Os07g0204900

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Revision as of 08:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0204900| Description = Similar to Zeta-carotene desaturase (Fragment)| Version = NM_001065680.1 GI:115471092 GeneID:4342680| Length = 5500 ...")
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Gene Name

Os07g0204900

Description

Similar to Zeta-carotene desaturase (Fragment)

Version

NM_001065680.1 GI:115471092 GeneID:4342680

Length

5500 bp

Definition

Oryza sativa Japonica Group Os07g0204900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:5677782..5683281

Sequence Coding Region

5677933..5678098,5678436..5678560,5678666..5678800,5679128..5679200,5679581..5679654
,5680292..5680396,5680637..5680881,5680965..5681052,5681202..5681244
,5681319..5681475,5681648..5681776,5682012..5682084,5682281..5682445
,5682651..5682809

Expression

GEO Profiles:Os07g0204900

Genome Context

<gbrowseImage1> name=NC_008400:5677782..5683281 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:5677782..5683281 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccatggctgccacgtcccgcgcgccgtccacgctggccccggcgtcgttctccgccgccggcggcagcaggaggcggcgccggtgcccgaatcccagggtgcgggtgggggtgggggtgcggtgctcgctcgacagcaacgtctccgacatggccgtcaacgctccgaaaggattgttcccgccggagccggagcactacagggggccgaagctgaaggtggccatcataggggccggcctcgccggcatgtccaccgcggtggagctcttggaccagggccatgaggttgatctgtacgagtcccggccgtttatcggcggcaaagtcggttcttttgtggataggaaagggaaccatatcgagatggggctgcacgtgttcttcgggtgttacagcaatcttttccgccttatgaagaaggttggagctgataataatctgctagtgaaggagcatacccatacatttgtaaataaaggaggcacgattggtgaacttgattttcggtttcctgtgggagctccgttacatggtatccaagcattcctacgaactaaccaactcaaggtttatgataaagcaagaaatgccgttgctcttgctctaagcccagttgttcgagctcttgttgatccagatggtgcattgcagcaagtacgggatttggatgatgtaagtttcagcgattggttcttgtcgaaaggtggtactcgagagagcatcacaaggatgtgggatcctgttgcctatgctcttggtttcattgactgtgataatatcagtgcacgttgcatgcttaccattttcactctgtttgccacaaaaacagaggcatctttattacgcatgctaaagggttcacctgatgtttatctgagtggtccaataaagaagtacataacagacaggggtggtaggtttcacctgaggtggggatgtagggaggttctctatgataagtcacctgatggggaaacctatgttaaaggccttctcctatccaaggctacaagtagagagataatcaaagcagatgcatatgtcgcagcttgtgatgtcccggggatcaaaagacttttaccttctgaatggaggcaatgggatacatttgacaacatctacaagttagatggtgttcctgtagtcacagtacagcttcgttataatggatgggttacagaacttcaagatttggagaaatcaagacaactgaaaaaggcagttggcttggataatcttctctacactccagatgcagatttttcatgtttttcagaccttgcactttcatctcctgctgactactacattgaaggacaaggttccttgatccaagctgtgctaacccctggcgatccttacatgccattgccgaatgaggagataattagcaaggttcaaaagcaggtcttagaattgttcccgtcatcacaaggcttggaacttacatggtcgagtgtggtgaaaatcggtcaatcattgtaccgcgagtcaccaggaaatgatccatttagacctgatcaaaagacaccagttaaaaacttcttcctgtctggctcttacacaaaacaggactacattgacagcatggaaggggcaactctctcaggcaggagaaccgcggcctacatctgtggtgcaggagaggagctgctcgccctccgaaagaagctcattgtcgacgacagcgagaaggccaggggtaaggtcgaggcccttcagacaagctga</cdnaseq>

Protein Sequence

<aaseq>MAMAATSRAPSTLAPASFSAAGGSRRRRRCPNPRVRVGVGVRCS LDSNVSDMAVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDLYE SRPFIGGKVGSFVDRKGNHIEMGLHVFFGCYSNLFRLMKKVGADNNLLVKEHTHTFVN KGGTIGELDFRFPVGAPLHGIQAFLRTNQLKVYDKARNAVALALSPVVRALVDPDGAL QQVRDLDDVSFSDWFLSKGGTRESITRMWDPVAYALGFIDCDNISARCMLTIFTLFAT KTEASLLRMLKGSPDVYLSGPIKKYITDRGGRFHLRWGCREVLYDKSPDGETYVKGLL LSKATSREIIKADAYVAACDVPGIKRLLPSEWRQWDTFDNIYKLDGVPVVTVQLRYNG WVTELQDLEKSRQLKKAVGLDNLLYTPDADFSCFSDLALSSPADYYIEGQGSLIQAVL TPGDPYMPLPNEEIISKVQKQVLELFPSSQGLELTWSSVVKIGQSLYRESPGNDPFRP DQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRRTAAYICGAGEELLALRKKLIVDDSE KARGKVEALQTS</aaseq>

Gene Sequence

<dnaseqindica>152..317#655..779#885..1019#1347..1419#1800..1873#2511..2615#2856..3100#3184..3271#3421..3463#3538..3694#3867..3995#4231..4303#4500..4664#4870..5028#acggaggccgacaaatccgctgctcgacggcatcttcgcctcctcccccacccgcatcctcttccacctctcgcgctcacgccatttatactctcctcctcctcctcctcctctactcctagcagcagcgttggttggtgagctgaggcatatggccatggctgccacgtcccgcgcgccgtccacgctggccccggcgtcgttctccgccgccggcggcagcaggaggcggcgccggtgcccgaatcccagggtgcgggtgggggtgggggtgcggtgctcgctcgacagcaacgtctccgacatggccgtcaacggtgagggtttcttgggtttcgttttctccggtcgattctttcttctgcggtgccactccgctctccccctagagattcttgaacggttttggtatatggatagaaccaaggagacacaaattcttgaaccctggattttggtggctctgaactgaactgaatttgtggattagttagttagttagttgttgcttgtgatgagtctgaccatgtgtagtagctagattcttcttttctaggttcattcagtagctttctacaggattacctgaatatgctgctgactgtgaaaggctgaaagcaattgaattggggatcttttttccgtgtgtggcagctccgaaaggattgttcccgccggagccggagcactacagggggccgaagctgaaggtggccatcataggggccggcctcgccggcatgtccaccgcggtggagctcttggaccagggccatgaggtttcttcaattcattgcctgcaatgatgtccgtgttctgctcttccagggaaaagacagtgatttttggtttaccaaaattggggtgatgttcctcttttgcaggttgatctgtacgagtcccggccgtttatcggcggcaaagtcggttcttttgtggataggaaagggaaccatatcgagatggggctgcacgtgttcttcgggtgttacagcaatcttttccgccttatgaagaaggtaattttctatgttctttcagatggttggagaatgtctacttttcaagtattttgttaatctagactgcactaagtagataatggagctgagttagatgcttcttccatcatgaaaagttaggaatgccatctgtttgcacttactagagtatggtaaatctgtactcccggagtatattgtgaggagaacatgctatctttatttttgtctatatgaagcatgtagtcaattactttatttcatgagtcggataatttgtactttttctgtattagccaggtttgacactaactgttaatcgagttcaaccttattttgtttcaggttggagctgataataatctgctagtgaaggagcatacccatacatttgtaaataaaggaggcacgattggtggtatgttcagttatcctatacccatgtgcctaacagttgtaggagttgtggtgtttttttacttgtcgtgctgaaatcattcttcattacttttgagctacctttcatagaaagttaaaccgttgctaatatttaaagtttacaaagtgtaaattactatgagacgatttgctagaacactaattgttcttttgtgggcggcaaaaaaaaagtgctctggcgtgttattttcttgatcttgcattaggccaatactgataagacaacttgccatatttctactaagtgtgctaaactaactcaagtgtattttgctatgtatttatattccacttattttctaaactttcatactatttgctttgctaattgctatacagaacttgattttcggtttcctgtgggagctccgttacatggtatccaagcattcctacgaactaaccaactcaaggtaattactctaaattcatgtccggtaactaggatatcaaactttgactatctttattgaccatgtttaatcacaatattttgactttccaacttattgtaatattcttgctttgaactctgtcaaagtcatgcccacgcttctaacagtatcctcatttttatactctgtattcataccttttagtcacacgccattactttttgaatatagtgcttggcgctttggggcacaatgtaatcagctgagttgagtgtaaatattccttgaaagctcctaaaagtgattggtctgtttaatattccttgcagactgtgataatctactaaagatgtggctttctgtgatatttgtattgtcatgaatcaaagcattgtaatgtcttcctacctgtctatatatgcaaattgcatagctagttcttgattgccatgtcaccagatagaatgtgatatggattcttctaaatcttgttataattcataattgaaagattctataagggtgataagcatatttgttaaggattctataaggattcataaaccttcaactttgcccatctattttatacagtacatatttgttagatggattcaatatatggactaattaaaatatttgaatcatgtttcaggtttatgataaagcaagaaatgccgttgctcttgctctaagcccagttgttcgagctcttgttgatccagatggtgcattgcagcaagtacgggatttggatgatgtatgtatctctctcctcttatttaagtgtcattaggagtgtatatctactgtctaggcaatgcatcattatatctcgaatctggaacataggttactagtgcacttccttctgtttcattctcatcacaattagttatataaacatatgcactataaatatcgtagaactgttattaatgaaaaatcagaggtagatagcttctatctaaaggttaatttgcaagtgtacttttttcaggtaagtttcagcgattggttcttgtcgaaaggtggtactcgagagagcatcacaaggatgtgggatcctgttgcctatgctcttggtttcattgactgtgataatatcagtgcacgttgcatgcttaccattttcactctgtttgccacaaaaacagaggcatctttattacgcatgctaaagggttcacctgatgtttatctgagtggtccaataaagaagtacataacagacaggggtggtaggtatgatggcaaagaccgaaatttgttttgcattagtatgtactgcaccgttgaaagcttacatcatttaacaaatccttcaggtttcacctgaggtggggatgtagggaggttctctatgataagtcacctgatggggaaacctatgttaaaggccttctcctatccaaggttagcaccattatctatgaagtgtggttatcctttgcatgactgtacagctagattatggttgataataatgtgcattgctgtaggcttagcttaacccttttcttgatactttaattgacacttttgccatgcctggacatttttaggctacaagtagagagataatcaaagcagatgcatatgtcgcaggttctttctcttccattttgtctttgactaccacgtcctaccatgcaagattaaattggaattgttgattgtagcttgtgatgtcccggggatcaaaagacttttaccttctgaatggaggcaatgggatacatttgacaacatctacaagttagatggtgttcctgtagtcacagtacagcttcgttataatggatgggttacagaacttcaagatttggagaaatcaaggtaactccagtctcccctccccagttagcccaatatttttatcaatgcccgtgatgcacacattatattttttcataaagagtgcatttgtttgtactgaacaatggccgtacaaatgcagtctgcttttttgcatgatgctgaatgatacctctgtttatctttgatgtagacaactgaaaaaggcagttggcttggataatcttctctacactccagatgcagatttttcatgtttttcagaccttgcactttcatctcctgctgactactacattgaaggacaaggttccttgatccagtaaggctactttctcttccatgttctttgcttttgtggtctggaattaagtttgaccattcagtgttcttgacatttgatatcattcactattgtagctgttagtttgtaattatggtttatttttacacaagcagcttacttggtgactagtgtagtagaactgttgaatttcatgcatcaaattgataactgttgcaattaaaatcaccgtgtgctactacttcatttgtagagctgtgctaacccctggcgatccttacatgccattgccgaatgaggagataattagcaaggttcaaaagcaggtgggtttgtaaataccactctgttgatcaaattattcttgtattccattaccaaaattctagaactggttgttagagatccattgcaaataatgaagcgtgttaattttaaatcaggataatttcttctgcttttgttaattatttcattctttcaaaactcacttcagtgcaaatccatttatgattcatgcaggtcttagaattgttcccgtcatcacaaggcttggaacttacatggtcgagtgtggtgaaaatcggtcaatcattgtaccgcgagtcaccaggaaatgatccatttagacctgatcaaaagacaccagttaaaaacttcttcctgtctggctcttacacaaaacaggtatctaaaccattgacttagtcactgtcaccagtaatcaatcagcgctcatcaaatacaattgttttgattctgtaaatttagattttaagcaggaaggttcgtttggtagatattcgtaatattggatgaaacatatataactgctcctgtaaaagcatgatcgacgatcccatgaactcataatctgctatcttgtttgcaggactacattgacagcatggaaggggcaactctctcaggcaggagaaccgcggcctacatctgtggtgcaggagaggagctgctcgccctccgaaagaagctcattgtcgacgacagcgagaaggccaggggtaaggtcgaggcccttcagacaagctgagcttcctcaaatgacacatgctggagtgagtggattgctatgcccaaaacaaaaacagcttcctgggtgtagtaggcgatttccgcagcgactctcatgtaaatcctacttgattgagcatttaggtccaatctgctgctgccctttttgccttgacacgatcgttcgttcgcccgtcaatggtgtgttcttcgttattgtgaatttgtgattgggaaccaaaggtggcatacgggattacatcaggcagcgtgtgttttgttcagcttaaccgatcattgaacccattgatgatgatgatgatgtttatatagtgcacacatcacttaaaatcttgtgagagatggtgcttaaatttggtgagtactgctgtactttataaggcagctttagagtttttataaggagtatattttgaacattgtgagatgagaaattttagatacttaaaagtacgagttacttaaatttt</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0204900, RefSeq:Os07g0204900