Os07g0200700

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Revision as of 08:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0200700| Description = Similar to Squalene synthase (EC 2.5.1.21)| Version = NM_001065664.1 GI:115471060 GeneID:4342663| Length = 5428 bp| ...")
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Gene Name

Os07g0200700

Description

Similar to Squalene synthase (EC 2.5.1.21)

Version

NM_001065664.1 GI:115471060 GeneID:4342663

Length

5428 bp

Definition

Oryza sativa Japonica Group Os07g0200700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:5472509..5477936

Sequence Coding Region

5472618..5472818,5472943..5472985,5473672..5473761,5473863..5473938,5474435..5474504
,5475261..5475404,5475547..5475651,5475876..5476022,5476532..5476607
,5476901..5476989,5477392..5477483,5477559..5477598,5477686..5477745

Expression

GEO Profiles:Os07g0200700

Genome Context

<gbrowseImage1> name=NC_008400:5472509..5477936 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:5472509..5477936 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggggtggtgggggcgttgctgggaccggaggcggaggcgctggtgaggctgcgggcggcggcgtggcggctgcggagggaggtcgccgccgccaccgacgacgacgagcactgggccttcgcctactccatgctgcaccgcgtctcccgcagcttcgccatcgtcatccagcagctcggccccgacctccgcaatgccgtgtgcgtcttctacctcgtgcttcgggcgctcgacaccgtcgaagatgatactagcatccctactgagattaaggtgcccattcttcaggaattccaccgtcatatctataaccgggattggcatttctcatgtggaacaaaggactgcaagattctgatggataaattccactatgttttgacagctttcttggagcttggttcaggataccaagaggcaattgaagaaattaccaggagaatgggtgcaggaatggcaaagtttatatgcaaggaggttgaaactgttgatgattatgatgagtactgtcactatgtggcagggctagtcggcattggactttcaaggctctttcatgctgctgggttagaagatcttgctcccgaatcgctttctaattcaatgggtttatttttgcagaaagtcaatattactcgggattacctggaggacataaatgagataccaaaatcacgcatgttctggccacgagaaatatggagtaaatatgttgacaaacttgaggatctcaaatacgaaaataattcagtgaaggcagtaaaatgcttgaatgagatggtgactaatggtttaatacatactgaagattgccttcggtatatgtctgctctaaaggatattactattctccgtttttgtgcaataccccaggtaatggcacttgcaacctatgctctgtgctataacaatgtgaatgtatttcgaggagttgtgaagttgaggcgtgggctgactgcacgaataatcaatgaaacaaattctatggctgatgtgtacactgctttctatgaattctcttcactgcttgcagaaaagattgatgataatgatccaaatgcgtcgcttacacggaaacgtgtgaatgcaataaaggagacctgcaaatcatccggtttgctgaagataaggggatatgacttggataggccaaaaaggaaccctgctatgatcatgatgctactgctgctcttggtagctattttcttgggagctctgtataggaggtga</cdnaseq>

Protein Sequence

<aaseq>MGVVGALLGPEAEALVRLRAAAWRLRREVAAATDDDEHWAFAYS MLHRVSRSFAIVIQQLGPDLRNAVCVFYLVLRALDTVEDDTSIPTEIKVPILQEFHRH IYNRDWHFSCGTKDCKILMDKFHYVLTAFLELGSGYQEAIEEITRRMGAGMAKFICKE VETVDDYDEYCHYVAGLVGIGLSRLFHAAGLEDLAPESLSNSMGLFLQKVNITRDYLE DINEIPKSRMFWPREIWSKYVDKLEDLKYENNSVKAVKCLNEMVTNGLIHTEDCLRYM SALKDITILRFCAIPQVMALATYALCYNNVNVFRGVVKLRRGLTARIINETNSMADVY TAFYEFSSLLAEKIDDNDPNASLTRKRVNAIKETCKSSGLLKIRGYDLDRPKRNPAMI MMLLLLLVAIFLGALYRR</aaseq>

Gene Sequence

<dnaseqindica>110..310#435..477#1164..1253#1355..1430#1927..1996#2753..2896#3039..3143#3368..3514#4024..4099#4393..4481#4884..4975#5051..5090#5178..5237#gacgcgacccagtgaccaacccaaatcaaagccgacgcgctcgaagccgctagaagaagaagcagccatccgagtcgtcatcggcggcggcggcggcggcggcgaggcgatgggggtggtgggggcgttgctgggaccggaggcggaggcgctggtgaggctgcgggcggcggcgtggcggctgcggagggaggtcgccgccgccaccgacgacgacgagcactgggccttcgcctactccatgctgcaccgcgtctcccgcagcttcgccatcgtcatccagcagctcggccccgacctccgcaatgccgtgcgtcccctccctctccctctcctcgtccgcgaccctctcgattgatccagtacctgatttctcaccaccatccccttcaatttggggggatttcttcgtttttcgcgtggcgtgcgtgcaggtgtgcgtcttctacctcgtgcttcgggcgctcgacaccgtcggtgagtaactcccacgttgtgttttttttcccgagatttctgcactttgcggtcgtagcatatgtacggtattgcaagcaacatgaacagtttatgaactgcaaacaaataaatacattttccctttttttttcttatactgatttgagcgagcgaagtgagtatgtacaagctcaacatctataattggctatacttggtaagcatttattaaaaaaaaatacgtatagacttttcctttatgtaactcgttttcgtattgtagctgttttttcttttatggtttgaggacaactgcaaagtctgtgcacaaaccacctcgttttcatatgggtactgacgttgagatgcttttatggttacttttccaaagaaaagcagtggtgcataatgcttagtacttttttttccatttttgtcctctctacctttttaaatttacaaatttgaggggaaaaaagaatggaaatgccactcaccaatgtttacattttttgtcacaaatttgttgggaattgtcagtagtaaactgcactgaccaattagcagtgcaagagagaattgatagactttcaaacaagaggtgatagggcatgggggtacaatgcatttctttttttggtttaatccttctcttgaaagaattttcttcttaaatttatagttctgttctgattggagtgcagaagatgatactagcatccctactgagattaaggtgcccattcttcaggaattccaccgtcatatctataaccgggattggcatttctcatgtaaggcaaaaaatttcgtgtccatgtgaatttactatacatgtgtttcataagttgtaactatcttagtccttcgcttgttggcatcacgttggttccaggtggaacaaaggactgcaagattctgatggataaattccactatgttttgacagctttcttggagcttggttcagggtaaattccaagtagttttaatctctttgtatgatcaatattttcttgttaacttctttggacattgtaaaattttagttactttggcagtttggcctgatgacagtcacttgacatcattgatattacatatccagtcagttagatgtcctcatatgaaatcaaacacttatttccaattaagctatatctagatgatgttagatatgtataatcatttacacatcaggaaggaatggtaattaatttcttactctcaaactataaggtcacatgttaattatgttatatgcttagatcattgtttgttttggcttgttccacaatgcttccaaattagtaaatgaaggacaatcaaatgggtcaaaccaaaaaaatggagttatcaagtatcaaccctatgacattgattagtattttaattcagaattatctagtctatgtaagtggtcccattcaagtagaagaagcaatacatgtttactctgttatccagataccaagaggcaattgaagaaattaccaggagaatgggtgcaggaatggcaaagtttatatgcaaggaggtatattgttccttacagaataatatgttccatattgtcagaagcaataatatcataatgaagaaaagtttgctctgcttgtaaatgttatctgtatagaagcccttctgtctgactgtagaatagcagaatatagcttttgtattctagatctattagaattgatgacacaacagttgatcttgttgtacagcatacatagaggatgatatcatttgtcgttaagctgctcagtatgccattatagatctcaacattaatagctatgggatgctccctatagaaggtttttcatgtgttgaaaaactgtgcagatatgcttatcatgtaatcagggtccatttgatgaatgataaccataagctaatgcaaagatgtggtcatagcattcttgctgccgttccagttgttatctgttattttggcttgtgctcctggccatttacatatgaataccagtttgctggcaaaagcatggcttcagcctaatcacctagtatgcagtattcctaagcctacagccatgcaaatagcatttgtgtcttattgtatttacgtcggcctctgtgtggtaaagctaactgtctcactgcactcaaaagtagtctatgtatgtttcacctgaatcctgtaatataccatcagttatttccacaatcctatgacgattttttatctgcatcatttacataaagtcatttgaatgtagatgatgatcatatcttgccgtggactaatatgaagagacctttttaggttgaaactgttgatgattatgatgagtactgtcactatgtggcagggctagtcggcattggactttcaaggctctttcatgctgctgggttagaagatcttgctcccgaatcgctttctaattcaatgggtttatttttgcaggtatattgataattattctagtctggtgtttggcttttgacttgctgaatacaatcagagcatcctcaccttgtctggaaactcaccttgttggcaactcaccttgtctggaaacattttttacagtttaaatctattgcagaaagtcaatattactcgggattacctggaggacataaatgagataccaaaatcacgcatgttctggccacgagaaatatggagtaaatatgttgacaaacttgaggtatacgggtgcatctattttgtgtaagggttgtcataccttcgtctgttttcagacctgatatatattgttttgattacttttttgacactgatttttattaaatatgggtcacccaacttgtacttttgtagtatgctgaattttagatagagtagttatgcggaatgtagaattatcttctctgtttattctgaagaacttttccttttgtatcaatgcaggatctcaaatacgaaaataattcagtgaaggcagtaaaatgcttgaatgagatggtgactaatggtttaatacatactgaagattgccttcggtatatgtctgctctaaaggatattactattctccgtttttgtgcaataccccaggtatattatgtattcacacctcaatccattacaaatttgggatggccttctaaaatttcatacgctcgccaaactagggtttatggtctgtggttggtcatattcaataccatttgatgctgtataaggtttaactagtgacaattgttttatcacttttggagttatttgagaaataacatgaatatcatcaccacttgataggtgatgggacaatgattaccactgaccaatcagattgtctgtatttttttctatagaaaatcatcttcaagacctctgtaccccgtttatgaccttgttgctcatttggttgaagttggattaccatcttaatttcacacacatggaggctgctggtcagcttccttggttctgaaatgtttggcaagcctatattttctctttgctctgtgttcttgtctctgttcttttgctagtctagtctgctttcttctactgaaacggcaacttattttatatgtaagcaaagagagtttatttttcaggtaatggcacttgcaacctatgctctgtgctataacaatgtgaatgtatttcgaggagttgtgaagttgaggcgtggtgagtattttgtgattggcatatttagaagacacaaattagtaatagctttatataacccgcacagttttttttttttgcatatttcttgttcataaacacctttgtgctattatcgaattggttattggttcaaacaatagcttcatatataaagggcatgcatgttttaaaaaattcatattttgtgattaatgtatgagttattcttgtatctccactctctatttgctcttgtctgttattttgtctgcgttggtttttgttctaacagcattcttgcactctcatagggctgactgcacgaataatcaatgaaacaaattctatggctgatgtgtacactgctttctatgaattctcttcactgcttgcagaaaaggtagatctggagtattatcttctttagcattcactatgttgggtaaaataagataaaatatgttaatttttaacagctcatctctacactagtatgtagtttttctaagactatctaaaatattcaattatgtcctagctgttttaacatagcatataaatcggtaatattgctttgttgcgtttgagaaactaacatgaattggtatgcttgtcatttaattgtgttttgtcatttttttttatatgtgacataagtcaatttcctcaaatttaattgtgttttgccattttatatgtgacatcagattatggtttcaataatctttctgtttattttgtaccttcaatacttaaaaagattgtgttttcttagacaccaccatcataaccactgtttcagattgatgataatgatccaaatgcgtcgcttacacggaaacgtgtgaatgcaataaaggagacctgcaaatcatccggtttgctgaagataaggtttgtccagtgatctaaaaccatttctgcagctgatctcaactcgacttatcattcacattgttgattctacaggggatatgacttggataggccaaaaaggaaccctgctatggtaaataatgcatcaacttaaaaaaaaatctgataattctagttatggtctactaccatttataattttcctgtttgactttcgcagatcatgatgctactgctgctcttggtagctattttcttgggagctctgtataggaggtgatcgatcctctgtaatgaccacctacgtacctttctattcaacaatcttataacctatattgtttcagcccatgagaccaccataaacatatttttgtatcagtactgttgtataagtggaagactaacgttagatgttgtgctggttgctaatggtcaatttagcacgtcaagctatatctctgatagttc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0200700, RefSeq:Os07g0200700