Os07g0194000

From RiceWiki
Revision as of 08:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0194000| Description = Similar to Vesicle-associated membrane protein 725 (AtVAMP725)| Version = NM_001065644.1 GI:115471020 GeneID:4342638|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os07g0194000

Description

Similar to Vesicle-associated membrane protein 725 (AtVAMP725)

Version

NM_001065644.1 GI:115471020 GeneID:4342638

Length

3783 bp

Definition

Oryza sativa Japonica Group Os07g0194000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:5127868..5131650

Sequence Coding Region

5128023..5128212,5129496..5129637,5129727..5129847,5129951..5130013,5131114..5131260

Expression

GEO Profiles:Os07g0194000

Genome Context

<gbrowseImage1> name=NC_008400:5127868..5131650 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:5127868..5131650 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggcagcagtcgctgatctacgcgttcgtggcgaggggcacggtggtgctcgccgagtacacggagttcaccggcaacttcaccaccatcgcggcgcagtgcctccagaagctccccgcgagcaacaacaagttcacctacaactgcgacggccacaccttcaactacctcgtcgaggacggattcacatactgtgtagttgctgttgaatcagttgggcgacaaatccccattgctttccttgacagagtcaaggaagatttcaccaaaagatatggtggtgggaaagcagctactgctgcagcaaacagcctcaaccgagaattcggatcaaaacttaaggagcacatgcagtattgtgtggaccaccctgaggaaatcagcaagcttgcaaaggtcaaagcacaagtctcagaggtcaaaggagttatgatggaaaacattgagaaggttcttgaccgtggtgagaagattgaactgcttgtcgacaagactgaaaacctgagatctcaggcacaagatttcagacagcagggtacaaaggtgcggcgaaagatgtggttacaaaacatgaagatcaagctgatcgtcctgggcatcatcatcgcgctcatcctcatcatcatcctgtccgtgtgccatggcttcaagtgcaagtga</cdnaseq>

Protein Sequence

<aaseq>MGQQSLIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNN KFTYNCDGHTFNYLVEDGFTYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAA ANSLNREFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE LLVDKTENLRSQAQDFRQQGTKVRRKMWLQNMKIKLIVLGIIIALILIIILSVCHGFK CK</aaseq>

Gene Sequence

<dnaseqindica>156..345#1629..1770#1860..1980#2084..2146#3247..3393#ctcatccccttttcccttctcctccaccccccccccccaaccacctcaccgccgacgacctcatcctcgtcggcgccgtcggattcaccagcgagggaggttgcggcggcggcggagagcgcgagggaggaaagcgggggaggtgaccgccagcgatggggcagcagtcgctgatctacgcgttcgtggcgaggggcacggtggtgctcgccgagtacacggagttcaccggcaacttcaccaccatcgcggcgcagtgcctccagaagctccccgcgagcaacaacaagttcacctacaactgcgacggccacaccttcaactacctcgtcgaggacggattcagtgagttcctcctcctcctcctcgatccaatgatcgatcggtctccctcctcggcgaggccgcgcggacgccgatctgcctcggatccgcaacgttgcgtgctcgatttggggttctccatgcgtgtagatctcgcggggtttgttcgatctgtttcggtaggcctggggcctcgagtggttggatccgcttggactccgagctgacttgcggggcgtgctagtgctatctagcgtgtgctgcttgtgcttcggtttgagttgacgaatgctagagagggaggctaggtgttgggaattggctatatttagaggaggctcgggtgtttccatgtgtgattgcatgctagaatcaggaaatttatagacgtgtttgcgttttgaatgtgttatttgactatatcaaatattttttaggctctaaccgcatcggcatactggggattcagggattaggtgattggtgcgtttttcgattttgcatttctggacgattcatggacatatctaactaacttatcaaatcaaaatggtgtgatacttatctttcatattctactttgtgatgatcagaagaggcattaaaattgtgtcattcttgcgggcacaagtattgtatcggggcagtctagcatattttgccttttcttatgttcaaactgggtgaccatatttccattattatggtaatgtgaaaatgacatcaaaaggctacttcaaatttcatttggtacttcattgaataggttgcagtatattattatggaataaatgctgtttagttttaggtaggatgcaagttcccaatccaattgtttgcattgtttttgaacaaataaacaattaaggcaagacatggtttcatagtgcaagaggaattggatgtggggctaacattacgtagtcaagggaagattcataactgttatcttgtattaggctgtggcgtgcatgattgagtaattagtggaaggttatgaaggataacaaaaaaagcaggaagatgggtggttagaaagtttttttttcccccacaggcaaactgttaaggtagcacccacccttttatggtaaattgaatatgttacacaatttaaacagtctaaattggtttgcaaacttgcgtcatctattttttggaaccattctaaattgcttggtcaccctaaaacaactattttcattattttgatcttttggtactttgatgttttcactttctaacacaaactcatgatgtgcattgagattaattatcatttccatttccccccctttgtgcagcatactgtgtagttgctgttgaatcagttgggcgacaaatccccattgctttccttgacagagtcaaggaagatttcaccaaaagatatggtggtgggaaagcagctactgctgcagcaaacagcctcaaccgagaattcgggtatgttcattttgcttttatgtgatattcgagcatggtgtgggctttctttcttttgactgatatttgtttgtctctactatttaaagatcaaaacttaaggagcacatgcagtattgtgtggaccaccctgaggaaatcagcaagcttgcaaaggtcaaagcacaagtctcagaggtcaaaggagttatgatggaaaacattgagaaggttcattcttaaatcatccaatggtctgcacattatgttctttaaaaaccatgatgctcttcaaaggttgttgctgattctatattacaattatgaaattcaggttcttgaccgtggtgagaagattgaactgcttgtcgacaagactgaaaacctgagatctcaggtattaacgttttccttcatgatgtgctgtactagtttctttatctttgaagttactgttgtgtaacacagagaatttagaactgcaaatcatcttatagaactcaggaatctttatacaatggattgctatggagaaattactgatacatgttagtgtagatcgcatgagagtatggagtatggtaatggtatgttctagaatttagtgcattataataaaaacattctgaataagatttaagtaggacaaatctagtctcttttactcaatgcatccaaagcattgttactagaattttgatggctttgttagttgaagcatcattgttagtagggaagggatggtttcattaattgaaacatcaatattactggacttctatggtagttgaaatgttatcatctctagaataatttttcagaatttttggaacatatatgccaagatacaagattgccctaaagaacaagatatctcgtggtctgttttagcctatgtatttctgttttgagctgactagaaagcttccatgtcgatgctggtgtacatatgtagaagtaccgcattatggttccaaaggtgatctggcttactgttgatatggtatagcattattactgtgctgcgactgacatgtagtaatcctccacaccatctgctgttataactgatgtgcacccggctaggcagaaggaaattatgaactattttaactcattaattaactcagcaacttttgatgtataatacattattactatgctacaacaagcatatagattccttcttaccatctattatactgttcaagctgaataatttgatgcacaatgagatgcttgtagtggttggagatgcttgtaatgatatgcaactatctgagctttgcttatttagctcctatgagcgatgggaagtagcagctgttgaaattaactggattaaacagtgtgagacacaatatagatgctttggatgatactgttaaagaaaaccaatgaatggtggcacttatggattatgcactttattctgtcttggcattttggaaatgcacatagctttcttcgttcttaaatcaaaactatgggttgcaggcacaagatttcagacagcagggtacaaaggtgcggcgaaagatgtggttacaaaacatgaagatcaagctgatcgtcctgggcatcatcatcgcgctcatcctcatcatcatcctgtccgtgtgccatggcttcaagtgcaagtgagggtgttggcttcccagtcctccacattcaccttgccccccataataccgcctattcctggcgaaaaaaaagaccatatgtttttttttgttctgttagtcatgagtcctgccccgattcttgggtgttcgagtgtccctgatgtcgcgcttgattggtgtcggatagtgactgggtttatgggtcggagtcccgtgtatttttggacgctattcatgtatagcctgtatgctaccctcttttcgctctgctatatgagtagtaggtgttactacgtttgttcccccactttatatcttctcttactccacagctaaatcttagtaagaaggaacaacttgcattttcaaacctgtgatcttcataaataattttgattttggagagatt</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0194000, RefSeq:Os07g0194000