Os07g0160000

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Revision as of 08:23, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0160000| Description = Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein| Version = NM_001065471.2 GI:297606765 GeneID:4...")
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Gene Name

Os07g0160000

Description

Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein

Version

NM_001065471.2 GI:297606765 GeneID:4342448

Length

7438 bp

Definition

Oryza sativa Japonica Group Os07g0160000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:3239274..3246711

Sequence Coding Region

3239274..3239386,3239472..3239702,3242516..3242642,3242729..3242788,3242868..3242960
,3243073..3243369,3243450..3243761,3243857..3244114,3244227..3244375
,3244470..3245102,3245367..3245640,3245736..3245822,3246497..3246586
,3246700..3246711

Expression

GEO Profiles:Os07g0160000

Genome Context

<gbrowseImage1> name=NC_008400:3239274..3246711 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:3239274..3246711 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccaccgccgccaccgcccaggcctccgcctcctcctccaccgcctccacccgcggctcccccgccgcctcctcctcctcccactccgccgtctgcctcgtccccttcaggtggtgggcgagggtgagggaggaggcgccgccggaaggcggggtgaggtacgcggcgaccgcggcggcgtcgccctcgtcgtactacgggcttcgcttgctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcggcacgggtgccggcgccggggggcggagctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgcgaggcaaaattctagtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttggtgcttaggatatctgttcgagaaacaagcattttgactgtgaagatcagcaaaaaggacaatccagttgagaactataaacgggcatacaagatttttaatattgattctcaaccagttcatgtttgggatttttcaggccagacaaacctaatattaatgaatgagtggaataggtcaaatcatgactgctgccactcagagctagagaatattcttgaagtgcaagtctatgcaatgtctgactccttaacttccaagattggtggaaccagcaaagagtatacagaacaatcttctgcagatgttaatgatatggatgttgatttgtcctatggaagctttggaagatctagctcgcatgggctaattggattggaaaatcttgggaatacttgctttatgaacagttcaattcaatgtttggcccacacatcaaagcttgttgattatttcctaggagattatgacagggatataaatcggactaacccactaggactgaatggggaacttgctttggcatttggagaattattgaggagattatggaacaccgagagaaaaccagtttcaccacatcactttaaggcaaagattgcttgttttgcccctcagttcagtggcttcaatcagcatgattcacaggagcttcttgctttcttattggatggcctccatgaagatcttaaccaggtcaagtgcaagccatatgaagaagctaaggatgcaagtgggcgccctgacaaagaagtggctgatgagtactggagtaatcatttagctcgaaatgactctgtaatagttgatacttaccatgggcagtacaaatctacattaacttgccctacttgcagtaaaacatctgtcacttttgacccatttatgtacttgtctttgcctgtaccttccacggcaaagaggacaatgactgttacagttttcagcactgatggtagtatagagccaatctcatatgatgtcactgtgccacaatttgggagtcttaatgatcttgttcaggctttaagttctgcttgttcactgggagatgatgaaatcctgctgattacagaggtttataacaaccgcatcctccgatacctcgaagagccttcagattcagtttcattgctgagggatggagataaattggcagcattccggctaccaagaaaatatgaaaaatccccagttgtggtttttacacaccaatattttgatgagcgttctagtattgataatataacaccacaaatgaaggaatttgaggccccactgctggcagttcttcctgagagagccaatggattaactctgaagaatatctacctgaagttgttggaaccattaagattttccaagagtactagttctcttaatgatagtgggaggtgtaatagtggctgtgctgctgtcatgatggatgcaacgcctgattcagatagtaagtttcagagtgctccatcggaaaacgcccctgaaagtagccagtctgagactattgaatgccaaatgaccgaaggacctagtgagtcaaatattggtgacactactgattctgatcgggaggcacacatggaagagtttgaattttatttaataaatggaaggggtgaattccagcagacgagaatacaaacagatgaggtggatttacagacaacaccaaaccggctacttatcaatgtccattggcaacaaaatgcagtaggacaatatgacacctcaatgctgaaaagtctacctgagattcataagcttgagcttatcccgaaaggaaatgaagattctgtcgcactacatggttgtctggaagcctttctaaaagaggaaccgttgggcccagaagacatgtggtactgcccatgctgcaaaaagcatcaacaagcgatgaagaaattagatctgtggaggctaccggaagttcttgtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagacatttgtggatttccccattagtgatttggatctgtcatcatatatcattgacaagagtgaactatcagactgccactatcgcttgtatgctattagcaatcactatggaaatatgggaggtggacactacaccgccagcatctaccatgaagaagggaagggatggtataagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgaccagaccaggttggatgggcatcagagctttatgtgcaacaaggtgtcctggacaaactgtgttctgaatgacaactccataccccaggttgtcatctga</cdnaseq>

Protein Sequence

<aaseq>MATAATAQASASSSTASTRGSPAASSSSHSAVCLVPFRWWARVR EEAPPEGGVRYAATAAASPSSYYGLRLLHSFLHPDLVLRLERGGCRGTGAGAGGRSYA LVPADELSRVLARQNSSLALHNKHSFAEDSAGAYPLVLRISVRETSILTVKISKKDNP VENYKRAYKIFNIDSQPVHVWDFSGQTNLILMNEWNRSNHDCCHSELENILEVQVYAM SDSLTSKIGGTSKEYTEQSSADVNDMDVDLSYGSFGRSSSHGLIGLENLGNTCFMNSS IQCLAHTSKLVDYFLGDYDRDINRTNPLGLNGELALAFGELLRRLWNTERKPVSPHHF KAKIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNQVKCKPYEEAKDASGRPDKEVAD EYWSNHLARNDSVIVDTYHGQYKSTLTCPTCSKTSVTFDPFMYLSLPVPSTAKRTMTV TVFSTDGSIEPISYDVTVPQFGSLNDLVQALSSACSLGDDEILLITEVYNNRILRYLE EPSDSVSLLRDGDKLAAFRLPRKYEKSPVVVFTHQYFDERSSIDNITPQMKEFEAPLL AVLPERANGLTLKNIYLKLLEPLRFSKSTSSLNDSGRCNSGCAAVMMDATPDSDSKFQ SAPSENAPESSQSETIECQMTEGPSESNIGDTTDSDREAHMEEFEFYLINGRGEFQQT RIQTDEVDLQTTPNRLLINVHWQQNAVGQYDTSMLKSLPEIHKLELIPKGNEDSVALH GCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNK LETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNMGGGHYTASIYHEEGKGW YKFDDECVRPITEDSIKTPAAYDQTRLDGHQSFMCNKVSWTNCVLNDNSIPQVVI</aaseq>

Gene Sequence

<dnaseqindica>1..113#199..429#3243..3369#3456..3515#3595..3687#3800..4096#4177..4488#4584..4841#4954..5102#5197..5829#6094..6367#6463..6549#7224..7313#7427..7438#atggccaccgccgccaccgcccaggcctccgcctcctcctccaccgcctccacccgcggctcccccgccgcctcctcctcctcccactccgccgtctgcctcgtccccttcaggtatatgttactcatcatcttcgctgtgttttggttgtggtttggttttggttttggttttgatggggcaatgtgggtttcgcaggtggtgggcgagggtgagggaggaggcgccgccggaaggcggggtgaggtacgcggcgaccgcggcggcgtcgccctcgtcgtactacgggcttcgcttgctccacagcttcctccacccggatctcgtgcttcgcctcgagcgcgggggttgccgcggcacgggtgccggcgccggggggcggagctacgcgctcgtgccggccgacgagctctcgcgtgtgctcgcgaggtgagagactcgctaatggcacttccgttttccatttttttgggctactcggaggggggggggatattggtggatgctagtgagcgcaaaatcgaatttagttcaatcatgtggctaagggggatgatctccattacttccgttttttcatttttggctactcggtgaggggtattgatggatgctagtgagcgcaatagaatttagttcaatcatgtggctaagtggaatgatctggtacatgcattcctgattcctatgggtacatacatgacctttgacctggttgattcagcattgagatctaattagtttctaatgtattgtgagttccatgattttttgaacttcaataagcttgaattctagttaggggaagtgtatttagcaatccctgaaactcgggaatgctccatggcttggtatgtgacctcgaaaggatgaattcagcatttcaagctagattagtgcctcgtttgtaacgtgagggtggcaatcatctatccatactagagccacaacgtgatgctgagggcagggcttgtaggttgtaccagaccatttgctaggtggtgaacttgtttcttgcattgcttgatggttaaatatgttgtcccctttcagtctagacacatatgttttagcccattttagctctatgcctttgctatagattctttcctccaacttttgaacctctaacatagcaatactggcaatttggcatggacagttgcaaacgcaacggacttttaaaactgtagcgtttcatgcagcttcacttctgatttgtgggaagccaggataaattactcttaaagaaatttctctataagctgaagttctcaacataatataattgcatgtaaaataaataaaactgtaagtcatgatatagttacatacttacatttcatgcagggctatgctaacattgttcgcatctccatgttgcgcaaacttggagggtgcagttaggattttttttttgtttggctttcttaggaagcaaatcaaacctgtctcaaaatgattgcttttaataatgcataaattttgcattcattatctagtgagagtttagtgtctcaacagcaatgctgatgggttcatcttcctttctgcacttaagtttgtgctgtgttttcttacttgaattattgctttccaaagtaaggtttctgcaatatgcttgtcaataaaatcatgcatgcatatgatgtgtgttgctctgttctgcatctttttgcaaataggatttactgagtgagcacataccaagtgttgaggctcaactgtttagtccagtagaccccattggttgataggtgcaattttttataaatacatttttgtttcttgacaaaagacgataataaatacacatgtgcacatttttgactttcgtggaaaatatagggccttctggtctgtaggatttattcaattattgagagggaaagcaattcaatatgggttccctttaatcctaggctggccctgcttttatgacaggggcttttgttgggtttgattttatagattattttggtatcacagaagcatccatgaatatcatctcatgttttgcattttggtaacctagactttcattttagaaaacaatgtgcaacctagccactatttatctctcttctcactatgttgagtagcaagttttggtcaaacagtaagcataatcatcaattctaattgtgattgaaattattcgtctatgttcagttagtaatacccctatatgtgagacatgagtaggattatattctgaacctccatattcttgcacctttaatccagcttcttaggctatagctctccctgaaacgagtttcttgggaccctaattttaatcttcaggagttctatttggttttaaatattccttacaagtaacgaagaagaagacttggtaacgaaggtaaacttgttttgctgaagttaggctagaaaatgtttcatatagaataatataaactttctattgttacatgcgattcctatttcctctcaagtctggacttatatttcaataacaaagaatctgcagtctagaggattgatgattaattgaataggataactagaaagaagctgctgttctatatattatcgttttctctgtcgctggcaagtacctaaatgtattctcagtagatcccaatgttagctaaatatgacattattttcttggtatattttaataccattcaagctccactttgtcactatgtttaccattatgcctgtctttgttatactattgtgcattttgagcacttttggacaatatacttttggaccatgtggtgatatctgtgtgctgatagcatcctctccttgcttagcacatttcatcaatgtgctcagttcttgccttccaccaatcacagcagattacatcttccttttcagctcagctctcagctgttcactgcagcgtgcacttagctttccggcctcaccatatttcctgtgcatgtgcacgtgctgcttgcagcatgaggtgtggtcagcactcacacttacatgagtagctctttccttgtctgggtcagctaagccaagtgagagagagcagaggattaattttcagttctaggaatatatatattctgcagtgctgtaatgtcgtccaattgttttgtaccttgatgccaaagatgtttcttcagaatatcaattttcatgaaatcttgtctgtgttatttttttatttgcctaataggttcaatttacagcttccatcttgccgcatctatttctgctgactttatttctgttttcttctccaggcaaaattctagtttggcattgcataataaacattcatttgctgaggatagtgctggtgcgtaccctttggtgcttaggatatctgttcgagaaacaagcattttgactgtgaagatcagcaaaaaggtaatgctatcctatttgacagatgatatatggctctatcaaatttttttctcatgcccatccttacaatttctattctatttcaggacaatccagttgagaactataaacgggcatacaagatttttaatattgattctcaaccagtatgtcgctgtttgtctgcatttcaagttcagcaatatactcccacttgttcagtttacttaatgtttctttatccaggttcatgtttgggatttttcaggccagacaaacctaatattaatgaatgagtggaataggtcaaatcatgactgctgccactcagagctagaggtattatcagttgatactcccctgcttgatacccttgtttttctgtttcagaatcaggcataaaatttccttcctagatccatattcttatcattttttttggcatgtgcagaatattcttgaagtgcaagtctatgcaatgtctgactccttaacttccaagattggtggaaccagcaaagagtatacagaacaatcttctgcagatgttaatgatatggatgttgatttgtcctatggaagctttggaagatctagctcgcatgggctaattggattggaaaatcttgggaatacttgctttatgaacagttcaattcaatgtttggcccacacatcaaagcttgttgattatttcctaggagattatgacagggatataaatcggactaacccactaggactgaatgtatgtatagtttgtcatgagtttactgtttgtttcctttgaatatatcggctaaattcactgatgttttcattacttagggggaacttgctttggcatttggagaattattgaggagattatggaacaccgagagaaaaccagtttcaccacatcactttaaggcaaagattgcttgttttgcccctcagttcagtggcttcaatcagcatgattcacaggagcttcttgctttcttattggatggcctccatgaagatcttaaccaggtcaagtgcaagccatatgaagaagctaaggatgcaagtgggcgccctgacaaagaagtggctgatgagtactggagtaatcatttagctcgaaatgactctgtaatagttgatacttaccatgtaagttctttaaatttttcatgtgttaaagcaattacactattattttctcctgcttctcctgccattgacccttttctgacatctacttgcaggggcagtacaaatctacattaacttgccctacttgcagtaaaacatctgtcacttttgacccatttatgtacttgtctttgcctgtaccttccacggcaaagaggacaatgactgttacagttttcagcactgatggtagtatagagccaatctcatatgatgtcactgtgccacaatttgggagtcttaatgatcttgttcaggctttaagttctgcttgttcactgggagatgatgaaatcctgctgattacagaggtatgcttttatctccattgagctttggcccttttgcgtttttgccactttctatctcaggttaaacagtatgagtcatattaggccttttacttactggaagtgactacaggtttataacaaccgcatcctccgatacctcgaagagccttcagattcagtttcattgctgagggatggagataaattggcagcattccggctaccaagaaaatatgaaaaatccccagttgtggtttttacacaccaatattttgatgagtaagcacaatcagatatatttgttgctagatttttatttgacttaggtattttagtagaactaataatacgcttttggtacctctgaatccaggcgttctagtattgataatataacaccacaaatgaaggaatttgaggccccactgctggcagttcttcctgagagagccaatggattaactctgaagaatatctacctgaagttgttggaaccattaagattttccaagagtactagttctcttaatgatagtgggaggtgtaatagtggctgtgctgctgtcatgatggatgcaacgcctgattcagatagtaagtttcagagtgctccatcggaaaacgcccctgaaagtagccagtctgagactattgaatgccaaatgaccgaaggacctagtgagtcaaatattggtgacactactgattctgatcgggaggcacacatggaagagtttgaattttatttaataaatggaaggggtgaattccagcagacgagaatacaaacagatgaggtggatttacagacaacaccaaaccggctacttatcaatgtccattggcaacaaaatgcagtaggacaatatgacacctcaatgctgaaaagtctacctgagattcataagcttgagcttatcccgaaaggaaatgaagattctgtcgcactacatggttgtctggaagcctttctaaaagaggaaccgttgggcccagaagacatgtggtgagtcatgagtgccccccctgaggaacaactgttatgcttttggcttcactgcttattgaatagccttctttgcaatcttcatttcttttgttaaccaaaataggttgatgtgcgtatgtatgaagctgaaatagattgattacctttgcaaaatattacctcaatacatggctagcttgctttggattctgaattggaagtgtactgttgtactgttgttgcattactgatacccactttttttctctgctttgcattcaggtactgcccatgctgcaaaaagcatcaacaagcgatgaagaaattagatctgtggaggctaccggaagttcttgtcattcatctcaaaaggttctcgtacacccaattcacaagaaataagcttgagacatttgtggatttccccattagtgatttggatctgtcatcatatatcattgacaagagtgaactatcagactgccactatcgcttgtatgctattagcaatcactatggaaatatgggaggtggacactacaccgccagcatctacgtgagtttcctctttcatgtattctcattacacccagcctttaaaccatctttttcaatgtcttgataacgagcaaggctggttggtttctgcagcatgaagaagggaagggatggtataagtttgatgatgagtgcgtgagacctataactgaagacagtataaagacacctgctgcttatgtgctgttctacagacgagaatgatcaagatacagctgcaatacatcaaatattttttcgggatgttttgccaagtctagatcttcctacatattcaacatatggggcacttgaatctctcaagtcactaacctatacaatagcatgtacagattcaattgccgacaggagaacaaaagacctagctaatgaactattcttttccagattctttttgtacatggcttgggggtcctacaatgtaattgcctgctagtgattagcctgggttctacaaaattctttttgtcaccgaattgttgccaataatttttaaaacgatgtaacctctcctttttaattaactcgtgtgatcgatctgttcctgtcgcgagtgcgacgccatagctactcctgtgttgctccatccatgaatggctatttgccaattcctgagagtcagatggcactgacatgatgatcattgaaggtctgaaaaccccattctgtagctttgctttatggaccaggaaaatatatacatgatcatctctgattccgacctatctccagaactctgctgtttgacaaataacagaagattattgctgtcctcagtgctgtttggcctgattgccttggacaaatattctgacatatctcaacaacatcttttctgccttgacataccacaggaccagaccaggttggatgggcatcagagctttatgtgcaacaaggtgtcctggacaaactgtgttctgaatgacaactccataccccaggtacagtgaacagctgatcttcatgtgcaagctaatatgctaattccctccttttacccatgttttttctctctctgaaactttgtgcgttcgtttgtgcttgtgttgtcaaggttgtcatctga</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0160000, RefSeq:Os07g0160000