Os07g0265600

From RiceWiki
Revision as of 08:30, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0265600| Description = Stem cell self-renewal protein Piwi domain containing protein| Version = NM_001065870.1 GI:115471472 GeneID:4342886| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os07g0265600

Description

Stem cell self-renewal protein Piwi domain containing protein

Version

NM_001065870.1 GI:115471472 GeneID:4342886

Length

7558 bp

Definition

Oryza sativa Japonica Group Os07g0265600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:9492708..9500265

Sequence Coding Region

9493001..9493176,9493269..9493300,9493405..9493499,9493623..9493696,9493787..9493898
,9493976..9494039,9498048..9498113,9498283..9498413,9499722..9499859
,9499964..9500079,9500166..9500253

Expression

GEO Profiles:Os07g0265600

Genome Context

<gbrowseImage1> name=NC_008400:9492708..9500265 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:9492708..9500265 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtttgaaaaagtgaaagcaaaccttcctggtcctcctgaatttttgctgtgtgttttaccagaaaggaaaaattgtgatctctatgggccatggaagaagaaaaaccttcatgagatgggtattattactcaatgcattgttcctagtgttaagatgaatgatcagtactataccaatgttcttctgaaaatcaatgctaagcttggtggaatgaactccaagctttcattggagcatcgacatatgattcccattgtcaatcaaacacccacattaattttgggaatggatgtttcacatggttcgccaggtcgagctgatgtaccatcaattgctgcggttgttgggtccagatgttggccgctgatatcacgctacagagcatctgtccggacccagtctccaaaggtagagatgattgattctctttttaagccactggacgatggaaaagatgatggcataataagggaacttctactggacttctacaagaccagtcaacaaagaaagccgaagcagataatcattttcagggatggtgtgagcgagtctcaatttagccaagtactgaatgttgagcttaatcaaattataaaggcatatcaatatatggatcaggggccaattcctaagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttccaagaaaatactccagacaacgttcctccagggactgttgtagattctggtattgttcatccaagacagtatgatttctacatgtatgctcatgctggacctataggtacctcaaggcccacccattaccatgtcttgctcgatgagattggtttcttgcccgatgacgtgcagaaactagttttgtcgctttcttatgtgtatcagaggagcaccactgcaatatctgttgtggcacctatctgttatgctcatctcgcagcagcgcagatgggccagttcatgaaattcgaggaattcgctgagacttcgtctggaagtggtggtgtcccttcgtcatcaggagcagtggtcccagagttgccgcgcctgcatgctgatgtctgcagttcgatgttcttttgttga</cdnaseq>

Protein Sequence

<aaseq>MFEKVKANLPGPPEFLLCVLPERKNCDLYGPWKKKNLHEMGIIT QCIVPSVKMNDQYYTNVLLKINAKLGGMNSKLSLEHRHMIPIVNQTPTLILGMDVSHG SPGRADVPSIAAVVGSRCWPLISRYRASVRTQSPKVEMIDSLFKPLDDGKDDGIIREL LLDFYKTSQQRKPKQIIIFRDGVSESQFSQVLNVELNQIIKAYQYMDQGPIPKFTVII AQKNHHTKLFQENTPDNVPPGTVVDSGIVHPRQYDFYMYAHAGPIGTSRPTHYHVLLD EIGFLPDDVQKLVLSLSYVYQRSTTAISVVAPICYAHLAAAQMGQFMKFEEFAETSSG SGGVPSSSGAVVPELPRLHADVCSSMFFC</aaseq>

Gene Sequence

<dnaseqindica>7090..7265#6966..6997#6767..6861#6570..6643#6368..6479#6227..6290#2153..2218#1853..1983#407..544#187..302#13..100#agggttgaaagcatgtttgaaaaagtgaaagcaaaccttcctggtcctcctgaatttttgctgtgtgttttaccagaaaggaaaaattgtgatctctatggtaatagcctaataggttacacattacttatttctgccctcatgaattcttcaatattcgtaccatctcatcaatctgttttgtagggccatggaagaagaaaaaccttcatgagatgggtattattactcaatgcattgttcctagtgttaagatgaatgatcagtactataccaatgttcttctgaaaatcaatgctaaggtacaggcacttcatctctatttgattgtgccttaaactttgatccaacaatcttgttcacatgaattactttcttatctaaaatttttattcctgtttattagcttggtggaatgaactccaagctttcattggagcatcgacatatgattcccattgtcaatcaaacacccacattaattttgggaatggatgtttcacatggttcgccaggtcgagctgatgtaccatcaattgctgcggtatgtcttattccctctgcattattttgcatgcaccaaatatctgtgttgtgtttccatccttgagtggtcctacattcagttgcctagtatagatgcagggctgtactagaaaattaggaggcatatgtgccaaaattgtcatgtgctaaaattttgagctattgcatggtaactacagcttaattatgccacagaatccagtgaacattctccaattaaagccaatagttacaattcataattcatgaggacaccaggaaaaaaaattatgttacaaacaggacctttgtttgtaagaaaacatcaaatatagtctgaaaaaatgctgctattacacaagatgcatcactgttgagtataatgaaaccatgaaatgccttaggagttttaaaaaaataagatgatatttgagatcaatgtaaaattactgatgctcgacatagaactcctgccaagttaatctgatcttagttcacaagttatagtaactgagaaacacttcataactatacttcaaatcctccataatatagaactagaggtggatgttccattgatacttttcctgcatgttgtgtgggtaagtggaatgataaaatggtaaacatgatgtgaaaggtggatggtaacttcgtagctagaaagtttgattttgtgtgatctgtacaaatttgcatcttacatcattcatccaaacagtgaaaataattgagatgatgtttccttccttagggtagttggggatttgtcccatcacctactgtctttttattcagttaaagaacttgttgcctgtgtgccatatggtttaggccggggatgtaatacatttccataattccattatctaagtacatacaagaagaaaaatgatttgcaccttagatcaatcatccaaatgctaaaagttattgagaagatgccgctttttcattgacatgaggcaacacttcatctgtcccaaaatataagcatttttagcattgtaacaagtcaaatatttttaactttgactattaatagcaaaaaaaattaaaaggatcaatcatgtaaaattgatgttactagatttttattaaacaaactatcataatatgcaactctttttatttaaaacatctcacttttatagatattgttggtcaaaatagcatctcggagactatgtcagagtccaaaaatgattatattttgggactgaggaagtaggatatggggccctcaatcttgttagggccctttgtggcagcagagcttgcacatcgctcattcagctagtggtgatgacatcatattttgctacaggttgttgggtccagatgttggccgctgatatcacgctacagagcatctgtccggacccagtctccaaaggtagagatgattgattctctttttaagccactggacgatggaaaagatgatggcataataaggtgctctaaactaatcgtcctactctgtattgtttctgcttaataccttatgttattttaggcgtactgttgtaaaaagttattcactcaggaagtagtctactagtctgagcctaagatgcctatttacaaaaatgttctttttttctactgtaactttgctttgcagggaacttctactggacttctacaagaccagtcaacaaagaaagccgaagcagataatcattttcaggtctttatcagtttattgttatctacttattactttcagttttgcatatgttggatattcgtggcacgcttttcaaattgctaaacggtgcatttcatgtgaaaactttctatatggaagtttctctaaaataccagataaatatatttttcaagtttgtaataattaaaactcaattaatcatacgttaatacctcctcgttttacggaaaacacttaatcttcatctacatgagtttcaaacaccacaaatctgatctatgatctatatgcacttcaaatttttttatcacacacttgatgcttatgttgatgcctttaaggaccgtttaattctcaaagaattttccttggatggatttttcattctacaaaagaaaatgttggcagttgaaagttagtttctataagcaaatttactttgctagtttgtgaaaagaaagagtgatggctaaagggagatgcatgctcaacaaggctttttgccaattctagattatacaatatatcaagatgatgggtcgaaccagcatttatcacagatttttattccacccttacatagtttattatggaaattgtacgttgtcaacgattgaaggaaatgctcatcatagctgttaacaatcagctagttaatgttatatggtatgtgttgttatagccacgtttacttgtttaatattgtcactctaaatcttctgtaaactcttaagatatattttatcaagtactcccttcgtcccaaaatataacttttaacaatgcaaaatttatcccaaaatataacatctaacattcaaaatttatctcaaatataacaacttcacttacattctcttatcaaccaatcacaaccttccacgattcaaattctccacctatttactcttaaccaaccacaactttcccccattatacccatgtacaaccctaaaactccttatattttgggacagagatagtaagttttttccatagctgcatttgttcaaagacaaatttcctgtttttgttattgataacaggaggggctggtccaaatattttgtaggtcttatagcaaatagtacattagtctttttgtctttaatgcataatggatatagagagcttttcatttgaatactggtttctgtacattccaacgttgtgtcattacacatatttaaatatgaattatataatttgcatatgtttgcaaaactacaatctgcatatgttggggaaatatccattgaaaaccatacctaaatgttctctatattcatgaaaaaattactagacataggtatagggatgaaatacattcacaccaaatctcaagtctaaactccggtattttttttcatgaatttatgtcgaacttttaggtccggttttcacgagttttcacttgatggttttcaccagatatgccatgcatatgtttgcaaaactataaacgtaattttaatgttaattggggtacacaatatggtgggcaaagtgttcttagaaagaactgaaaaaataaactatgcatgacatgttttaaatagggaaaatttgctctaggaaattacagttgatgtatttgctgaaacgtgctgcaaatacatcattggccttttctgcagaaatggctatcacaatgttgtagccatttctgctgtacttcattggcctttgctccaattgagcatgacaacaaaaaaaaggaaaaagtacatgtgaggtccctcatcttatcaccgaattacaaaattgtccctcaaccgaaaaaccagatatatgatatcccttatcttacaaaaccaggtcagtttatgtcctttggcggtattgactccggttttatcctatgtagtaactgagtcagcatgggcccacatgggcccaaacatgtcagggacacctccgtttcttctcctttgcccctctcccctctcttcccgatctctttccattgtgcgagacctccggagaaagcggcatgtgcggcagccggcggagaaagtggcgtgggtagcagagaaagcggcgccggcggagaggagttgggcgacagcggcgagaagctcctccacctcccaccgcagccaggatccctcctccacgccttcctcctctgcaagcgatggcgcggccacggcttcctccgtcgcttcctcgactgccgcgtgcggtgcgcagtcgcggctgccctacgcagcaccagcggactccgcccgagctcctccaacgtcgtggcctccgcatgcgccacggtggcccgcaaggccatggccacccagcatgcatgcaaagaagttcagtagcctgcctgatgctgcagctactatgaaaggggggtgatttcgcatgcgtacccaaacgagctatcttagcttactcactagaggtgctcaactcaactaatcagcaactagttcaaatcgatctactactgatccgtcagtgatcagtcgtcgtcaacatctattgatgcaaagcagctggctatctatcaatctggaatgcagagattaattgaattcaaccatccgtccatgaatgatcggttctcgtcgtcatcagtgggtaccgattaattgggctcttgctccgaatgggtgatgcactaggtctgcacggagagcagcgcgtgcggcagccggcggagagagcggcgtgggcggccgccggcacggagcaaccggcgcgggcagcgaataaagtgatgccggcgaagaggagttgggcggcagcggcgagaagctcctttgcctctacgtgtggtggtcagcggagaaattggcgggggcgacgagaagctcctttgcctctacgtgtggcgtgcggcagccagcggagagagcggcgcgggcggccgccggcatggagcaagcggcgcgggcagcgaagaaagtggtgccggcgaagaggagttgggcggcagcggcgagaagctcctttgcctctacgtgtggcggtcggcggagaaattggcaggggcgatggccgacacggagaaagtggcatgcagctgcggcgtgagtggagcgggcacgccgctgccgttgctatcgtccacgacctgaaccctgcgggtaccaggaggaagagcgggtggaggtgccggggtagttggttggcctcgcgctcctcgctgatgctcatcgccgccaacacctggcctttgtcgcccgccgggggaaggcagcgtatgatgggtatggaggtggccgcggactcatgggagaggacggggtcactgagcaagtgggagctggaggagcggagtgagacgtggagcttgtcggccgccggccgccccgtcgtctgtgtccgtggtgtcggggagtgcggcgctgctgccactcctcgtcaagattgacgggagtgagggggattggcgcgtggcgccacttcggcctggagctggggtgctgacatgttgggcccatgtgggtcccatgctgactcagctatcacgtcggatgaaactggagtcaaccagaatcaatattgcctaaggacttaaagtgatccggttttataagttgagggacgttatatatctgtttttttctttgtttggggatgattttgtgattcggtgaaaatatgagcgacctcagatgcattttttccacaaaaaaaatcgcttcatgatagacaaaaaaatatatgggccagataaccaatgcaagcaaaaagcaggagtccaacagcactttaaaagagtccatgaggaatttggaaataacaaactcctgttggcctattctggtatgttgtcatatttttccaatacctgttaatacttagtaattttatgaacgtttggacccagacagcttgaaccttactgctttcaagattctgtacatcagtttgtaattatgtgaacgtatggacttcgacacaaaaaacaactcatgcatgtaataattcccttgatatgcaaaactccaagcttaatttttcagtgttttagatgcaaggtttcttttgatcatttccttatgtggtctatatgtgcagggatggtgtgagcgagtctcaatttagccaagtactgaatgttgagcttaatcaaattataaaggtcatgctgtatcatttatttagtttagatttttttttttttttgtaaatctttttaacaggaatttcgcaatgcaggcatatcaatatatggatcaggggccaattcctaagttcacagtgatcattgctcaaaagaatcaccacacaaaacttttccaagaaaatactccagacaacgttcctccaggtgcagttctgtcctgttttaatacatctgatctgagggctatttatttacccccaataggttttgatgaagcactgtctttgcgaacagggactgttgtagattctggtattgttcatccaagacagtatgatttctacatgtatgctcatgctggacctatagtaagtcttcttgagccaatattttggaaatgattctgctgacatgtgatatttggggccatacattttcgtgctatatgtatgatggcattctgaaaattgtaaaatgtttgcctctttcagggtacctcaaggcccacccattaccatgtcttgctcgatgagattggtttcttgcccgatgacgtgcagaaactagttttgtcgctttcttatgtgtaagtacaggatagtttcctactttattcttgaatacacaaatcagaaagatgataatttgtgtggttgttttattgctctccctttctttgtgatcgtgcaggtatcagaggagcaccactgcaatatctgttggtatgttgatattcctagtcgcaatttgcttccttctgcattccggaacattatacctgcaatctgatcaatgctgttttctcttctcccagtggcacctatctgttatgctcatctcgcagcagcgcagatgggccagttcatgaaattcgaggaattcgctgagacttcgtctggaagtggtggtgtcccttcgtcatcaggagcagtggtcccagagttgccgcgcctgcatgctgatgtctgcagttcgatgttcttttgttgaggtggtgttagtcagctagtgtgcagcagggctgatccttcttttttttttgaaggaaccaaatacggagtacttgttaggcacttttgtagtactctagattgatactatgagatacatctaggttgggtagggagcatttttttttagatgatatagtgctcctaatgatatagttctgttagtgctcagctattaggaagtaaaggcttacccttgatggtaggtttatgaattcaagacgctaactttgcgccatatctaattgtcaaccagttaaacagatgattcgc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0265600, RefSeq:Os07g0265600