BGIOSGA010112

From RiceWiki
Revision as of 15:32, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA010112

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA010112, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA010112-TA

Ensembl Protein ID

BGIOSGA010112-PA

Length

6759

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:29733903..29740661

Sequence Coding Region

29740497..29740661,29739338..29739400,29738714..29739136,29738193..29738274,29737999..29738060
,29737279..29737345,29736781..29736955,29736223..29736302,29736028..29736111
,29735684..29735800,29735485..29735570,29735270..29735376,29734881..29734972
,29734709..29734785,29733903..29734364

Genome Context

<gbrowseImage1> name=IndicaChromosome03:29733903..29740661 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:29733903..29740661 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATCCGGAGCAGACGTTCCTGCGGGTGCACGCGCGGCTGTCCGGGATGCTGTCGCAGCTGCTCACGCCGCGGATCCGCCTCGCGCTCGAGTACCTCTACCTCGCCGGCGCCGTCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAGCCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTTGTCCAAATCAAGATAATCAGTGGTGGACTATGGGTCAGCAAAGGTGCATCCTACATTATGGATCTTCAGAACCTGGGGCGTTCAGCTGAGAAAATTCTAGAGGTTAATGGTGATAGGTTCAATATTTTGGCATCTAAGTTTTGGTCAACTTGGGTTGGTCCTGGAGCTAGAAGGAGCAAAATTATGTTCAGAACTTGGAAGGGAGACAAGGAATTTGAACCACAACCAGAGAATGCAGCTGACACAGCTATTACCGCAACCACTTCAGGAGTATCGGATTCGAAGACAACTGTGGAGGGTTCTGCATACCATCCATTATCCGCAAAAGAATCATTTAAAGCAGCAGTTATGTATTTATTCAGAAAGTGGTACTTTCGTGTTGTCTCGTTCTGGAGGAATATAAAACAACTTTCAGATAATACTTTTCAATTAATGTTCAGATCAAACTGGAATGACTTCCTCCATACCATCAAGGGTATTCAATTACCAAGCGTGGATCATCTTGTTTCAACAATAGTACAGTGGTTTGAGAGACGAAGCAAAGCATTTGAACCTACCTATTTATATGGTGTGGAGAAGATTCAGAGAGTTCCTCCCAAATTGGATGCGAAAGCTGGGGCCTCAACATCACTGCTCCCTTCACCTAATGGTATGGTGGTGCTGTCCTCGCCTTCCATGCCTGGTTGTGTGCTGTGGGGCAATGAGATCGAGAAAGCATGTGCAACCGGGGGAGCAGTTGCATGGGAGGTAGGCGCAGTGAAGTGGCGTGAAAGAATGGAAGAGGAAGGAGACAAGTTGAAGAAGATATGGAGGGCCCAATGGTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTACAAACAGCTTAGTGAACTCCCCTGGTCATGGCTATTTATACAACTTTCAAACAAAGGAGCTTTATGATCTCAGTTACGGACATGAACCACCAGCAGGTCCAACAAGATTTGGAGATTATTTTGTGACGAAATGTGGTGTACTTTTAATGTCACTCTTTGTTTTTTTCACAACCACCATGTCTGTTTCATTTACCCTGAGAGAGACGCAATCCCGCATGCTTAGGTTCACAGTGCAGCTTCAACATCATGCACGCCACCAACTCCCCACATTTCAACTGATATTTGTCCATGTTATCGAATCATTGGTTTTTGTTCCGATAATGATTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGTGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAACGGGTGTTCAGATCACATCCTCAACCATCTATACATCAACATTACATATAGCAAGGGTAAATATGAGGGACCCTGGCGCAATGAATGAGGGCCTTGGTGCTGCTCGTGAAGCAGATGCCCTGCTGGTTCCGGATGAGCCTAACAGGAACCAACAAGAGGGTCAACCAATTGAAAATGCAGAGTTAGTGGCCAACAATCCTCTGCACTATCAAGATCAAAACCCTCAGCAACCTGGCAATGCTCCGGCAGGCTCTGGCTCCTTGAATCCATTTGGTTCCCTTTTATTGTGGTTGCTAGGAGGCGGAGCTTCTGATGGCATAGTATCTTTCTTCTCTATGTTTAGAGATGTCCGTGATCATGGTCAAGATTACACTGATCCACCTCGAAATGAAAATGGTCAGGTAACATAG</cdnaseq>

Protein Sequence

<aaseq>MDPEQTFLRVHARLSGMLSQLLTPRIRLALEYLYLAGAVALFCLLVVMHTNFVQQPGCSSEFSGIEFGEAQLVQIKIISGGLWVSKGASYIMDLQNLGRSAEKILEVNGDRFNILASKFWSTWVGPGARRSKIMFRTWKGDKEFEPQPENAADTAITATTSGVSDSKTTVEGSAYHPLSAKESFKAAVMYLFRKWYFRVVSFWRNIKQLSDNTFQLMFRSNWNDFLHTIKGIQLPSVDHLVSTIVQWFERRSKAFEPTYLYGVEKIQRVPPKLDAKAGASTSLLPSPNGMVVLSSPSMPGCVLWGNEIEKACATGGAVAWEVGAVKWRERMEEEGDKLKKIWRAQWWQQLLINSIVGYDTILTNSLVNSPGHGYLYNFQTKELYDLSYGHEPPAGPTRFGDYFVTKCGVLLMSLFVFFTTTMSVSFTLRETQSRMLRFTVQLQHHARHQLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLTLVWLCELFTMISVRTSISMQFFPRFFLLYFLVFHIYFFSYTYGFSYLAFSATAAFMQHLILYFWNRFEVPALQRFIRSRAHLHQQTGVQITSSTIYTSTLHIARVNMRDPGAMNEGLGAAREADALLVPDEPNRNQQEGQPIENAELVANNPLHYQDQNPQQPGNAPAGSGSLNPFGSLLLWLLGGGASDGIVSFFSMFRDVRDHGQDYTDPPRNENGQVT</aaseq>

Gene Sequence

<dnaseqindica>1..165#1262..1324#1526..1948#2388..2469#2602..2663#3317..3383#3707..3881#4360..4439#4551..4634#4862..4978#5092..5177#5286..5392#5690..5781#5877..5953#6298..6759#ATGGATCCGGAGCAGACGTTCCTGCGGGTGCACGCGCGGCTGTCCGGGATGCTGTCGCAGCTGCTCACGCCGCGGATCCGCCTCGCGCTCGAGTACCTCTACCTCGCCGGCGCCGTCGCGCTCTTCTGCCTGCTCGTCGTCATGCACACCAACTTCGTGCAGCAGGTGAGCATCCCGCCCCTCCTCGCCCTTCTTCGTCTTCTGCCCGTGCTTGTACTGCGCGCGTTCGTGCTAGCCTGGGTGTTGCGAATTTTGTGCGAACTGCCCTGGCCTGGGTTCGCCAATGTTGTCAATTCGACGCCCTGGTAAAAAATTGAGCAAGCCTGAGGCTAGTATCAAAGTTACCTGTGTGCGCACTGCGCAGTAGTTGCTGGATTTCTCTAGTTTGGCTACTGAATAGGAAACACTTATAATTTTAGCAACTTTTTAAGTTGTAATGTAACAGTAATTTCGATTAGTGATCCCCTGACCATCCTGGCTTCTGGCTTAGTCCTGCAGAGGTACTTACAATACCGCATTGTTTCAGATTTGGTGTATGCTAGTTTTTTGTTCTTCTCTGCAACTGCTTGTTCTGGAATAGTCCCACGCTACTGTAAAACTATGATATGCCAGCTATTCCTCTATTCATTGCTCCCCCAGAAACAGCATGCCAAATTTGCATTTGGTTTGCCTAATATGAAATCTTTAAGATGATTTTTTTTTCTTCGAATGTGTATGAATATGCTTATGGTTTCTGTTATAGTGTGAACATATCGAGATGAAAAAGCATGAGGGTATTGCTACGTAAGCTAACTTTGTAGTAGTGATCCCCTCCTATTCTGGTAAATACTACTGCACTTCAAATGAACGAGATTATATACTCTCTAGGAATGTGTTAGTGTTAACGTAGATTGCATCCAGTTTGACGTGTTTGTTGATCCTTATGCAATTGATTTAGTACCACGTGGAAACTAGAACAAAATAGAAGTTTGATAAACCATTCCGTTCCATGTCTTAAGTATACTGCGTTGTGCACACATCATAACTTACTTGTAAGTGCATGCAACTACAACCCTTAAATCTCCTAAAAAGTATCATTCATATATATTTACATGCTGAAAGCTATCTCCTGTTCAACTTAGAAACACAATATCCTGGATTTGAAATAAAGAAAAATGCCAAACCTTTTTATCTGGTTGTTTCTTTTTCCTTTACCTTGTTCCATAATAGTCTAGTGTGCATATGTAGCCTCACAACTTTGAGTTACCTTTTTCATGTGAAGCCTGGCTGTTCAAGCGAGTTTTCTGGGATTGAATTTGGTGAAGCGCAACTTGTCCAAATCAAGGTACACATTGCTGCTTGTCACTATTTTGCATTTCTTGCTGTTAGACTCTTTGCTATTCTGTGAAGTGTGTCGAGCATTTTCTCCTTTTTGCACTTGGGACTCAAGTGTGATAATATTCCTTATGTTTTTTCCCTTGCTTGCAATACTAGCTCATGTTTCCTATTGGTATGACTTGTTTGTTCCCTGCCTTTAAATTTGTAGATAATCAGTGGTGGACTATGGGTCAGCAAAGGTGCATCCTACATTATGGATCTTCAGAACCTGGGGCGTTCAGCTGAGAAAATTCTAGAGGTTAATGGTGATAGGTTCAATATTTTGGCATCTAAGTTTTGGTCAACTTGGGTTGGTCCTGGAGCTAGAAGGAGCAAAATTATGTTCAGAACTTGGAAGGGAGACAAGGAATTTGAACCACAACCAGAGAATGCAGCTGACACAGCTATTACCGCAACCACTTCAGGAGTATCGGATTCGAAGACAACTGTGGAGGGTTCTGCATACCATCCATTATCCGCAAAAGAATCATTTAAAGCAGCAGTTATGTATTTATTCAGAAAGTGGTACTTTCGTGTTGTCTCGTTCTGGAGGAATATAAAACAACTTTCAGATAATACTTTTCAATTAATGGTAAGAAGTTGATTGTTATCATTTCAGCATTCATGTTCCCTTTATGTTACTCTGGTATTACAAAAGATTCTTGTATAGTTGGACCTGGGAGAATCATTTATGCGGGTAATGGAGTAGTAGTTAGTCCATGTGGTTGCTTGGCGCATGTCACCTTGATATCTAACTTGCTGTGTGAGGAACACTTGGAGAATTGTGGACTAGTAGTATTGATTTGTCAACATATGTCTTACTCATATAAATGATATTCATCAAGTTTTGGATTAAGGAATGTTTGAATGCCATGCAGTGAAATAACATTTATTTTGATCAAGTTACTCTTTCATGATTCGTGTGATGCTGATTTTTGTGCTTTTTATTATCTGTATCACTTAATTAGTTAAACAAAGTAACATGCACTCATTTACCGAGGGTTATTTTTTCTTGATTATTTTAACAACAGTTCAGATCAAACTGGAATGACTTCCTCCATACCATCAAGGGTATTCAATTACCAAGCGTGGATCATCTTGTTTCAACAATAGGTATGTTGTCTGGCAGTAAACTGGTCATATGATCTAGTGGTGCCTATATGACTTTTCTTATCTTTGCCCTTTGCTGTCAACTCACAAGGGTCTCATTTTCTCTAACTTCTCGTGGTATGTTGTTTATTACAGTACAGTGGTTTGAGAGACGAAGCAAAGCATTTGAACCTACCTATTTATATGGTGTGGAGAAGGTAAGGTTCATTTTGGCATATTGTTATCACCTATTCAACTTAATTATGTTTGTTCTAGTATGTTGTTAAGTTGCTTGATTACTTCTTTATGAACTCCCTAGCAAAGTAAGAATCAACTTTTGCCAGAAATGACTGGAGAATTCAACTATCACTCACTTCAAGAACTCTCTTATATGTTGCCTTCTTTCCTGCAGGGATATTTCTTGCTTTCAGAAGGGGCCAAAGTTCGTCATGGTGTTCGGACTATAAATATCACAATTTCTGCTCGAAATCCTTGCTTTGGAAATAGGTCATTATCGAGTACTTGCTCCTCATAATGGGCATATCACACTAGATGTGTCTCCAAAAGTTTCCACTTGACATCTTTCTACTTCATGCTACTTAGATTAGATTCTAACTTTTATGTCCTGATTCTGCCCAAAAGTTCATGTTTGTGTAATTCATTGCTCTGGCAAGTCTACTTGTTTGATGCCATTCAAAGTTCATGAGTTCCTTTAAATGCATTGGAAGCTGTCATTCCACCATATGCCATCGAACCAAATTTTTTTGCCCTCTTTTGCCATCCACGTCGCTCTTCCGTTAGCTAGCAACAATCACAGCTAGGAACATTATCATTTTCTTGTGATAATGGTGAAATTACTCTTTGCGCATAGATTCAGAGAGTTCCTCCCAAATTGGATGCGAAAGCTGGGGCCTCAACATCACTGCTCCCTTCACCTAGTGAGGCTAGGTTATGATGGCGTGAACCGCATGGTGGATTGGCAGCTCACTTCCCACCTCTGTTGAACTGGCAGCTTAGCAAGGCCATTCTATGTGTGGTATGGCTAGATACCAGTGCTTGCTTTGTTTTGTTATGTCTAAAGAGAGGAGAGAGAGAGAGAGAGTTTGTTGGGGGGGGGGGGAGGGGGGTTGCCAGGAGGAGCACGGGCACCGTATGTACGCCTGCTGCAGACTGGGGTTCATTTCCGTGCCCATGAAGAAAAAAAATGGATTCAGATTGCTGCATACCACACATGCTTGCATCTGCTGTGATGCCATGACAGATGGTATGGTGGTGCTGTCCTCGCCTTCCATGCCTGGTTGTGTGCTGTGGGGCAATGAGATCGAGAAAGCATGTGCAACCGGGGGAGCAGTTGCATGGGAGGTAGGCGCAGTGAAGTGGCGTGAAAGAATGGAAGAGGAAGGAGACAAGTTGAAGAAGATATGGAGGGCCCAATGGTCATCTTACCGCCCATGTAACAGTTTGCTAACATTAGGATGATGAGAATGGCAAAAAAAAAAAAGGCAAGAGAAGTTTAGGCATTGGTGAATGGAACAATAATTTTGACATGGCATATTAGGAAACAAACTCATAAACTTTGGATGGCGTGTAAGGACTTTGGATGGCATGCAAGGAATTTTCTCATTTTGTTTATTGATCTTTGTTTTATATTGCTCTTGTACCCAAATAGTTGGAACATTTACTGAGTTTCAAAGAGCTGCATAAAAATTCTAGCGTTACAAATATGGAATATCTAATTGCTACTTAAAAATCTGTCATTTATATTGAGAACTTAAACAAGATTTTGCATTCGTTCTGTCTTCTTTCATTTTGCTTCTGTAGTGGGTATCTGCAGAATGTGATAATGCTCCACTGTTCTTTCATGCCCACCGCTATGTTCTTATGCTATCCAATCTCTCTTTTTTAACCTTTCAGGTGGCAACAGCTTTTAATAAACAGCATTGTTGGCTATGACACTATACTTACAAACAGCTTAGTGAACTCCCCTGGTCATGGTATGCTTCTGATGTGATTTTGCTTTTGGTACTTTTAACTATCAGGATGTTCTATGCAACTGTCGCAAACTTAGTTAGCTCACATATTTTGTACTTTGGTTTGATATGCAGGCTATTTATACAACTTTCAAACAAAGGAGCTTTATGATCTCAGTTACGGACATGAACCACCAGCAGGTCCAACAAGATTTGGAGGTTTGTATAGTGCTGATTTTACAAAATTTGCCATCCCAAATATGTTCACCTGAATGACTGCACTTTTATAATGTGTTCAGCTATTAGTGGTTTTAATGCTTTATAAATTTGTACCAGATGATTCCAACAGCTTACATGCCACCTGATAATTCTATTTTGTTGCCTTTCATATCTTATTTTCATTTCTGCGTATTTAAATCTTATCTATTGCAACTTTTGTGGTGCAGATTATTTTGTGACGAAATGTGGTGTACTTTTAATGTCACTCTTTGTTTTTTTCACAACCACCATGTCTGTTTCATTTACCCTGAGAGAGACGCAATCCCGCATGCTTAGGTTCACAGGTTTGTGCTTATTGCTTTACGTTGTTTCTTGGCCTGCTAGATGCTCAACTTGTTATTATGATATTATCTTATGGTAATAAATAATATTTTGTTTTCTTCATTGAAAATTTCAGTGCAGCTTCAACATCATGCACGCCACCAACTCCCCACATTTCAACTGATATTTGTCCATGTTATCGAATCATTGGTTTTTGTTCCGGTATGATATTTTTTTTCCTTAATGAGCTGAAAATTTTGTGGCTGTTTAGATGTATCTACTCAACAGATTTCTCATATCTTACTAATTTCTTTGTTGTGATCATTGCAGATAATGATTGGGATCCTCTTTTTTCTATTTGAGTTCTATGATGATCAGTTGCTTGCATTTCTAGTTTTGACTCTTGTATGGTTGTGTGAGCTATTTACGATGATCAGGTACTGTTTCCATATACATATTGCTGGAATGCTTTACTATTTCGAGGAAATACTATTTTAATCATGTGAGATTTCTGTGCTGTGAAGCGTCTGTCCTACTAACTTATTCATGTGAAATTATGAGGAAACAAACAGGGTTTAGTCATATGAGAGAGCAATTAGATTAGAATAGTAGGCACTTGAGCATAATATAGGTGCATTTAACATTTGCAACTTTCAAGCATGCATTATCAGAATTGTTGTCATGCATAGCAAATTCGGTCTGTCTGAATTTACTGAATTTTGTGTCCTTTGCAGTGTGAGGACATCTATATCAATGCAGTTCTTCCCGCGCTTTTTCTTGCTGTATTTCTTGGTTTTCCACATTTACTTCTTCTCGTACACATATGGTATGACTACATATGTCTTTTTGGTGACCTATATTGGCAAGAAACTACTGGAATATCCTATCGATATATGACTTGCATATTTCTGTATTTATCAGGCTTCTCCTACCTGGCCTTTTCTGCCACCGCGGCGTTCATGCAACATCTAATTTTATATTTTTGGAACCGCTTCGAGGTATGCTAATATGCATTTTTACCTGTGTATTTCCTGTTCTTTATTTTGGACTTATCAGTCATTACTGCTTGTTTATTGCTTTGGCCTGCAATTTTTTTTTATATTTTCCCCTTTGATATTAGGCCATTTCTAATTTCTGAACACTGCTTAGGATTTAGTGCTAGCCTTGCTTTCATCTTCATTTATTAAACTGGAATGATCACCTGAACTTGGTCAATTCACTGAGGAAATAGATTAGGGTTCACGCAAGTAGGGGACAAATTGTATATTTAATGCATGTTTAACAGCAAAACAAAAAAAAAGTCCATGTCCCCATTGTATTTACTTGGCTTGTGTTGCTTTAGGTGCCAGCCCTTCAGAGATTCATTAGAAGCCGAGCTCACCTTCACCAACAAACGGGTGTTCAGATCACATCCTCAACCATCTATACATCAACATTACATATAGCAAGGGTAAATATGAGGGACCCTGGCGCAATGAATGAGGGCCTTGGTGCTGCTCGTGAAGCAGATGCCCTGCTGGTTCCGGATGAGCCTAACAGGAACCAACAAGAGGGTCAACCAATTGAAAATGCAGAGTTAGTGGCCAACAATCCTCTGCACTATCAAGATCAAAACCCTCAGCAACCTGGCAATGCTCCGGCAGGCTCTGGCTCCTTGAATCCATTTGGTTCCCTTTTATTGTGGTTGCTAGGAGGCGGAGCTTCTGATGGCATAGTATCTTTCTTCTCTATGTTTAGAGATGTCCGTGATCATGGTCAAGATTACACTGATCCACCTCGAAATGAAAATGGTCAGGTAACATAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA010112