Os07g0245200

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Revision as of 08:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0245200| Description = Similar to Polygalacturonase-like protein| Version = NM_001065817.1 GI:115471366 GeneID:4342825| Length = 3678 bp| ...")
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Gene Name

Os07g0245200

Description

Similar to Polygalacturonase-like protein

Version

NM_001065817.1 GI:115471366 GeneID:4342825

Length

3678 bp

Definition

Oryza sativa Japonica Group Os07g0245200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:8111132..8114809

Sequence Coding Region

8111340..8112067,8112496..8112566,8112663..8112837,8112934..8113054,8113351..8113466
,8113563..8113671,8114413..8114433

Expression

GEO Profiles:Os07g0245200

Genome Context

<gbrowseImage1> name=NC_008400:8111132..8114809 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:8111132..8114809 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgagccgatccgcatctgcacttcaagtccttttggtttttgcaactgtttttgctgcgactcaatgggccacttcatctgccatgtactgcaacgacttgacagcaagcgtgcatcggccacacaataagggtggggcagagctctttgtgcctgctggaaggtggttgactgggagttttaatcttatcagtcatctcactgtgtcacttgacgccgatgcagtaataatcggatctcaagattcatctgactggccagttattgatcctctgccatcttatgggcgtggcagagaactccctggtaaaagacaccagagtcttatttttggatccaatcttactgatgtaataataactggtgctaatggcaccattgatggccaaggtgaactttggtggaactggtttcacaatcacacactaaattataccaggccccctcttcttgaactgatgtactctgacagggttgttatttccaatttaaccttcatgaatgcaccattttggaatattcatcctgtatactgcagccaagttcttgtccagcatctgacgatcctagcacctatcagttcaccaaacactgatggcattgatccagactcatcctcaaatgtgtgcatcgaagattgctacatcagaaacggcgatgacattgtcgtcatcaagagcggttgggacgagtatggtatctcttttgcccatcctagctccaacattagcatccgcaacatcactggacagacaaggaacagcgcaggaatagcctttggaagcgagatgtcaggtggtatatcagacgttcgagctgagggccttcgtttcatcaactcggtgcatggaatcagaatcaagactgccccagggcgcggtgggtatgtgaaaaacatatacatagctgatgtgagcatggacaatgtctcaatagccatcaggatcactggaaactatggggaacatcctgacgacaactatgacaagaatgcgcttccagtcattagcaacataacgataaaaaatgtggtgggggtaaacattggtactgcaggaatgttgctgggcatccagggggatatctttagcaacatttgcttatcaaatgtgtccctcagtagcaaatctgctgatccttggaattgttcgctcatcgaagggttctcaaattctgtagctcctgagatatgtgagcaacttaggcccagccctgggccaggccaagtatgctatgatggtaatagctacccagtgccagcagcacagcagccatataagtcgggcgctacccggttacaaaatcctttcctcaagttcatttctctatacagttag</cdnaseq>

Protein Sequence

<aaseq>MMSRSASALQVLLVFATVFAATQWATSSAMYCNDLTASVHRPHN KGGAELFVPAGRWLTGSFNLISHLTVSLDADAVIIGSQDSSDWPVIDPLPSYGRGREL PGKRHQSLIFGSNLTDVIITGANGTIDGQGELWWNWFHNHTLNYTRPPLLELMYSDRV VISNLTFMNAPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSSNVCIEDCYIR NGDDIVVIKSGWDEYGISFAHPSSNISIRNITGQTRNSAGIAFGSEMSGGISDVRAEG LRFINSVHGIRIKTAPGRGGYVKNIYIADVSMDNVSIAIRITGNYGEHPDDNYDKNAL PVISNITIKNVVGVNIGTAGMLLGIQGDIFSNICLSNVSLSSKSADPWNCSLIEGFSN SVAPEICEQLRPSPGPGQVCYDGNSYPVPAAQQPYKSGATRLQNPFLKFISLYS</aaseq>

Gene Sequence

<dnaseqindica>2743..3470#2244..2314#1973..2147#1756..1876#1344..1459#1139..1247#377..397#tccagtcctactcttctctttgctgccgcttggagccggagaaggtgatggggagtgagtgtgttgagtgaagccatcggcatagccgtcgccgtcgacgccgctgcgttcgcggcccgagaaggcgagcccggagaagtagagagtatggcttcttgtttgcgttttttttttttgttttgttttgtgtgctgtgttcttgttggttggtcgctcctcgttcttgatttccgtccatggtgaccctggttagtggtggtggcggctggttgcaggtcgtcgatcttggctgttgttctggtgtggtgcctgctggtgagtcgatttgagggaggaagaactgacttgacagtttcttcactcgctgctagagaaaatgatgagccgatccgcatctgtaagtggacgatttcttgttttgggtcccgtttcggttgctctgattgattaccttgtagtagcatgtcctgccttggccaagaactctaatgtggtggtagaattgagctatagatttggataggaatcaactgatccaagaattatttgggtagaatttggcagttcgcttagaattcagttcttttaagatcgggcactgtgatggacagcctaatgggtgcatcacgggataagtgcactgctgctgtctttgtctttttttgatggagacatctgtcttcttgcatggggattcaagtgggacttttataattcccatttggccacttttcttttgggaaaattctccgaggatgatgtgtgagacctttgctcctagtggaggagctccatgctttgcttttacctgtgattccttcccctataccatggattccgacattgcagaaggcggcgtggccttgttagaacttagaagtcagcattggcaacactacggaaatcaaagtcagttgatgctgacattttatccaacccattgtaaggacaaagactgatggataacttgaattaatctttgtggcaaactaaacaagttcacccccccccccccaaatagtgtttactctgtgtttgaactatgtttcatttgctttgtatttccttaaaaatgcactattcagattcagctcatgaacaacattttttgacgttcatcttctggaatttgttgtaggcacttcaagtccttttggtttttgcaactgtttttgctgcgactcaatgggccacttcatctgccatgtactgcaacgacttgacagcaagcgtgcatcggccacacagtgtgtcaattactgagtttggtgctgttaatgatggtgttactcttaacacgaaagcgtttaagaatgcaatcttttacctcagctcatttgcagataagggtggggcagagctctttgtgcctgctggaaggtggttgactgggagttttaatcttatcagtcatctcactgtgtcacttgacgccgatgcagtaataatcggatctcaagtaagataactttatgcattatttgattcatttcacagaagtgatttatttattattgtcttatgaaatttaacaaaactagtgcattcaactttatactgctttacataaatcgcattctaacaaaattgcagaataacgtgaaatgttttatatttcataacattctttcctgaaaacaaattattggaacttacagtaactgtttctcatgttccaacatgaaaatactttacactagaacaaacagtgcaagaagtattacaatcgcgatcgtcataagaattcttttgcaggattcatctgactggccagttattgatcctctgccatcttatgggcgtggcagagaactccctggtaaaagacaccagagtcttatttttggatccaatcttactgatgtaataataactggttagtaagtatcatatttatatcatgtgtgctcttgtatttattagcctacttgtaaattgtaatgatgcatttcatattgctgtgctcttgcaggtgctaatggcaccattgatggccaaggtgaactttggtggaactggtttcacaatcacacactaaattataccaggccccctcttcttgaactgatgtactctgacagggttgttatttccaatttaaccttcatgaatgcaccattttggaatattcatcctgtatactgcaggttggtttgtctacatctctgcttcattattaacagtgccagctgttgtggttgcacctatttcttatcttgattattttttttcaaaataatcagccaagttcttgtccagcatctgacgatcctagcacctatcagttcaccaaacactgatggcattgatccaggtgtgcttgctttatttgagttaatatgaccaaaattctgaatgtttctataatatttttcatgtaatttcaattaacttgcagttaaccatgattcaatatagttactgtccgatacaatgtacagaacttctcattaccttagtaaacacaaactaactgtggacagatatacgatggaataacagttcaaagcatggagcataccagttcatcttcctgagatatttgcctcaaatgtagcttcgattcagttttttcgaatgtaccatgcacccctagataaagcgaccactttaatgcataatttttagagtagtccttgctctgatacctggtttccccttttttttccccttgttttgtatgtttgcattcatttagcagatttcaatagctgatgctaatgcaacttcaatgccatccagactcatcctcaaatgtgtgcatcgaagattgctacatcagaaacggcgatgacattgtcgtcatcaagagcggttgggacgagtatggtatctcttttgcccatcctagctccaacattagcatccgcaacatcactggacagacaaggaacagcgcaggaatagcctttggaagcgagatgtcaggtggtatatcagacgttcgagctgagggccttcgtttcatcaactcggtgcatggaatcagaatcaagactgccccagggcgcggtgggtatgtgaaaaacatatacatagctgatgtgagcatggacaatgtctcaatagccatcaggatcactggaaactatggggaacatcctgacgacaactatgacaagaatgcgcttccagtcattagcaacataacgataaaaaatgtggtgggggtaaacattggtactgcaggaatgttgctgggcatccagggggatatctttagcaacatttgcttatcaaatgtgtccctcagtagcaaatctgctgatccttggaattgttcgctcatcgaagggttctcaaattctgtagctcctgagatatgtgagcaacttaggcccagccctgggccaggccaagtatgctatgatggtaatagctacccagtgccagcagcacagcagccatataagtcgggcgctacccggttacaaaatcctttcctcaagttcatttctctatacagttagacgccccaatcatcaactatgtccttgtagatttttatttttggtgcaagtgattgttgaagacttccaattttgccttaaggcttgccttgtgtagtcgtgtgtatagagctttgtggagataactgttggtgtgatgttattatttcaatgtcctgtattgtttggattcttactctaaataaaagcaacccatgtttataacttc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0245200, RefSeq:Os07g0245200