BGIOSGA006958

From RiceWiki
Revision as of 18:43, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA006958

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA006958, complete gene.

LocusTag

OsI_06220

Ensembl Transcript ID

BGIOSGA006958-TA

Ensembl Protein ID

BGIOSGA006958-PA

Length

5534

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:6134538..6140071

Sequence Coding Region

6139844..6140071,6139694..6139796),complement(6139384..6139598,6139000..6139237),complement(6138177..6138554
,6137734..6137819),complement(6134538..6135971

Genome Context

<gbrowseImage1> name=IndicaChromosome02:6134538..6140071 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:6134538..6140071 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGATTCACCCCAACCAGCCGCTGGCGCTGTCCGCGGCGAAGAACGCGAGCACCGTCGTCGTCGGCTCGCCGCTCCTCGCGGCGTCGCCGGCCTCCTCCCCAGCGGCGGCGTGCTGTAGCAGCCAGCTGCAGCAGCGGCGAGCCGCCGGGCCCGGGAGGAGGGGCGCCGGTAGGCTCGCGGCGCCGAGGTGCAGCACCATCGAGCAGGCCGCCGGCGTGTCGTCGGCCCCGCCCATCGGCGTTGTCTACGCCGCCCGCGGCATCGACGACCTCACCGACCTCATCGGCAAGACGCTCCTCCTCGAGCTCGTCAGCTCCGAGCTCGACCCAAGGACGGGGAAGGAGAAGGAGACGGTGAGCGCGTTCGTGCACAGGACGATGAAGCAGGACACGTACGAGGCGGAGTTCGCCGTGCCGGCGACGTTCGGGCCGGTGGGCGCCGTGCTGGTGGAGAACGAGCACCACCGTGAGATGTTCGTCAAGGAGATTCGCCTCGTCACCGGCGCCGACGACTCCTCCGCCGTCACCTTCGACTGCAACTCCTGGTCGTACCTGCCGGCGCAGACGCCCAAGGGGATCGAGGCGCTGAGGAAGAAGGAGCTGGAGACGCTGCGCGGCGACGGCACCGGCGAGCGCAAGTTCTTCGACCGCGTCTACGACTACGACGTCTACAACGACCTCGGCGACCCCGACTTCAAGATCAAGCACCTCCGCCCCGTCCTCGGCGGCGACGAACACCCCTACCCTCGCCGCTGCCGCACCGGCCGCCCCCACACCGAGATCGATCCGCGGACGGAGAAGAGGAGGGGGCCGGTGTACGTGCCTCGGGACGAGCAGTTCTCGGACGTGAAGGGGATGACGTTCAGCGCGACGACGCTGAGGTCGGGGCTGCACGCGATGCTGCCGGCGCTGGAGCCGCTGCTGGCGAACCAGGAGCTGAGGTTCCCGCACTTCCCGGCCATCGACGGCCTCTACAGCGTCGGCATCCCGCTGCCGGCACAGCTCGCCGCCGCCGGCGCCGCCACTGCCGCGGCCGGCGGCGCCGCGGCCTCCTCCTCCACCTCCACCAACATCGTCGGCGGCGTCATCCCCCGCCTCGTCCGCATGATCGAGGACACCACCGACCACGTCCTCCGCTTCGACGTCCCCGAGATGTTCGAGCGAGATAGGTTCTCGTGGTTCAGAGACGAGGAGTTCGCGAGGCAGGTGCTGGCTGGCGTCAACCCCATCTGCATCCAGCTCCTAACGGAGTTTCCCATCGTGAGCAAGCTGGACCCGGAGGTGTACGGGCCACCGGAGTCGGCGCTGACGAAGGAGTTGCTGGAGAGCCAGATCGTGGAGTCGGTGACGGTGGAGGAGGCGATGGCGCAGCGGCGGCTCTTCATCCTGGACTACCACGACGTGTTCCTCCCCTACGTGCACCGCGTCCGCGAGCGGCCGGAGACGACGCTCTACGGCTCCCGCACGGTGTTCTTCCTCACCGGCGCCGGCACGCTGTCGCCGCTCGCCATCGAGCTGGCGCGGCCGCAGTCGCCGACGAGGCCGCAGTGGAGGCGCGCCTTCGTCCACGGGCCCGACGCCACGGCGTCGTGGCTGTGGAAGCTCGCCAAGGCGCACGTCCTCTCCCACGACACCGGCTACCACCAGCTCGTCAGCCACTGGCTCCGCACCCACTGCTGCGTCGAGCCGTACATCATCGCCGCCAACCGGCAGCTCAGCCGGATGCACCCGGTGCACCGCCTCCTCCACCCACACTTCCGCTACACCATGGAGATCAATGCCCTGGCCAGGGAGAGCCTCATCAACGCCGACGGCATCATCGAGGAGTCCTTCTGGCCCGGGAGGTACGCCATGGAGCTCAGCTCCGTCGCCTACGCCGCCACGTGGCGCTTCGACGCCGAGGCCCTGCCCGAGGACCTGGTGCGCCGCGGGCTCGCCGTTCGACAGGAGGACGGCGAGCTCGAGCTCACCATCAAGGACTACCCGTACGCCAACGACGGGCTGCTGGTCTGGAACTCCATCAAGCAGTGGGCGTCGGATTACATCGACTTCTACTACAAGTCCGACGAGGAGGTCGCCTGCGACGAGGAGGTGCGGGCGTGGTGGGAGGAGGTGCGCACCAAGGGGCACGCCGACAAGAAGGACGAGCCGTGGTGGCCGGCGGTGGACACCCGGGACGGGCTCATCGGCGTCCTGACCACCATCATGTGGGTGACCTCCGGCCACCACGCCGCCGTCAACTTCGGGCAGTACCACTACGGCGGCTACTTCCCGAACCGGCCGACGGTGATGAGGAAGAACATGCCGGTGGAGGAGAACAAGGAGGAGGTGATGAAGAAGTTCATGGAGATGCCAGAGCACGTGCTGCTGGACACCATGCCGTCCAAGATGCAGGCCATCACGATCATGGCGACGCTGGACATCCTGTCGTCGCACTCCCCCGACGAGGAGTACATGGGGGAGCACGCCGAGCCGGCGTGGCTGGCGGAGCCGAGGGTCAAGGCGGCGTTCGAGAGGTTCGCAGGGAGGATGAAGGAGATCGAGGGCATCGTCGACGAGCGGAACAACGACCCGGAGCTCAGGAACAGGTGCGGCGCCGGCATCGTGCCGTACGAGCTGCTCAAGCCGTTCTCCACGCCCGGGGTCACCGGGAGGGGCATCCCAAACAGCATCTCCATCTGA</cdnaseq>

Protein Sequence

<aaseq>MIHPNQPLALSAAKNASTVVVGSPLLAASPASSPAAACCSSQLQQRRAAGPGRRGAGRLAAPRCSTIEQAAGVSSAPPIGVVYAARGIDDLTDLIGKTLLLELVSSELDPRTGKEKETVSAFVHRTMKQDTYEAEFAVPATFGPVGAVLVENEHHREMFVKEIRLVTGADDSSAVTFDCNSWSYLPAQTPKGIEALRKKELETLRGDGTGERKFFDRVYDYDVYNDLGDPDFKIKHLRPVLGGDEHPYPRRCRTGRPHTEIDPRTEKRRGPVYVPRDEQFSDVKGMTFSATTLRSGLHAMLPALEPLLANQELRFPHFPAIDGLYSVGIPLPAQLAAAGAATAAAGGAAASSSTSTNIVGGVIPRLVRMIEDTTDHVLRFDVPEMFERDRFSWFRDEEFARQVLAGVNPICIQLLTEFPIVSKLDPEVYGPPESALTKELLESQIVESVTVEEAMAQRRLFILDYHDVFLPYVHRVRERPETTLYGSRTVFFLTGAGTLSPLAIELARPQSPTRPQWRRAFVHGPDATASWLWKLAKAHVLSHDTGYHQLVSHWLRTHCCVEPYIIAANRQLSRMHPVHRLLHPHFRYTMEINALARESLINADGIIEESFWPGRYAMELSSVAYAATWRFDAEALPEDLVRRGLAVRQEDGELELTIKDYPYANDGLLVWNSIKQWASDYIDFYYKSDEEVACDEEVRAWWEEVRTKGHADKKDEPWWPAVDTRDGLIGVLTTIMWVTSGHHAAVNFGQYHYGGYFPNRPTVMRKNMPVEENKEEVMKKFMEMPEHVLLDTMPSKMQAITIMATLDILSSHSPDEEYMGEHAEPAWLAEPRVKAAFERFAGRMKEIEGIVDERNNDPELRNRCGAGIVPYELLKPFSTPGVTGRGIPNSISI</aaseq>

Gene Sequence

<dnaseqindica>1..228#276..378#474..688#835..1072#1518..1895#2253..2338#4101..5534#ATGATTCACCCCAACCAGCCGCTGGCGCTGTCCGCGGCGAAGAACGCGAGCACCGTCGTCGTCGGCTCGCCGCTCCTCGCGGCGTCGCCGGCCTCCTCCCCAGCGGCGGCGTGCTGTAGCAGCCAGCTGCAGCAGCGGCGAGCCGCCGGGCCCGGGAGGAGGGGCGCCGGTAGGCTCGCGGCGCCGAGGTGCAGCACCATCGAGCAGGCCGCCGGCGTGTCGTCGGCCGTGACGGTGGACAGGACGCTGACGGTGACGCCACGGTGACCGTGCAGCCGCCCATCGGCGTTGTCTACGCCGCCCGCGGCATCGACGACCTCACCGACCTCATCGGCAAGACGCTCCTCCTCGAGCTCGTCAGCTCCGAGCTCGACCCAAGTGAGCAGCACAACATATCCATGGCTTAGCCGAAGCTCCATGGATGCATGGACAAACACATGTAGTAGTAATTAACACCATGTCTATGCATGCAGGGACGGGGAAGGAGAAGGAGACGGTGAGCGCGTTCGTGCACAGGACGATGAAGCAGGACACGTACGAGGCGGAGTTCGCCGTGCCGGCGACGTTCGGGCCGGTGGGCGCCGTGCTGGTGGAGAACGAGCACCACCGTGAGATGTTCGTCAAGGAGATTCGCCTCGTCACCGGCGCCGACGACTCCTCCGCCGTCACCTTCGACTGCAACTCCTGGGTCCACTCCAAGTTCGACAACCCCGACGCCGCATCTTCTTCACCGTCAAGGTACTACAAACATCGATCGATCTCACCATCACACCATCCATGAACACTTGGAAGCATCATATCAACGACGTCTAGCGCGGCCATGGATCGATGCAGTCGTACCTGCCGGCGCAGACGCCCAAGGGGATCGAGGCGCTGAGGAAGAAGGAGCTGGAGACGCTGCGCGGCGACGGCACCGGCGAGCGCAAGTTCTTCGACCGCGTCTACGACTACGACGTCTACAACGACCTCGGCGACCCCGACTTCAAGATCAAGCACCTCCGCCCCGTCCTCGGCGGCGACGAACACCCCTACCCTCGCCGCTGCCGCACCGGCCGCCCCCACACCGAGATCGGTAACCCCACCTCACCTCCCAGAAATTTTACATCATTTTCACATCAAATTAATCGCCTATTCCCTCCGTTTCAGGTTATAAAACATTTTAACTTTTGTCAAAGTCAAACTATTTTAAGTTATTGACTAAGTTTATAGACAAATATAATAATATTTATAATATTAAATTAGTTTCATCAAATTAATAATTGAATATATTTTCATAATAAATTTGTCTTGGGTTAAAAATATTACTACTTTTCTTTATAAATTTAGTCAAAATTAAAACAGTTTGACTTTGACCAAAATCAAAACGCCTTATAACTTAAAACGAAGGGAGTAATAATGATCGAAGGCAAACCTAGGACAGCTTAGACCTGAGCCTATGTTTATCTCCATAATCATGCTCAAAAAAAATTTCTGGCTCAGCCACTGCTAATGGATTAAATGTATATGTAATTAATTAGATCCGCGGACGGAGAAGAGGAGGGGGCCGGTGTACGTGCCTCGGGACGAGCAGTTCTCGGACGTGAAGGGGATGACGTTCAGCGCGACGACGCTGAGGTCGGGGCTGCACGCGATGCTGCCGGCGCTGGAGCCGCTGCTGGCGAACCAGGAGCTGAGGTTCCCGCACTTCCCGGCCATCGACGGCCTCTACAGCGTCGGCATCCCGCTGCCGGCACAGCTCGCCGCCGCCGGCGCCGCCACTGCCGCGGCCGGCGGCGCCGCGGCCTCCTCCTCCACCTCCACCAACATCGTCGGCGGCGTCATCCCCCGCCTCGTCCGCATGATCGAGGACACCACCGACCACGTCCTCCGCTTCGACGTCCCCGAGATGTTCGAGCGTACGTGATAATTAATTAATTACGTGCCATGATTAGAGGCTAATCGGTAGTACTAATTAGTACTCCCTCCGTATGTATTTTAATGTATAACCGTCGCTGACTTTTTAACTAATATTTAAACATTCGTTTTATTCAAATTTTTTTATAAATATGAAAATATTTATGTCATGCTTAAAGAATATTTGATGATTAATTAAGTCATAATAAAATAAATAATAATTATATAATTTTTTTAATAAGACAACTGGTTAAATATTGAAAAAAACTTAACGGTGACCTATATTAAAATATAAATATCGAGGTAGTAACATGTTGATTAAGCAATGGATCAATTGGATTTGGCTTTGCATTGCGCAGGAGATAGGTTCTCGTGGTTCAGAGACGAGGAGTTCGCGAGGCAGGTGCTGGCTGGCGTCAACCCCATCTGCATCCAGCTCCTAACGGTAGCGCCGCCATTCCCAACCACATACACTATTCACCTGAGGACGACGTCACTTTCGATGACGTCATCCCCCAAAAAGAAAGAATTTTCGCTCGTCCCGTCCTGGTCATCCTTTAATGTGTAGTGGCGAACCCAGAATTTTTATACTAATAAATATTTCAAAAAATATACATATGTTGATGTCTTTAGGAGAGAAAAGATATATAGCAGTAGAAAAATAAACAAGGGGTACAGTGGCAGATGGAAAATTTTTTACAATGGGTATTAAAAATTATGTAGTATTTAAAAAACATGTTAGAGACTTTATATGACAAAAAAATGAAACAGTACAATATTTGGGTAAAAGCTGGGTGGTTGAGACTAGGAATCGAACCCAAGATCCATAATGGGTATATTAAAAATCACGTACTCCAGTATTTAAAAACATGTTAGTGTCTTTAGCAGAAAAAGGATTCAATAATAAAAAGAAAATATGCATCCTATATGTTAGCATCATACTCCCTTCCTCAATTTATGGCATGAAGTTATACCCATCTTAAACTCTCAAGTGAGTTTTTTGCTGATGTGGTTTTGAAATTTAAAAATATATATATAACTAACAAGTTGTAAATGATACAAACAATTCTTTTAATTAAAAATAATCATATATTAACCATACGGTAAAATTTTAATGTTTATATAATCATAAAAGTAGCCCATGAATTAAATGCACAGGTTTCCTAAAATTTATATGCAGAAACTTTTATAATACATACTATTTTATATTAAAAACAATTGAATTCGAATCTAAATTAAAATCTGGCATAAACTTTTGGTGTAAAAATTTTAGGGGTATAAACTTTAGTTATATAAACTTAACAAAAAATAAAAATCGCGTGACAAAAAAGAAAGTGTGGCCGTTCACAGTGTGCAAACATTAGCCCTTTTCGCTAGATAATTTCCCTCTCAATATTTAGCTAAAAGGTTTTAATGGCTTTAAATAAATGACACTATTGCTTTTTCTAATTTCTAGGACTATTTGTCATTTGTTAGCATCATATTCCCTTCTTCCTCAATTTATGGCATGAAGTTATACCCATCTTAAACTCTCAACTTAGTATTATGTTGATGTAGTTTAGAATTTAAAAATGTATATATAACTAACAAGCTGTAAATGATACAAAAATTATTTTAATTGAAAAATAGCCATATATTAACCATATGGTAAAAATTTAGTATTTATATAATCATAAAAATAGCCCATGCAATGCATAGGTTTTAAAATTTATATGTAGAAACTTTTAATACATACTCATTTTATATATTAAAAAAACATTTGAATTCGAATCCAAATTAAAATCGGACATAAACTTTTGTGGTAAAAATTTTAGGTGTATAAACTTTAGTTATATAATTAAACTTAGCAGAAAATAAAGTGTGGCCGCTCGCAGTGCGCAAACATTAGCCCTTTCGCTAGATAATTTCCCTCTCAATATTTAGCTAAAAAGTTTTAAATGGCTTTAAATAAATGGCGCCATTATTGGCTTTTCTAGTTTGTATGACTATTTTTCATTTGTAGAAATATTTGTGCAAATAGACAAACATACGAGTCGTAAAGTATTATTGATGACAAATCTAGTGGTATCCTTTTTTTTTATTTTGCTTAACATTGAACGAATGTCTGTTTTTAAAAGTTTGAGGAAAAAAGTCTCAAATGGTGTGAGTAGCAATTAAGGAAAACCGAACTCACCAATTAATTAATGGCGATCGATCGACGTGTGCAGGAGTTTCCCATCGTGAGCAAGCTGGACCCGGAGGTGTACGGGCCACCGGAGTCGGCGCTGACGAAGGAGTTGCTGGAGAGCCAGATCGTGGAGTCGGTGACGGTGGAGGAGGCGATGGCGCAGCGGCGGCTCTTCATCCTGGACTACCACGACGTGTTCCTCCCCTACGTGCACCGCGTCCGCGAGCGGCCGGAGACGACGCTCTACGGCTCCCGCACGGTGTTCTTCCTCACCGGCGCCGGCACGCTGTCGCCGCTCGCCATCGAGCTGGCGCGGCCGCAGTCGCCGACGAGGCCGCAGTGGAGGCGCGCCTTCGTCCACGGGCCCGACGCCACGGCGTCGTGGCTGTGGAAGCTCGCCAAGGCGCACGTCCTCTCCCACGACACCGGCTACCACCAGCTCGTCAGCCACTGGCTCCGCACCCACTGCTGCGTCGAGCCGTACATCATCGCCGCCAACCGGCAGCTCAGCCGGATGCACCCGGTGCACCGCCTCCTCCACCCACACTTCCGCTACACCATGGAGATCAATGCCCTGGCCAGGGAGAGCCTCATCAACGCCGACGGCATCATCGAGGAGTCCTTCTGGCCCGGGAGGTACGCCATGGAGCTCAGCTCCGTCGCCTACGCCGCCACGTGGCGCTTCGACGCCGAGGCCCTGCCCGAGGACCTGGTGCGCCGCGGGCTCGCCGTTCGACAGGAGGACGGCGAGCTCGAGCTCACCATCAAGGACTACCCGTACGCCAACGACGGGCTGCTGGTCTGGAACTCCATCAAGCAGTGGGCGTCGGATTACATCGACTTCTACTACAAGTCCGACGAGGAGGTCGCCTGCGACGAGGAGGTGCGGGCGTGGTGGGAGGAGGTGCGCACCAAGGGGCACGCCGACAAGAAGGACGAGCCGTGGTGGCCGGCGGTGGACACCCGGGACGGGCTCATCGGCGTCCTGACCACCATCATGTGGGTGACCTCCGGCCACCACGCCGCCGTCAACTTCGGGCAGTACCACTACGGCGGCTACTTCCCGAACCGGCCGACGGTGATGAGGAAGAACATGCCGGTGGAGGAGAACAAGGAGGAGGTGATGAAGAAGTTCATGGAGATGCCAGAGCACGTGCTGCTGGACACCATGCCGTCCAAGATGCAGGCCATCACGATCATGGCGACGCTGGACATCCTGTCGTCGCACTCCCCCGACGAGGAGTACATGGGGGAGCACGCCGAGCCGGCGTGGCTGGCGGAGCCGAGGGTCAAGGCGGCGTTCGAGAGGTTCGCAGGGAGGATGAAGGAGATCGAGGGCATCGTCGACGAGCGGAACAACGACCCGGAGCTCAGGAACAGGTGCGGCGCCGGCATCGTGCCGTACGAGCTGCTCAAGCCGTTCTCCACGCCCGGGGTCACCGGGAGGGGCATCCCAAACAGCATCTCCATCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA006958