BGIOSGA007171

From RiceWiki
Revision as of 18:44, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA007171

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA007171, complete gene.

LocusTag

OsJ_05287

Ensembl Transcript ID

BGIOSGA007171-TA

Ensembl Protein ID

BGIOSGA007171-PA

Length

7497

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:2054667..2062163

Sequence Coding Region

2061942..2062163,2060787..2060915),complement(2059744..2059802,2058880..2058937),complement(2057518..2057926
,2057255..2057382),complement(2057117..2057176,2056673..2056822),complement(2056157..2056312
,2055764..2055901),complement(2055600..2055673,2055275..2055376),complement(2054908..2055148
,2054667..2054741

Genome Context

<gbrowseImage1> name=IndicaChromosome02:2054667..2062163 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:2054667..2062163 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCGGGGGAGGGGTCGTCGACGGCGTCCGCAGATGGCTCCGCCGCCGCCGCGGCCGCACCGCCTCCGCCTATCAGCCCTTGCGCTCGTCTTCCCTGGCGCGCCACCCTGGCGGCGACGGTGGGCTCGAGGTGGTCCCGGGCCCCTTCGCGCTCCCCGCCGCCATCCGCGTCCCTGCGCGCAACTCGCCGCCGCCGCCCGACGCCCAGCTCAGGAACGAGGTGGCTTCTGGTGTTGGTATTTTGCAACAGGATGATCTTTTCTCCCGCTCTGCTTGTGCTTTCCAAGTGCTTGAATATATTCTTACCGTGCCATGGCAAAAGAATTATTCTGTAGAATTGTCAATTGTGGGGGTTAGGACCTGGGAACTTAGGAGCTTCATGAAAGATGAGATATTTGTTCATGATAGGTCTAATGACTCTAACATGGAGGCTAGAGATGATATGAACCAATGGAATTGTGCAATGAGAACATCGGACATGGAGTTCTTTACGGAATACGGGGAGGCAAGCCAATATCAGATTCAAGAGGTCGTTGGCAAGGGAAGCTATGGAGTAGTTGCTGCTGCAGTAGATACTCACACTGGGGAGAGAGTTGCAATCAAGAAGATCAATGATGTTTTTGAGCATGTTTCAGATGCCATCCGCATTCTGCGGGAAATCAAAGTTCTTCGGCTTCTCCGCCACCCAGACATTGTTGTGATCAAGCACATCATGCTCCCTCCTACCCGAAGGGAGTTCAGGGATATTTATGTTGTTTTTGAACTCATGGAGTCAGATCTACATCAAGTTATCGAAGCAAATCATGACCTTAGCCCAGAGCATCACCGTTTTTTCTTGTACCAACTTCTTTGTGCTCTCAAGTACATACATTCAGCTAATGTATTTCATCGTGACTTAAAGCCAAAGAACATACTGGCCAATTCAGACTGCAAACTGAAGATTTGTGATTTTGGACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACCGATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAATACACCCCTGCAATTGATATTTGGAGTATAGGGTGCATTTTTGCTGAAATTCTCACCGGAAGACCATTATTTCCTGGGAGGAATGTTGTGCACCAGTTAGATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGGATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACATCCTATCCCCTTTTCTCATAAGTTTCATAATGCTGATCCTCTCGCTTTGCGCCTGCTAGAGCGTTTACTTGCATTTGATCCTAAAGATCGACCTACTGCTGAAGAGGCTTTAGCTGATCCATATTTTAGAGGAATTTCTAAGTTGAGCCGGGAGCCTTCAAGACTGCCAGTTTCAAAATTTGAGTTTGAATTTGAGCGAAGGAAACTGACAAAGGATGATGTAAGAGAAATGATATATCGAGAGATATTAGAGTACCATCCCCAAATGCTTCAGGAGTACATCAGAGGTGGAGAACAAATTAGCTTCCTCTATCCAAGTGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAGCAGAGGAGAAAGAAGTACCCCCTTGCGGAGACAGCATGCGTCTTTGCCAAGGGAAAGAGTATGCTCATCAGTAGATAGCAATAATCAAGACTCTGACAATGAAGAGAGGAGAGCGATATCTTCTATTGCCCGAACTATGATAAGTCCCCCAAGATCACAAGAAAAGGGCAAGAATCGTGCATCTGCTTATCCAAATGGCATAATCAATCTAAACTCCAATCCTAAGATCTATTTAAAGAGTGCTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATAATGTGACCAGGATGCTCTCCTAG</cdnaseq>

Protein Sequence

<aaseq>MAGGGVVDGVRRWLRRRRGRTASAYQPLRSSSLARHPGGDGGLEVVPGPFALPAAIRVPARNSPPPPDAQLRNEVASGVGILQQDDLFSRSACAFQVLEYILTVPWQKNYSVELSIVGVRTWELRSFMKDEIFVHDRSNDSNMEARDDMNQWNCAMRTSDMEFFTEYGEASQYQIQEVVGKGSYGVVAAAVDTHTGERVAIKKINDVFEHVSDAIRILREIKVLRLLRHPDIVVIKHIMLPPTRREFRDIYVVFELMESDLHQVIEANHDLSPEHHRFFLYQLLCALKYIHSANVFHRDLKPKNILANSDCKLKICDFGLARVAFNDSPSTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEILTGRPLFPGRNVVHQLDLITDLLGTPSSETLSRIRNENARGYLTGMQRKHPIPFSHKFHNADPLALRLLERLLAFDPKDRPTAEEALADPYFRGISKLSREPSRLPVSKFEFEFERRKLTKDDVREMIYREILEYHPQMLQEYIRGGEQISFLYPSGVDRFKRQFAHLEENYSRGERSTPLRRQHASLPRERVCSSVDSNNQDSDNEERRAISSIARTMISPPRSQEKGKNRASAYPNGIINLNSNPKIYLKSASISASTCIIRGNKGPKENGISEDMEEVVYELSDNVTRMLS</aaseq>

Gene Sequence

<dnaseqindica>1..222#1249..1377#2362..2420#3227..3284#4238..4646#4782..4909#4988..5047#5342..5491#5852..6007#6263..6400#6491..6564#6788..6889#7016..7256#7423..7497#ATGGCCGGGGGAGGGGTCGTCGACGGCGTCCGCAGATGGCTCCGCCGCCGCCGCGGCCGCACCGCCTCCGCCTATCAGCCCTTGCGCTCGTCTTCCCTGGCGCGCCACCCTGGCGGCGACGGTGGGCTCGAGGTGGTCCCGGGCCCCTTCGCGCTCCCCGCCGCCATCCGCGTCCCTGCGCGCAACTCGCCGCCGCCGCCCGACGCCCAGCTCAGGAACGAGGTTCGTGTTCACACCTGCCCGCCTCGTGTCAGTTGTGTGGTGGTGAACTGGTGATGCTGTTAACCCTCGCGTGTTTCTCGGATTCCGGGTTGATCAATTGACAGGCTGTACGATGGGTGGAAGCTCACGTCTCTGCCATTTTCATGGATTCTTCTGGCCTTTTTTTTCACGAGAATTCGATGCGATTGAGTGGTTGAAGGGTGTGAACTCGATCGAATTTGACTTGTAGGGTGTGTGTTCAGTTGGTCGCGCCGGGAGTTTACTCGGTCTAAAGCTTCCCCGCTTTTGCTCTGAAATTTCGGTAAAAAAATGACGTGTGGCATTGCCTCCAAGTTCCAAGGCAATCTGACTGTTTGATTTAGTGCCAGCCATGTTTCTTCCGTTGGTCAAGTTCCACGGCAATCTGTCTGCTTGTTTTAGTTCCTACCATGTGTCCTCCCTTGGTCTAGGTGGTGGTGGTGGCACAGCAGAACAATTCCTTCAAATTCAGTGGTAGCAAGTAAGAACCTTAGCTTTTCTTTGATGCTATTAGCAATTGGAGCAACCCCTTCTAGCTCGAGCAATTTGTAGCATGATGTGGTAGTGGGCCTTGTAGGGAAAATATGCACTTTCCCATTCACAATGTGCAAAGCTTATTTCCGGTATGATTTTGATGGGTTCTTGGTTCGAAGAATAGTTGTCTTGTGTGTTTCTTCGCTAAAAGCCACACTGTTTTTCATTCTTGGATACAAGGATCGCGCAGCTCTATTCTTATCCAAAATTTCTCTTTGTTTATTTTATGAGCAATTTTACGGTCCTTGAAGAGATACCATGAGGTACCTTTTTTCTATTGTAAATTTGGTACCTCTTGGTACCTAGGTACTATAAGGTACCATGAGATACCAAATTTTACACTAAAATTTTAGTATCTCATGGTCCTCAAGGACCGTAGAATTGCTCTTATTTTTTATATAAAAACACTCGCCTTCAAGTGGATTTGGTTGATGCTTTATTCCAATTTTGCTTCCTGGTGGTTCTGTCTGTTAGGTGGCTTCTGGTGTTGGTATTTTGCAACAGGATGATCTTTTCTCCCGCTCTGCTTGTGCTTTCCAAGTGCTTGAATATATTCTTACCGTGCCATGGCAAAAGAATTATTCTGTAGAATTGTCAATTGTGGTGGGCTATGGCTATTCTGACCATGCAATTTCACAGGATAGGTTTTAGCTGTTGCTTGCTTCACGAAGGTGCACTTCTCCTATTTCTTGTTTGGAGCTCAAACCTTTGTGTCCCTTTTTATTATATTAATTCATTAGGTCAAATTTATCTCATGTGTTCTAAGTTCCTTCCGTACACGTTCCATTTAGTTTTTTGCTTGGATAGTTCGGCAGAAGCTCTGGTGTCCTTGTCTTTCTGATGTCGTTGGCAGTGACAGATTCTACTGATAGCAAATCTTGATTGCACCTTGGATCCAACTTCTTAATTTATTAAGTTTGACCTTGAGGGTATAGCATTTTTGTTTGGCTGAAATCTGACTTTATCACTCTGCCCATGATAATTATAAGGAGAAGAGCATAGATGCTGGCCTTTGCTATTTTTACTTGCTCTGCTGTTTATCTTTCTGTTGATACCATGAGCATTCAGAAGGTACCTCAGCCACTTTCCTGAAATGCTTGGGCAGTTGTATTACTTTTGATCGATGCAGTTCAAAACTCTAATCGTGTACTTCCTTTCTCTAATGATCCTTCATGTGGGGCTCATTTGTTATTGAGCAAGGTATATACTAGTTACTTCTCTTGTGTTATTGCCTTCACGCTATTTCGACTAGTTAATTTGTTCTTTTTAAGCAACTCTGATCTCCATTTCCTTACATATATGTAAATTGGTTACCTTATAAATCACTGCATCAAATGTGTTTTGATTTTTATGCTCACAACCTTCTAAGCTGTGGAGCTTAACATGCTCAAATCATCTCCCTTCCTGTGGATGAGGAATGCATCCTGTTTCAATTGTTCATATGCCACATCGAAGCTTTGTGGAAGGGGGTGGTGACTCTCTGCTGCAATCTGATTGGATGACTATTGCTTAGTTGGTAATCAGGGTGTAGTGTTCTCTGCTTTGGCAGCAACAAGAAACAGCATTTGCTGTTGTGTCTCCGTGTAGGGGGTTAGGACCTGGGAACTTAGGAGCTTCATGAAAGATGAGATATTTGTTCATGATAGGTGAGATATGGTTGCAGAGTTGGATGTAAATAAGGAAAGGACGATAGTTAGGAATAATGCACCTGCCAGTTTCTTTGCATCAAGAATGGATGTTTGCCCCTTAGTTCATAGTAGATATCTAAGATAAATGAAAAGGCAACACATGACTTTTCAGGGGGATGATGCAATAGTAGGTAGTGGCGTAGTGCTTGTCCACTTGAGTGCAAGTATCTGTCTATTATAACTTTGAATTCGCCAAAATAACCACGAGAATTTTGGACCATGAATGAAAATTGTGAAGAAAAGCATAATTTTTGGGCGGTACAGTGGGCTAGTGATAAATTGCATACTCATGCTAACTGTTTGGATTAGCAAAGTTCAAAATTCTAATATTAGTATCGAGGATATTGCATAAAATCCTTATATAGATGTATTAGAAAACCCAGATTGAGCAATTAATTTCAATTTAGCCTTGATGTTCTTTAAAGGTTTTGATGCACTCTTAATAATGATCTGCCAATTGTTTGATTTTCTTTTTTGCACGATAATTACATGGTGATAACTATGATATTGATTTTATGTTCATGTGGAACAGAGTTGATTGTTATAACATTACAAATTAAAATTACTTAATCTTCCACATTTTGTTGTAGCTAGAAATAGTGCATCCTGACCACTGTATGGATGTTGAATCAATGCATGCAGTCTCTTTGTAGACACATCTTCAAAGAAATCCAGTCTTGATTGGTACAAACTGAAACATTTTGCAAAACTATCCAATGTAAAATGTCGAAATATTTTAGAATTTTATTCAAATTCTTGTTTAGGTCTAATGACTCTAACATGGAGGCTAGAGATGATATGAACCAATGGAATTGTGCAATGGTTAGGCACTTAGGGTTCTTTGGATCAACGTGTGTTCGCCAAATCTTTTTTATGCTACATGTCTTCTTCTGATGAAAGATACATCCCTCTTACGTTACATTTACTCTTTTTCATTTATCTAAGCTGCAAGTTTAATTTAATTAGTTCTCCATCAATATGGTGCAAGGAGCTAGTAGCGTAGAAGGGTGCACAACATACTGGTGAGGGAAAAATTGATGTGGGCCCACATTATTTTTGGACAAATCCATCCCTTTTGCCTATCCCTCCCCTTTCCCCACTCTCCGAACTCCTAACCTAGTTTCTTCATTCTTCGATAATCTTCGAATCCCCCCTCTCCTACGACCGCAGCTACCTGTTATACCTAGAAATCCGACCCCTGTTTTTTCTTCCCAAATCAGATTTTGCTTCCTGCGGTGCCGGACAGCATTTTTGGCCTTGGAACACTGACGACCCACCTAATTCGAATCACCTTATTACATCTTCGATCGTTGGTCTGAACTCGTTCTCGTTCTCTTTCCACCTGATTCTAGTTGCCTTATTTTGTAATAGCTTGTGAACACAATTCATCTATATGTAGATCTTTTTTTGCTTTGACTTAACTGCATTGCTCTGATTTAACTATGTTTGTTACTGATCTTGACCATTGACATCGATCAATAACATTTTTCCTTTCCTGTTTTTATGTTTTGATTATGCATGTCATTTGCTTGAAGCTACTTTTGCCATATTGATGTGTGCCATTACAGTTTCCAAATTATCAGTTGTTCTGGTTCAGTTTATTTTATGTCAACTTCGATTAATTTGCAATGCTGCTTTGCTTTCTTTTTGGTCCTTTTGATTGTCTTATTTTACTGGATTGTTGAGGACTCCTAAAATGTTCCCTCACATGCTCTATACACATTTTTTCTATTCTGTGATGGTCTATATGATTTTGGGAAATTGTGATGTTTTAGAGAACATCGGACATGGAGTTCTTTACGGAATACGGGGAGGCAAGCCAATATCAGATTCAAGAGGTCGTTGGCAAGGGAAGCTATGGAGTAGTTGCTGCTGCAGTAGATACTCACACTGGGGAGAGAGTTGCAATCAAGAAGATCAATGATGTTTTTGAGCATGTTTCAGATGCCATCCGCATTCTGCGGGAAATCAAAGTTCTTCGGCTTCTCCGCCACCCAGACATTGTTGTGATCAAGCACATCATGCTCCCTCCTACCCGAAGGGAGTTCAGGGATATTTATGTTGTTTTTGAACTCATGGAGTCAGATCTACATCAAGTTATCGAAGCAAATCATGACCTTAGCCCAGAGCATCACCGTTTTTTCTTGTACCAACTTCTTTGTGCTCTCAAGTACATACATTCAGGTTAGTGATGAAATTAGCATCTAATTAACCTTGTCACCAACAGCCACTTCATTCCAAATCTGTATACTTTGTGGAAGTTATATTTCAACCATTAATCATTACTGAGTTTCTGATATATGGTTTAACTTGTCTCAGCTAATGTATTTCATCGTGACTTAAAGCCAAAGAACATACTGGCCAATTCAGACTGCAAACTGAAGATTTGTGATTTTGGACTTGCACGTGTAGCATTTAATGATTCACCTTCAACAATTTTTTGGACCGTACGACTTTATTTTCTCTATAACATAATTTCCCCTGTAAGATTTTCATAGACTTATACTGTGGTTTGCAATTTGAAGGATTATGTGGCAACAAGGTGGTACCGAGCTCCTGAATTATGTGGTTCTTTTTTCTCCAAAGTAAGCTGGTCATTCTGTAACACATTGTGCATTCCTGAAATGTGCAAGTCCTTCAGATTTGTATATAATTTTTTCTTAAAAAGTTGCAAATTCTCCAAATACAACTTCTTGTGTCAAGATACAAAGACGTATTTAGGCTTTTATCAGTACAGTATCACCCATTTCCCTTAATGAGAAGTGCTAAATTTACCTTCTTGCATTGGGCGCTGTCATATTTGTTTTTTACAAAACTGATGAGAAAGATATATTCCCATATTTTCATATTCATGAAGACAGTTGATTTTGTTTGTACAGTACACCCCTGCAATTGATATTTGGAGTATAGGGTGCATTTTTGCTGAAATTCTCACCGGAAGACCATTATTTCCTGGGAGGAATGTTGTGCACCAGTTAGATCTAATAACAGATCTACTTGGAACTCCATCATCTGAAACTTTATCACGGGTATGCCAGCTTATCACGCAATCACAAGAAGGAGAAATATTACTTATGAGTTTGCTATTTTCCATTGTTTCCCATGCGAGACATATTACCTTCTGTGCTATTGCTGGCAATGAAATGCAATTCCTGGTGCTCTACTACTTGTGACATAGAAGAACTTCACCAGCACAGACTTCCCTCTTTGTAGATATTATGCCACAGAATTCCTTGTTCATCAATATTTGATTGCAAAGTCTGAGACACAGTAAATTATTTCCTGTCTAGTAATGTAATTGTGATTTCTGCTATTCTAATCACATGTCTTGCAGAGACACATGAGTATTCATGCAATGATTTCTTTAATATTTAATATAACACCTGCAGATTCGTAATGAGAATGCCAGGGGATATTTAACTGGCATGCAGAGGAAACATCCTATCCCCTTTTCTCATAAGTTTCATAATGCTGATCCTCTCGCTTTGCGCCTGCTAGAGCGTTTACTTGCATTTGATCCTAAAGATCGACCTACTGCTGAAGAGGTATTTTCTTTTGGTGGAAAAGGTTTGGGTAAATTGGAACCATGCCATTATAATTTTGTAAAGTTTGAGATATGCCATCGGTATCTCAATAACATGTAAGACCCACATGAGTCAATGACGTGTGGGTCAGGATGGCATATCTCAAATTTTACAAAATTATAATGGCATGGTTCCAATTTTCCCTCTTATTTTATGTCCAATTAATTTCACAAGTGATTTCTGATGAGTAAGCATAACCTTTCCTACTTACTTTAGGCTTTAGCTGATCCATATTTTAGAGGAATTTCTAAGTTGAGCCGGGAGCCTTCAAGACTGCCAGTTTCAAAATTTGAGTTTGAATTTGAGCGAAGGAAACTGACAAAGGATGATGTAAGAGAAATGATATATCGAGAGGTACAAAGCTACCGCTCCATTTTATGTTATGGGCTGGCTGATAAATCCATCTCACTCAAAATTACTTTTTTATTTTCTGAAAGTAAACAGATATTAGAGTACCATCCCCAAATGCTTCAGGAGTACATCAGAGGTGGAGAACAAATTAGCTTCCTCTATCCAAGGTGAGCAAATTAGTTTTTAAATCTAGTTTGCTGGCGTGCTTTAAAAAAAGTATTGTTCATTCGGCCTAGCTGGTTTGCTTTATTTTCTACTCTCCGGGGAATATGATTGTTTTACGATAGTGAAAAAACATAATTTGTATATATTTTCATGCTGATAGTGCTGGCAGGTGATATAACCAACACCCTTATCCATGTCTCTTTTGCTAATACTAACTCCTTACAGTGGGGTTGATCGTTTCAAACGGCAGTTTGCTCATCTTGAGGAGAACTACAGCAGAGGAGAAAGAAGTACCCCCTTGCGGAGACAGCATGCGTCTTTGCCAAGGTATATAGCTGGAATTCACTAGCTCCTGAAACTTAAAATTGCCTAAAATCCTTTTTTTTATCTGAACAGAGAATCTTATGTGGTTCTTGTTCTGCTTGCTTCTTTACAAAAAAAATCATGTGACAGGGAAAGAGTATGCTCATCAGTAGATAGCAATAATCAAGACTCTGACAATGAAGAGAGGAGAGCGATATCTTCTATTGCCCGAACTATGATAAGTCCCCCAAGATCACAAGAAAAGGGCAAGAATCGTGCATCTGCTTATCCAAATGGCATAATCAATCTAAACTCCAATCCTAAGATCTATTTAAAGAGTGCTAGTATCAGTGCTTCAACGTGCATCATTAGAGGGAATAAAGGCCCGAAGGTATTTGCCTACTGCCAGTATGATGACAGTGCTTAAATTTTAGCCTGACACTTGGTAAATCTTATGAGTAAATTATCAGTGCATTTTTTCCCTCGTATCTTTGTTTTTGTGGGTCTGACTAAGTTTTACTCTGTTTCACTTTGCCTTTTTTTTTTTCACTCTGAAGGAGAATGGTATCTCTGAGGACATGGAAGAGGTTGTCTATGAGTTGTCAGATAATGTGACCAGGATGCTCTCCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA007171