Os07g0201100

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Revision as of 08:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0201100| Description = Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)| Version = NM_001065666.1 GI:115471064 GeneID:4342...")
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Gene Name

Os07g0201100

Description

Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP)

Version

NM_001065666.1 GI:115471064 GeneID:4342665

Length

7377 bp

Definition

Oryza sativa Japonica Group Os07g0201100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:5484325..5491701

Sequence Coding Region

5484553..5484601,5484836..5484933,5485028..5485078,5485744..5485857,5485938..5486138
,5486240..5486341,5486879..5486986,5487053..5487286,5488250..5488500
,5488592..5488763,5489165..5489320,5489405..5489455,5489592..5489732
,5489814..5490014,5490105..5490236,5490308..5490481,5490755..5490994
,5491213..5491407

Expression

GEO Profiles:Os07g0201100

Genome Context

<gbrowseImage1> name=NC_008400:5484325..5491701 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:5484325..5491701 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaagagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgacccgcagctcgacgcgcgccgttgctgccaggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgcaggccttaggagaatggtgtacctcatgatcaaggaactctccccatcagcagatgaggttatcatcgtgaccagctcgttgatgaaggacatgaatagcaagactgatatgtatcgagctaatgcaataagagttctttgccgcatcattgactcaacacttctaacccaaattgaaagatatttgaagcaagccattgttgacaagaaccctgttgttgcaagcgcggcccttgttagtggcatctacttgcttcagacaagtccagaagttgtgaaaaggtggagcaatgaagttcaggaggctgtacagtcgagagctgctcttgttcaatttcatgcccttgctcttcttcaccagattaggcaaaatgaccggttggctgtcagcaagcttgtcactagtctaactaggggttctgttcgctcacctctggcacagtgcctacttattcggtacactagccaggtgattagagagtcaagcatgaatagtcaaggtggagatcgccctttctttgatttcctggagtcatgtctccggaataaagcagaaatggtcatacttgaggctgcaagagcgataactgaattaaatggcgtcaccagccgggagcttacacctgcaattaccgtgctgcaattgttcttaagttcatcgaaacctgttctcagatttgctgctgttcgaacacttaataaggttgcatcaactcatcctttggctgtcaccaattgtaacatagatatggagagtttaatatctgatcagaacaggagcattgctacccttgcaattacaacactacttaagacaggcaatgaatcaagtgttgatcgcttaatgaagcagatgaccaattttatgtcggacattgccgatgaattcaagattgttgtcgtagaggccataagatccttgtgcttgaagttccccctaaaatatcggtcactgatgaactttttgagtaatatcctacgggaagagggtggctttgagtacaagaaggctattgttgattcaattatcatactcattagagatattcctgatgcaaaagaaagtggtttatttcacttgtgtgaattcattgaagattgtgagttcacttatatgtctactcagatacttcactttttgggaaatgaaggtccaaagacatcagatcctagtaaatacatacgttatatatataacagagtgatacttgaaaatgctactgttcgagctagtgctgtaagtactttggcaaagttcggtgcattggttgactcactcaagcctcgaatttttgtccttctgagacgctgcctgtttgatggtgatgatgaggtgcgtgacagggccacgctttatctcaaattgcttggcggggaagctacagttggtgaaactgagaaggatgtgaatgaatttctctttggttcatttgatattccactagttaacctggagactagcctacaaaactatgaaccatcagaggcaccttttgatatttcatctgtatctttggaaactaaatcacaacctcttgctgagaaaaagactacgggcaaaaagccaacaggcccagcatctgctctcagcggtccagttcctactgttgatgcctcatatgagaagcttctttcatccattcctgagtttgctggttttggaaaactctttaagtcatcagctcctgtagaattgaccgaagctgaaactgaatattcagtcaatgttgtgaagcacatttatgacgggcatgttgtgctccaatacaattgtaccaatactatacctgaacagctgcttgaagaggtggtggtttttgtggatgcttctgaggccgatgaattttcagaagttgcaacgaaatcattaagatccttaccttatgattcaccaggacaaacctttgtggcttttgaaaagctagaaggtgtccttgctactgggaagttctcaaatatactgaaatttattgttaaagaggttgatccatccacaggtgaagctgatgatgatggcgttgaggatgagtaccagcttgaagatctggaaattacttctgctgattatatgttgaaggttggagtttctaacttcagaaatgcttgggaaagcatggatccagaaagcgagcgggttgatgagtatgggcttggcgccagggaaagcctggctgaggctgtgagtgctgtcataggcatccttggcatgcagccctgcgagggaactgatgtggtcccaagcaattcgaggtcacacacttgcctgctatctggtgtgtttatcggcaatgtgaaagttttagtgaggctgtcattcggacttagcggaccgaaggaagtggccatgaagctagcagtcagatcagatgatcctgagatcagtgacaagatccatgaaatcgttgcaaatggctaa</cdnaseq>

Protein Sequence

<aaseq>MAQPLVVKKDDDLDEEEYYSPFLGIEKGAVLQEARVFHDPQLDA RRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSA DEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVAS AALVSGIYLLQTSPEVVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLV TSLTRGSVRSPLAQCLLIRYTSQVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEA ARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNID MESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSL CLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESGLFHLCEFIE DCEFTYMSTQILHFLGNEGPKTSDPSKYIRYIYNRVILENATVRASAVSTLAKFGALV DSLKPRIFVLLRRCLFDGDDEVRDRATLYLKLLGGEATVGETEKDVNEFLFGSFDIPL VNLETSLQNYEPSEAPFDISSVSLETKSQPLAEKKTTGKKPTGPASALSGPVPTVDAS YEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVNVVKHIYDGHVVLQYNCTNTIPE QLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVAFEKLEGVLATGKFSNILK FIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGVSNFRNAWESMDPESERVD EYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIGNVKVLVRLS FGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG</aaseq>

Gene Sequence

<dnaseqindica>229..277#512..609#704..754#1420..1533#1614..1814#1916..2017#2555..2662#2729..2962#3926..4176#4268..4439#4841..4996#5081..5131#5268..5408#5490..5690#5781..5912#5984..6157#6431..6670#6889..7083#gcctactgcccatttgccacccaaccctactacccccttcttctctctcccctctcgtcctcgtccgcttccagattcagatccacccatcgtcgtcgtccatgccgctcgcctccttttctccactgtcgtaagccctcctcctcctcctcctcccacgccgccgccgccggtgcccccactcgccgccgtgcgcgcgtcccgtagttcgccccaccagcggccgccatggcgcagccgctcgtcgtgaagaaggacgacgatctcgacgaggaaggtgcgtctctctctctctctatgtgtgtgtgtgtgtgtgtttggttcgggtttggtgcgcgcgcgcgcgcgtggggttcgggtttggggcgcgtgcgcccccgccgcacccagatctgcggccgcggcgggctagatctgggcgcgatccagatcacggcgcaatgcgttggcgcgtttgatcggttcgttgattgatcgctcccgtttgctgctgctgctgctgctgctgcagagtactactcgccgttcctcgggatcgagaagggcgccgtcctgcaggaggcccgcgtcttccacgacccgcagctcgacgcgcgccgttgctgccaggtgaaccgcgtgttccgtttttttctttcccctttcgctggatctcgcatcattggaagattgctgatgatttgatttacctgtgtgtctgtaggtcatcaccaagctcctatacctgctcaaccagggtgacaccttcaccaaggtacaatgctgtatacctcatcttgctttggtcacatcttggcttagcttgcggatttgaattgatagcgtctccatgttatacacatttatgaagactagcaaaataaccgtacgttgttatggaatttagaaaatcatgttggcacattgaaaaaataaatctattttcagtttagagcttaattttagaattaaattagatgtttctttatctagccgcaaaaaattttagacggaccgaattgacttatcattactgcataattccctccattaaaaaagttacatcatcaacggtccatgaattctaccattgtatttggttttgagaatgatgggacatgtgggtctcacgtcatagttttagggagttggtggtgggtctgaaaatcacatgtattattaacatgtagacagtgttgagctactacttaagagagagaaagtgagtgagtggtggtcagtagtcatagactaaaggcccaacttttgccttaatgaactggttacaaacattagttttaaaagaagaatggggatcgactggtgtgcataagtgcatgttggtatattattgttttctctcatagatgtgagtaagttttgaatgtgttgttcaaggcaatatgctcgtcacatgtaaatgagtgagcaattttgtaggtggaggccacagaggtcttttttgcgacgaccaagttgtttcaatccaaggatgcaggccttaggagaatggtgtacctcatgatcaaggaactctccccatcagcagatgaggttggtgaatgttgattgttactttgcagttctctgcagtctatggatctttgaaagtgtctgtgttacatttgttgcaggttatcatcgtgaccagctcgttgatgaaggacatgaatagcaagactgatatgtatcgagctaatgcaataagagttctttgccgcatcattgactcaacacttctaacccaaattgaaagatatttgaagcaagccattgttgacaagaaccctgttgttgcaagcgcggcccttgttagtggcatctacttgcttcaggtatgtgcaaaacgtttagtctttgcctttatgcaattgcatattacagccagacccaaatccttacaaatgttttgtttgtatggttttattctgagcagacaagtccagaagttgtgaaaaggtggagcaatgaagttcaggaggctgtacagtcgagagctgctcttgttcaatttcatgcccttgctcttcttcaccaggtgagatttatgtttggtttttactactccctccatcccaaaatataaggcataaccactcataacacaaagaccaagaaaacatttaaccaccttcttggttggatcaccttgatgcatgcaagcaatgtgattgggaggtttgatagtgtaagatttaaaacaaatcaattttataggaccaaaagatgctagttaatgtatgcatgcatgcacgccttatattatgagacatgagagaaaagtggttgtgccttatattttgggatggagggagtagtaagtagaatgaacattagtatctgaaatatcttggacctaaacaaactacttttagatacctaacatttttaataatattctatagaaacttttctggtcattctcctagtaatgtcatttggtcatcctccatgtaaatgatactcagctctttgttttgttgccacctgctaggcaattgcaaataatattatgttaaaacaagcttgtcaagctcagggaacttacagcgtttccatttattgaattctacagattaggcaaaatgaccggttggctgtcagcaagcttgtcactagtctaactaggggttctgttcgctcacctctggcacagtgcctacttattcggtacactagccaggtaatgttttttgattctgcaaaactttatttggatagatatctgatacatgagtgccatccataggtgattagagagtcaagcatgaatagtcaaggtggagatcgccctttctttgatttcctggagtcatgtctccggaataaagcagaaatggtcatacttgaggctgcaagagcgataactgaattaaatggcgtcaccagccgggagcttacacctgcaattaccgtgctgcaattgttcttaagttcatcgaaacctgttctcagatttgctgctgttcgaacacttaataaggtttgttttatccataagactactttttgtactttcttgtcattgtacttctgtcatgtgtgtggagctttgattcaactgtagtttacaaatacaaagtagatggcttcccacaaatagttttctttctaccacaccagtgattggcaagcaatattatatccattttttacacattggtacttatctcgaattggcattaagtctgcatattttcccctattataaatgctaaaagtccaaaactgtcactgttttttatgaacaatgaaataacactggttagtttctgaccacaacattgcccttgattgcctagtttggagaaccagattctgctggctgttggccagaaataaactgtattagtgccttgtccagtctggtcacatgcatagaatgtgtgcatgtagaccgacatgaattggttaatttacactgaaccatcatctgggaccgatagggccaactgctcttggaagacacgaaaagtcgaaaactatctatagtggtgtgggggattgatctcaagacatagggacaacagcaagagggaactaactggaaaaaaaaacaattagatttaatcctagttatcctctatataacttgtgaattttattttatatattttgatgagcttgtgggtgggttgtgaactgatggtccaactggtaaaccactgattcaaaatgttcactggttttatcagtagtccgattttataactatgcttggatataatttgaatttgtcgagtatagtttagttggaagttgaaacttctgcctcttgcaaatttaatcaggaaaaattatattcattactatgttaattcttttgtttatgttcttttttatggagttcctcttttgattatattaaactgtatgcttatactatgtttgataggcttgttggttccttcacttgacttgtgttcatttgatattgattgtacaggttgcatcaactcatcctttggctgtcaccaattgtaacatagatatggagagtttaatatctgatcagaacaggagcattgctacccttgcaattacaacactacttaagacaggcaatgaatcaagtgttgatcgcttaatgaagcagatgaccaattttatgtcggacattgccgatgaattcaagattgttgtcgtagaggccataagatccttgtgcttgaagttccccctaaaatatcggtcactgtacgtagaatagcgtatattcttatacagaaatttttaaagatccagaactagcttgtcatcagaacattgaactttgttgtgtttgcaggatgaactttttgagtaatatcctacgggaagagggtggctttgagtacaagaaggctattgttgattcaattatcatactcattagagatattcctgatgcaaaagaaagtggtttatttcacttgtgtgaattcattgaagattgtgagttcacttatatgtctactcaggtaatggccaatctatcattttataaatgtgtattttgcaagtcactagttatttccgaacttaggaggttgtaacttaattgcgacaatgtcatgcttgcttctgaagaaattcaagaaatattctatatagccttgttatgttgaaagttatatataactgtccgaggatcttttctcccctatattacaccgaagtggtgatcattattcaccagcaaaatattttgatttagcaagtgcttaggattagcctatgcaaatattagttgttttgtacttgtggaaagtcctccaatcgttttgggatgtagaaacagtttccctgccttgcataccccaaagttacacaatgaattatgaatttctaatgaatttactatgttccaatcttgcaacagatacttcactttttgggaaatgaaggtccaaagacatcagatcctagtaaatacatacgttatatatataacagagtgatacttgaaaatgctactgttcgagctagtgctgtaagtactttggcaaagttcggtgcattggttgactcactcaaggtaatttggcagatttatacctgtaaacccctctgttgactctcttgaggcttgggttgcacttaccgccttcttttgttgcagcctcgaatttttgtccttctgagacgctgcctgtttgatggtgatgatgaggtgagcaaaaagataattatgctctgttcttcctcatgaacagcttagcattgtcagttctgttcttaaaagggcccatcaaactctccttcctggcaagaagcctttcttacatttgctatgcttttcacctcaggtgcgtgacagggccacgctttatctcaaattgcttggcggggaagctacagttggtgaaactgagaaggatgtgaatgaatttctctttggttcatttgatattccactagttaacctggagactagcctacaaaactatgtatgtctttcaacaacattaatgttctatgatttttagattatcatgttggtgcctttacattcttgtcgtatgttgcaggaaccatcagaggcaccttttgatatttcatctgtatctttggaaactaaatcacaacctcttgctgagaaaaagactacgggcaaaaagccaacaggcccagcatctgctctcagcggtccagttcctactgttgatgcctcatatgagaagcttctttcatccattcctgagtttgctggttttggaaaactctttaaggttagcttggtgttcttttattttgttcccactgaaaatatatcactatgttctaccacttatgttttgactttttatcctttttttcagtcatcagctcctgtagaattgaccgaagctgaaactgaatattcagtcaatgttgtgaagcacatttatgacgggcatgttgtgctccaatacaattgtaccaatactatacctgaacagctgcttgaagaggtaaacgattttttccactcagtatttttatttatggattagtgcttttctgaacaatgtttttatttcaggtggtggtttttgtggatgcttctgaggccgatgaattttcagaagttgcaacgaaatcattaagatccttaccttatgattcaccaggacaaacctttgtggcttttgaaaagctagaaggtgtccttgctactgggaagttctcaaatatactgaaatttattgttaaagaggtatgtgctcccagtattgttctttttctgttttcacatatggtctgaatcaatcgattttccttcacatttaattctgaggatgtcctggaccttggtcgaatcgaaaacattctccttattcctttcacatagagtttgtgatttatcccttgatgttttacttgggatcttaatattttttattccttgaggagattattatgcatctacatgttcagttgatgcagtagacggtttgactggttttatttaactggaactgtgtttcaggttgatccatccacaggtgaagctgatgatgatggcgttgaggatgagtaccagcttgaagatctggaaattacttctgctgattatatgttgaaggttggagtttctaacttcagaaatgcttgggaaagcatggatccagaaagcgagcgggttgatgagtatgggcttggcgccagggaaagcctggctgaggctgtgagtgctgtcataggcatccttggcatgcagccctgcgaggtcagtcactttctaatttatctattgaatgaatacgaagtcctgccagtttgtaaccttttataccatgatagttttttttttttctgaagttaattttaataatgtgatgctagttcttatctaatcggcaaccatatgaaatagagttagcatattgagcattgcttcatgaaacgataatctcacctaaccattttctcgcctttggtttttagggaactgatgtggtcccaagcaattcgaggtcacacacttgcctgctatctggtgtgtttatcggcaatgtgaaagttttagtgaggctgtcattcggacttagcggaccgaaggaagtggccatgaagctagcagtcagatcagatgatcctgagatcagtgacaagatccatgaaatcgttgcaaatggctaaatctgatgaagagggtcaccccttttttgacctttttgtttttggctttcacgccatggaaagctcaacggaatttgattaattctatgatgatagtacatgtaagcttggttttccgttggatacatgtgttgttgcactcgcaccccatcatttgaaaacaaggcatataacaatttttgattgatttggaaccacatcatcaattcctttatatatcaaggatttgactagtacatgcaataatatatagatgaagttatatcaatcagattgagagctactttgcggttc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0201100, RefSeq:Os07g0201100