatgcttgtttgcagatcagaatgcagggatgtaattggcaactttggatttgttttgtttttttgttttggtgtagatgtaaatatgatgtttcttaaaacaaatgccggttccccttttgacttcttgataaattttcgtgtgtttgtagtccattagtcatttatcttctgcttttgcattactgaatgtactatgccagtcttcctatttccccttgataaacttcacactttcaattgtcagctaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagtatgcaaaattacagctccttttgaatatttgaaccatagaattttttatcttgtggtcatagtttaacttctcatttaggattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgacgttgtcgccaatgaactttcagtacgatatgcttcattcctagtccattattatatttcagacttacgcgataagcactaaactgactcatgtttcctttggtgcagtggactgccgaaatatgatggatgctgtttctgtatccacacggactaactttttttaaccttacattcttttgcatgggtgatatttattttgggaccctctattttgttttattcaatgactaatgttctagatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacagtaagcttgtgatctatgattgtcgatgttattatttttaaaccatgtgcacagcattcttcctttattatattagtagtttgctactatggggtatcttacaaatgtttgaaaaaaatttagagtgaattccactttgggctaggtttagttatctatattgcaaattagaccaggcattagtaagccttttcacctagaactaggtattgttacaaattttgcaccttgtaccggtggcccacatgtcagtggatctttctccttcttcctcctcaaaactccctgagcccaactctatccacaccggtgagcttgtctcttcagccagtagcagcaaatagcggctggccagctagccctctcaggcccactccaactcctgttacacgaccggctgcagcatgcagaagtgccagggagcgcacaagacggagaacaacgagattgaataatcgaatcaatgtatgcacatggcctaagaatggttcaggagcacaacccactgcattgtcagctctcctccaattgtcttggacttaattatttccttcaaattgcaaatcgggagcgtcgcaaccctcggcggaggtcgagcgtggctgcagtgccggcagagtttgagcgtgcttagtcttctcatccagccttccctctctcacctcaagtttgtctagagcatctagaataaatggagatgaggcaggatagatcaggtgtgcgtcggcaggagtcacttgagaacagcggcagtggaagaactggcccaaagtgaaacattaatgtagacttccctggtccaaagtgaaaacttagtcctatccctagtccaagttgcaacttaggtaaaaaatagtggtccaatatgaaatttactcaaaaatttaatggtttaattgcttaactaccgtaatgatttattatgatatatttgaagcaaaatgatattttgtacattttttgtaagacttatacaataagatacattgttgcgagaaactgacatgttaatatcaatttaagctaacacgggtgcaacaccagcctgcagttttgggtattgaggtttggtgatctataagtacctcaaaacgttaaaactcggtacttttccaacaaatttcatattctgatgtttgcattagttcagttgccgcgtatgtatttgttaaaagattacaatgcttgagggcttgtgcttgggaggcacgttgactcgtggaggttagagcctgggaaaatcgagctgtttcattattccaaataagtgcttgtggtgctattcatagaggcagaggctttcttgttcactgtttgtatctatactgctatcagttgtccacccgacaactaagctaatgggctataagctggctaaaggctttcatttggtgctttgtgttattatttctctattgtttcagctgtgaatcgtgaaacctagtaaaatttcttgttttacctgcagtgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggtaagctcttcttcgtactacgtactaaggaatacctgaatcaaaacttagtagttgtgaaggaaatcactactgatgaatgtaggcttactgttagacccttaaaagtaaatatccttgctgtagtcaattaatattatattcaagtgttacactatgttcgcaaactaagttattggtacttaatttatcagaccagtgagtaatataaaaagaacatctgtatctattatgaagtatcgaaatttgcaactcaagtagtctgatagaacttcacaaactggcatcaacagcagctctgataaactgaatgtttactttggtacattcaaacctgttcgtccacttggcttatgtttgttcctgttcttttggttcttgatgaaaattttccaaacaccgttatgagctattaacaagatagaaagattcctattaatttatttaaaaaatgcttctcaagttatagtttgattgataaaaatatgcatttgcatttgcttctcggaagcagtctagtatttggttctcaggatctttgtctgaacaatgtccttgtatagtaattatttttaatactaatgactgcttgagaaaaaaagaactacctatacattttgaagatgccttctttggtattagttgtgtatcactaatgtgagacttctgtttttggatactgaagtttgttttttgtactgtatatctataatttacaggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttagggtaatagccattttagttaatctatatactatgcattttattatatataaatatattttatttgtgcatttacatggttatacacctgagtatcatgatcccacctcatgttaaatctgtgaatgtgcatttttaaaggtgaactgaattttgtattgacagttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaaggttctgcatgtatattctactatttaatttcctgttccttcaatcattgaaaagcatcataagattcttctaaaaaaacttgattggagagttaagaaggttttggaatatcttctctttgcagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaacctggcttgtttctattcttaaccccgttggcttgtattctatgttctcattttagttcattgcaaacattcatatattcaaattaaagctcgctatgagctcatggactttagttccacaacgtgttcactgtatccaagtggaataaaacagtgcaattgtgggtgtgt</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0138100, RefSeq:Os07g0138100