Os07g0188800

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Revision as of 08:25, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0188800| Description = Similar to Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)| Version = NM_001065617.1 GI:115470966 GeneID:4342...")
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Gene Name

Os07g0188800

Description

Similar to Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)

Version

NM_001065617.1 GI:115470966 GeneID:4342610

Length

6829 bp

Definition

Oryza sativa Japonica Group Os07g0188800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:4766778..4773606

Sequence Coding Region

4766885..4766912,4766998..4767083,4767175..4767249,4767339..4767500,4767624..4767702
,4767922..4768076,4768225..4768288,4768928..4769007,4769366..4769431
,4769932..4769982,4770087..4770238,4770323..4770413,4771156..4771236
,4771330..4771407,4772315..4772350,4772425..4772468,4772567..4772645
,4773035..4773125,4773268..4773374

Expression

GEO Profiles:Os07g0188800

Genome Context

<gbrowseImage1> name=NC_008400:4766778..4773606 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:4766778..4773606 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctccgcgccgccctcctccgctcaggctccggcctccgccggcctcccatggccgcgccgctctccaccgccgccgccgcctcgtggctctccgacagcgcctcgtctccgcctagggtgcgcctcctcatcggcggggagttcgtcgagtcgcgggccgacgagcacgtcgacgtcaccaatccggcgacgcaggaggtggtgtcgcggatcccgctcaccaccgccgacgagttcagggccgccgtggacgccgccaggaccgccttccccgggtggcggaacacgccggtgaccacgcggcagcgcatcatgctcaagtaccaggagctcatccgggccaacatggataaactggcagagaacattacaaccgaacaggggaagacactgaaggatgcttggggcgatgtattccgtgggctagaggtggtggaacatgcttgtggaatggggacactgcagatgggtgaatatgtatcaaatgtttctaacgggattgacacctttagcattagggagccacttggtgtatgtgctggaatatgtccattcaattttccagctatgatccccctatggatgttcccaatagcggtcacttgtggcaatacttttgttctaaagccatcagaaaaagatccaggggctgctatgatgcttgcggagctagcaatggaggctggtttaccaaagggtgtgttgaacattgttcatggtacccatgatgttgtgaacaacatttgtgatgacgaggacatcaaggcagtttcctttgttggttccaatatagctggtatgcatatatattctagagcatcggcaaaggggaagcgtgttcagtctaatatgggtgcaaagaatcatgcaattatccttcctgatgctgaccgagatgccacactgaatgcccttattgctgctggttttggtgctgctgggcaaaggtgtatggcattgagcactgctgtttttgttggaggttcagagccatgggaggatgagctagtcaaacgtgcaagcagccttgtggttaattcaggaatggctagtgatgcagaccttggtccagtgatcagcaaacaggctaaggaacgtatctgcaaattaatacaaagtggtgctgataatggtgctcgtgtgctgcttgatggaagagatattgtggttcctaacttcgagaatggtaattttgttggtccaacactccttgctgatgttaaaagtgaaatggaatgttacaaggaggagatttttggtccagttcttctcttgatgaaggctgagagcctagatgatgctatccaaattgtgaacagaaacaaatatggcaatggagcatccatatttacaacatctggtgtgtctgcaaggaaatttcaaacagacattgaagctggccaggtgggcatcaacgtgccgattccagtacccctgccgttcttctccttcaccggcagcaaagcctcctttgcaggagacttgaatttctacggcaaggcgggcgtgcagttcttcacccagatcaagacggtcacgcagcagtggaaggagtcgccggctcagcgcgtctccctctccatgcccacctcgcagaagtga</cdnaseq>

Protein Sequence

<aaseq>MLRAALLRSGSGLRRPPMAAPLSTAAAASWLSDSASSPPRVRLL IGGEFVESRADEHVDVTNPATQEVVSRIPLTTADEFRAAVDAARTAFPGWRNTPVTTR QRIMLKYQELIRANMDKLAENITTEQGKTLKDAWGDVFRGLEVVEHACGMGTLQMGEY VSNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGA AMMLAELAMEAGLPKGVLNIVHGTHDVVNNICDDEDIKAVSFVGSNIAGMHIYSRASA KGKRVQSNMGAKNHAIILPDADRDATLNALIAAGFGAAGQRCMALSTAVFVGGSEPWE DELVKRASSLVVNSGMASDADLGPVISKQAKERICKLIQSGADNGARVLLDGRDIVVP NFENGNFVGPTLLADVKSEMECYKEEIFGPVLLLMKAESLDDAIQIVNRNKYGNGASI FTTSGVSARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVQFFT QIKTVTQQWKESPAQRVSLSMPTSQK</aaseq>

Gene Sequence

<dnaseqindica>108..135#221..306#398..472#562..723#847..925#1145..1299#1448..1511#2151..2230#2589..2654#3155..3205#3310..3461#3546..3636#4379..4459#4553..4630#5538..5573#5648..5691#5790..5868#6258..6348#6491..6597#acgcctccccttcccccccattctactccaccactccactccccaatccaaccaccccccgaacaaccggagaagagaggctgcactccactcgccgccggcgaccgatgctccgcgccgccctcctccgctcaggtaggtcgccgccgcctcctcctcctcctcctcccttctccgcggcgactcctctgacccttctcggccccgcctccccacgcaggctccggcctccgccggcctcccatggccgcgccgctctccaccgccgccgccgcctcgtggctctccgacagcgcctcgtctccggtaagcacccgcgcgcggctcatccattcccaatttcccatccgtgtgaagtgtgattgacctctctctctctctcactctcccggcgcagcctagggtgcgcctcctcatcggcggggagttcgtcgagtcgcgggccgacgagcacgtcgacgtcaccaatccggtaaagcccgccgtgagcctccccacgatcgatcgatttgggaggtgtggtgtgggggcatgtgacagtgattctctgggtgtgcgcaggcgacgcaggaggtggtgtcgcggatcccgctcaccaccgccgacgagttcagggccgccgtggacgccgccaggaccgccttccccgggtggcggaacacgccggtgaccacgcggcagcgcatcatgctcaagtaccaggagctcatccgggccaacatggtaattagttgatagatggattgaccttccttccatcgttgggggattggagagctagaagcttcactcgatgatgtggttggatcatgttatagtgattctgttctttttttgtgatgtcaggataaactggcagagaacattacaaccgaacaggggaagacactgaaggatgcttggggcgatgtattccgtgggctaggttggttttcagacccttatagtacctggtttcactgcttcattagatagtgataatctcagcatttcaaatctatgagtagtcgttatgttctttcaatctactaatcttaatctatggcttgattcaaatgagatgatatttgtttgcaaggaatatttcttatactggatgtttgacacgctggttgcaagatctgattaactcctggttttgtagaggtggtggaacatgcttgtggaatggggacactgcagatgggtgaatatgtatcaaatgtttctaacgggattgacacctttagcattagggagccacttggtgtatgtgctggaatatgtccattcaattttccagctatgatccccctatgggtacgcacaacttcacttcttaatatcaaaatttgttattattacgactcttagcccaattatcaatataccatgcaatacatcttactttagtcaacacgccatgatttgatcgtttcatttgtttcttctttccgtttggctgcagatgttcccaatagcggtcacttgtggcaatacttttgttctaaagccatcagaaaaagatccaggtgctttgctttatcatcatttttttacccagtttattcactacacccgctgttgttgcattgacgacaatttaaagccagataaaaatatatggttaaatgcttatctgatattacagagcgggttaaccaagctgtacttttctccacaacatataagatcattgattctatgtattcactatatacatatccatttggtactataactttgggggtgtgtttttactataacatatggtgaagttaaacatttggtgcacagttatctacccaaattggacatttccactacctactgctataaaaaaaccagcagtaagttttaactctttggaggtagtagcaagacaaccttttacaattccattgagatattaataaaaacagattacatgttgctttacaatctttgtgtacatggcaaggacttaagatggagtgaaaatatgacatgtttttgtgaactggcactagtagtatttctaaggcatgaaaaagatatattataaagtagcaattgttgttcatgtccttgaagaggctgtaatcttagtctagtagaacaaaagaaggcacatgacatgttcctgttagtaatgtgatggcatactttgtaattattggttactacttcaggggctgctatgatgcttgcggagctagcaatggaggctggtttaccaaagggtgtgttgaacattgttcatggtacccatgtacggtaaccttggttactcttcgtccttcctttttttttttccattttttgagctcgatactagattaaataatttatttgttgtgcctgttggtgccaagtgttgctacagcacaaatagatattcgatgattgatattttctggctaacatgacaataattttactctttcttggaacactggcaaaaaaaaaaagttgccttgaaacttcaccttaccatgcttagctctgtagggattgtttggtcttcatggttatatgatgctatttttactgctaaacattcatgaatctgttcatctttagccgccacacttgctaagctgctttctgattctaccttactatttcaggatgttgtgaacaacatttgtgatgacgaggacatcaaggcagtttcctttgttggttccaatatagtaagcggatccaaatgatctgtctatttctcgatttgtggtaccatttttgcatcaatcatctgtctattttgctctgcataatactttgcaaatctggtattcatcctattctgtttcagtctttaggtcattaacttggcatctaggccattgcattatcacacacttctacatgtttgagatcttttcaatcttgtattcttatgttgtcataatggttcaaattctgattatgatctaacttataaaaattataaatttaccagttaccatgatggtgataaactgataataaacatgtatacacagcatgaggatgttttcatgatgttaggacattcggttgtaaaatttacttgtaaacaattatgttagatccgtatagcacatgtcacattacactcatgatacctgaatcattctttattttatttttgcccaaagctagtcatttgtttcagcagatgatataattatgatctctctctcactctcaggctggtatgcatatatattctagagcatcggcaaaggggaagcgtgttcaggttagtttgcacctgttcctgacatgcagaacctttccttcgaaaacttctgcctggtgtgctgtaagcagcatgttacagaatgcctttttgtttattttcagtctaatatgggtgcaaagaatcatgcaattatccttcctgatgctgaccgagatgccacactgaatgcccttattgctgctggttttggtgctgctgggcaaaggtgtatggcattgagcactgctgtttttgttggaggttcagagccatggtatatacttctgtcctgtttgtttcttcaggataagacctggcattaggtaatgaagtataaaaataaccatttgtcttgtagggaggatgagctagtcaaacgtgcaagcagccttgtggttaattcaggaatggctagtgatgcagaccttggtccagtgatcagcaaacaggtaaaccatctgcttttttaccaacgaaaaggttgttgacctgattttaagtaacctaaatatgaagtggaatcctacttgtacttccctgttacttggaacactgaactggatttgtgctcccccccccccccccaaaaaaaaaaaaacttgaatggtcctctaatcgtgtatacacattgaaatcatctagttcagatattattttggtacctaaacttatcctaatgtggacttctcttggtacttatgtaggataggttatgaacatttatccttttatgccatgatttctatgttgactcaacacgtgaacttaacatccccagatttcaagagtgttaacattacatagccaagtaatgacttgtaaagtttctgtattttttgatctcgtctgttcatgaatgaacctgttgtgttgagattgattacagtttagcgatagtgatagtgcatgaaattgcatttgaaattcaaaaaaggctacttctgtttttttttggttctgatgagactgttggtatgtggtatatattttctggaaatatatattaccttttggggcttggctgcgagtattattagcttcagattcataatgattgtggctactacattggttacgctcacagtttttatgctattttcttgtaaatataaatttataacattttctaccttgtcatttctgttttcctttttctcaatatatcctgtcttaacagtttactatcaacaggctaaggaacgtatctgcaaattaatacaaagtggtgctgataatggtgctcgtgtgctgcttgatggaagagatattgtggtaattttagttcagttgtttccttgcctgcagttctcccctggttcttatgcagcaatgcataatagtgctaaactgtgctaaattttgcaggttcctaacttcgagaatggtaattttgttggtccaacactccttgctgatgttaaaagtgaaatggaatgttacaaggtattattctgaaatttgtcattttaaactctgcattaggactgatgtttcttgtttgaagagccatgaaaggaaggaaggttgcattattagcctcctgcaaagctatttgttggattagtgctgtctgtgttctaaaaattaaaacatggaatgcatttaaggatatattattttctaattgaagtgctaactgtggacctatttgatactccctccgtcccaaaatataagcatttttagactctgatacgatctttgatatgctactttgaccaacaatatctgtgaaagtaagatgttttaaataaaaggagttacatattatgatagattgtttaatgataaatctagtaatatcaattttacatgattgattgttttttttttgctattaatagtcaaagttaaaaatgtttgacttgttactatgctaaaaatgcttatattttgggacagagagagtattaatttatttgggactatgatgtatctttcttttcaggagtgtatttgacctatgcttttttaaaagaattatatgattttgtctggagaccaatgtaattaacaatccaaaacaaggaaatggcaaagcagataactcgcctattgcatggtatcaaatctcagtattgctcactttcccatttataacttgcaagacactgttctcctcaagtagacatccttgttgcagtggccgacttttatttgttgtcctattgttgtttcttcctcctaatgccccctatgatcacgagctgagacaattgtcacagatacctagtatagctgtaccagtttatgattcatgaacattgtcatatgttgcagtgacagccgttgcatacttagaagccgcatatgcattatattttaactgaactttgctaaattgaaacaggaggagatttttggtccagttcttctcttgatgaaggtatgtgaaaattgtttcccttgctatgcacaataaaagatctgttacactgctgaccattttctctgttacaggctgagagcctagatgatgctatccaaattgtgaacagaaacaagtaatgctttattgatttattccttccatgtactagatagtcctgattgagcacatgttgaaattttgaaaatcttcctacatttctttgtgtgtcagatatggcaatggagcatccatatttacaacatctggtgtgtctgcaaggaaatttcaaacagacattgaagctggccaggtattttgtagtctctttcttacaatacactacatctctcccacgttcgagaaataaaaacgcgcggacatttcatgcatgctaactaggcctagctagacagggcctgaaaaacaggtttggagaaaatatgataactaaagtaactgaaataaacccagatttttgccatttgctaaatcaaattcaaacacatatataaagtgagaagggccccaagcccagctataacttggagcctgaactttgaatttgcatgaattctaagttagcagaaagcaaatctccactgggcactgatgcaattgataaatttgtcgatatgaattaaccttcacaagaacttggattgttcacagtttgtggcttctcccctttgcacttcgcaggtgggcatcaacgtgccgattccagtacccctgccgttcttctccttcaccggcagcaaagcctcctttgcaggagacttgaatttctacggtaagagatcaacactctcgatctaatctcactttgatcctttcccaacaattgcaatgggctcaaagctatatccaactacggccgtatcgatcatctgaaaagaaactcgctcaatgaaacattgccgcgtggcgtgcaggcaaggcgggcgtgcagttcttcacccagatcaagacggtcacgcagcagtggaaggagtcgccggctcagcgcgtctccctctccatgcccacctcgcagaagtgaggtgaaaaaaaagaaaggcatcttgtacgttcttcatttgcccatccatggaaatagacacatgcaccaatgcgaaatgaacagaagaataatcgataggcgcgggatgccatgccatgccaataaaggtagctggtctcgtatttgcatatgcctcatttcaagcatttgcgaaatgaggttatctagatttgtatggctcatttcaagcatttgcgaaattgcattatct</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0188800, RefSeq:Os07g0188800