Os07g0281000

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Revision as of 08:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0281000| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001065909.1 GI:115471550 GeneID:4342926| Length = 435...")
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Gene Name

Os07g0281000

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001065909.1 GI:115471550 GeneID:4342926

Length

4352 bp

Definition

Oryza sativa Japonica Group Os07g0281000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:10710896..10715247

Sequence Coding Region

10711023..10711884,10713603..10713826,10714253..10714522,10715071..10715175

Expression

GEO Profiles:Os07g0281000

Genome Context

<gbrowseImage1> name=NC_008400:10710896..10715247 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:10710896..10715247 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccgacttccccatcatctgcgagtcctgcctcggcgacaacccctacgttcgcatgttaagagcagaatacgataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttggcgacctggccgggatgcaaggtacaagaagacagagatctgccagacttgttgcaaactgaaaaatgtctgccaggtctgccttctagatcttgaatatggtctgccggtccaggtcagggatacagcactttctactaattcaaacgatgcaatcccaaggagtgacgtgaaccgcgagtactttgcagaagagcatgatcgcagggccagagctggaattgattatgactcttccaatggtaaggcacgtgccaacgacaccattctgaaactccagagaacagcgccatattacaagaggaatcgagcccatgtctgtagtttctatgtgcgtggtgaatgtacaagaggtgctgaatgcccttatcgacatgagatgcctgaaactggagagttatctcagcagaacatcaaagatcgttactacggagttaacgatccagttgctttgaagcttttgagtaaggctggtgagatgccatccctgacacccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtcactgagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatggttctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctgcagaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgtggggcaagcctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatggaggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctcctgggatggaaggccagcagcaacctgcttcggcatcatactacttcaacattccagcaccgccagcggcagagcggacactgtacccttcgatggatccccagaggatgggtgccttggtcgagtcacaggagggcgatggcaaaccaggtccacagcaggctgggcaaggtcaggcatcaagcagctcaggacagagttatcctgagccgccaccaccatattaccatggtggtcagtatcccccctactatccaccttatggcggttacatgcccccacctcgcatgccataccagcagccaccacagtacccagcttatcaacctatgctggcaccaccagcacagtcgcaagctagctcattgcaacaaccagcaccggcaacgcagcagctgggtcaaggccctcagcaacagacaacccagaacggaatgacttaa</cdnaseq>

Protein Sequence

<aaseq>MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKEC KICARPFTVFRWRPGRDARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALST NSNDAIPRSDVNREYFAEEHDRRARAGIDYDSSNGKARANDTILKLQRTAPYYKRNRA HVCSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPS LTPPDDESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGA EKAAEELANKLVIKGVRLKLMWGKPQAPKPEEDEAGRQGHVAHGGMLPRAVISQQQSG DQPQPPGMEGQQQPASASYYFNIPAPPAAERTLYPSMDPQRMGALVESQEGDGKPGPQ QAGQGQASSSSGQSYPEPPPPYYHGGQYPPYYPPYGGYMPPPRMPYQQPPQYPAYQPM LAPPAQSQASSLQQPAPATQQLGQGPQQQTTQNGMT</aaseq>

Gene Sequence

<dnaseqindica>3364..4225#1422..1645#726..995#73..177#ctctctctctctctctctctctctttccctctcgacggcagcggcggcttcggcggcgcggcggaggcggagatggcccaccggctgctgcgggacgcgcaggcggacgggtgggagcgttccgacttccccatcatctgcgagtcctgcctcggcgacaacccctacgttcgcatggtatcgtaacctcgcccccaaaccctaaccctctctggttgatttgattcctccgcgtggccgtgggtgggttggcgttgcggccgagggatttgtaatctgggctggtttggtgcggtttctgttgtgtgtgttggggacttgcgggtagatcggctgcaaacctaggtgtttgattcggcggactgagcgttacagtcagtgtgtagcaattttagttgagaccaactaaaatgattgttgatagttctatcagagctctgaggtgaatttaacttcttcattttcatgtcagttagtataattagagaaattggtgtgcttgtgttgcaatgaagtcagcatgattataaaagttgtttcaagtaatttggcgtagctaacagaatgagaaattatcaagctaagacattgaattagggtccaagaatgtgtcctagatgtcagacattggctgccttaatcaaattatccttgttttcatctttactttccttcatttcttgacgtaggcacaagatttactggctttcttgttttcttggcagttaagagcagaatacgataaagagtgcaaaatatgtgcacgtccttttactgtcttccgttggcgacctggccgggatgcaaggtacaagaagacagagatctgccagacttgttgcaaactgaaaaatgtctgccaggtctgccttctagatcttgaatatggtctgccggtccaggtcagggatacagcactttctactaattcaaacgatgcaatcccaaggagtgacgtgaaccgcgagtactttgcagaagagcatgatcgcagggtatgtctcctttttcatcacttatcatttatattattctaaaccaacattcagaaattacaatactcaactaaatattgtttacatccatatccctgttcttttttcactttttttcctcctgcaaccaggtgtgtccccagtgttcttcgtttcttactgtcttctactgtaggagtaggataacacattaaagaaatgaatgggctttctttacaccagaaatcaatggtctaccatgatccactgagaaatgcaaaatgaatgcaccttaagcttatggatctcaataacaaaattgttcactttttgaagtactctgatctgacagattacctacacgtgttttctgattacatcattcatgagcaacttatttttctccattgctttgctaatggtatgcattgtttatcaaaaatgtaggccagagctggaattgattatgactcttccaatggtaaggcacgtgccaacgacaccattctgaaactccagagaacagcgccatattacaagaggaatcgagcccatgtctgtagtttctatgtgcgtggtgaatgtacaagaggtgctgaatgcccttatcgacatgagatgcctgaaactggagagttatctcagcagaacatcaaagatcgttactacgggtatgtttgtagtgattgtgcatacaatttttcgaattgcatgtttcttgtagttctctatagatattgctgtatttctatatctcattcagaggcaacgattattcaattaacgattatttcatcattgtactccaaagatgcatattgatctctttttgtaccttttagacctgttatttctattttttatattaagattgtatcatcagaattaaatccctgtgtagtgtctcaggatgcaaaccagcatatgcagttacttgtacctctggatatgaattgtatcaaaaatgtctatggattgataaagtaaaagagatatttctatatttcaattaatttctctatccaaacatggatgaaaattgggcttatctatatctatactccttcaaacattcctagtggtggcggtagttctgcctccaccaccaccaactgacatgtggtgcatgagattggtggctcccacatgagcactctgcagttcccctttcccctttcctagccatttgacttgcttacagtgggagccttgtgagggtcaagtgttccagttgggctgatcgaggaagcggcggctgccttggttggcagaagaatcaagggcatcgcttggagtcactgatacaggccaccacatgcagttgttttcagcggacaagccaaggcgctgtcccatggatggagtgatggcatgatggggaggcgagggagctgatgctgtgatgggaggtggaggccctctacgggagaggaggctggaggtgaaggcatccaccgtgtgctgctctctccacgagtgagttagcagagctcaggtgtgctacttggattggaagaggaatgggaaagaacctgtcaatgccttcacgtgagctgacttgtatcctctcaagttcgaatgtcgtcactagcagcaggtgcaggagacgttgtccagagttgagacaaagaaagagaaaggatttagaagggagaatatggagaagggaggaagaaaagcaggcagtgctggtgcagcttttgcgaggaagaacttctgtggtcaattttcttattgctttgcttttcatcgcctcgatcaaataaaacagaatcacaaacacaaaatatatctacagtacgaggcaatggttttcttacgcagataccatatgagattatctgtattatatcttgtatcatatactccattttggattcttttggtgacatgtttttattcggattgggtcgtaagtcctatattcatgaacttagatttatggggtccatgaaggatccaaaatatttcctgacaccgagcaaaactatgaatgaaaattataggcattaatgaccttcctcgatcaggtcaatgtggttcctgctagctgaaatttgtgcaagatgagaagcttcattcaaatctttgccttttcacttttcagatgaagaacactgcccagccaagtagaggccagatgttcttcttatgatcaagagagctcataattatgttttatgttaaacgatctgttacaacacatgggtatcttgttagatgcacaccaagcacagatctataaaatcatgttcatgagatgaactgacttactccctgttacaagcggggttaaacctctgtactcattggttcatattgcacttagtcctctctatatattatttcttctgcgttctctgacatattattttcttacactttgcagagttaacgatccagttgctttgaagcttttgagtaaggctggtgagatgccatccctgacacccccagatgatgagagtataaggacactttacattggtggccttgatagtcgagtcactgagcaggatttgagggatcaattttatgcccatggtgagattgagaccataagaatggttctgcagcgtgcttgtgcatttgtgacttacactacaagagaaggtgctgagaaagctgcagaggagctcgctaacaagttagtcatcaagggtgtgcgtctgaagctcatgtggggcaagcctcaagcaccaaaaccggaggaagatgaagctgggaggcaagggcatgttgcacatggaggaatgctccctagggctgtaatatctcagcagcagagtggtgaccagcctcaacctcctgggatggaaggccagcagcaacctgcttcggcatcatactacttcaacattccagcaccgccagcggcagagcggacactgtacccttcgatggatccccagaggatgggtgccttggtcgagtcacaggagggcgatggcaaaccaggtccacagcaggctgggcaaggtcaggcatcaagcagctcaggacagagttatcctgagccgccaccaccatattaccatggtggtcagtatcccccctactatccaccttatggcggttacatgcccccacctcgcatgccataccagcagccaccacagtacccagcttatcaacctatgctggcaccaccagcacagtcgcaagctagctcattgcaacaaccagcaccggcaacgcagcagctgggtcaaggccctcagcaacagacaacccagaacggaatgacttaatcttttattggtaatgttgtattcctggaatctgttctgtgggagattgtaacccttgttggtaaccggtttttgtatgttctaatttgtgattagcagtaaaactacccagtattgcttatctgaa</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0281000, RefSeq:Os07g0281000