Os07g0456700

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Revision as of 08:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0456700| Description = Similar to (1,4)-beta-xylan endohydrolase (EC 3.2.1.8)| Version = NM_001066096.1 GI:115471924 GeneID:4343146| Length...")
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Gene Name

Os07g0456700

Description

Similar to (1,4)-beta-xylan endohydrolase (EC 3.2.1.8)

Version

NM_001066096.1 GI:115471924 GeneID:4343146

Length

5675 bp

Definition

Oryza sativa Japonica Group Os07g0456700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:16544515..16550189

Sequence Coding Region

16544839..16544946,16545500..16545864,16545940..16546081,16546429..16546793,16546871..16547030
,16547436..16547773,16547875..16548052,16548191..16548724,16548913..16550028

Expression

GEO Profiles:Os07g0456700

Genome Context

<gbrowseImage1> name=NC_008400:16544515..16550189 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:16544515..16550189 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggaggcgctgggggtgcctctcctccctgtgccgccctcgccggggtggacgcgcggcggcggccccgctcccgcagccagatccaccgcgtctcgagtccaaggaagtagaggagcacggcgcttccgataaagttgtcatggagaacattctgtcaaacaatgatttttcggaaggtctacatttgtggcatcctaatggttgccatggatttgtggctgttgaaggatcaggttatcatcatggaataaggcctcactcagggtcaaattatgccgtacttactcgtcgcacacataattggcaagggcttgagcaggacataacagaaaaggtcactgttggtactgagtacattgttgctgcccatgtcagagtccatggtgaactcaatgagcctgttggaattcaggccactctaaaacttgagggcgatggttcttctacgaactatcaatcagttgcaaggatctcagcatcaaaagactgttgggagaagttggaaggttcatttgaactaaaaactctaccaagacgtttggtattctacattgaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaagaaaacagagcgggctgcatccaaactggttagtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaaccctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagagggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttgaacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgttagagttgatgggaatatccatacgaaagttgaagttaaagcaaccttgaggttgcataacacagatgattcaacgcactacagtccagttggaagcctgttagcttcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgtgtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattccgtaaatgtaacttgctctggatatcagcagttaaaagaagtaaaagtaccaagtggagttgataccatcgttaagaatcctcactttgacgaagggttaaacaattggtctggaagaggatgcaatatctgtaggcatgagcttactgcttatggaaatgtcaagcctctaaatggcagctattttgcttcagccactggacgggtccacaattggaacggtatccagcaagatatcactggcagggtacagagaaaagttctttatgagataagttctgctgtccgcatatttgggagtgccaatgatacagaagtctgcgttactctgtgggtacaagaatatggccgtgagcgatatgtaagccttgcaaagaacccggcatctgataagcaatggacacatctaaaaggaaagttcctcctccatgccccgttttcaaaagctgttattttcgtagaggggccacctgcaggcattgatattcttgttgatggccttgtcctatctccagcaagaaaactccatgctgcaccccgcccaagaattgagaatgtttcatatggagctaatgtaatacataacagtgctttcagtcatgggctttctgggtggagtcccatggggtcatgtcgattgagtatccatactgaatcaccccatatgctttctgccatcttgaaggacccctcagctaagcaacatataagaggttcttatattcttgccacaaaccgcactgatgtgtggatgggcccttcccagttgataactgacaagcttaggctgcacaccacttacagagtttctgcttgggtacgtgctgggtctggaggacatggacgttaccatgtaaatgtttgtcttgctgtagatcatcagtgggttaatggtgggcaagtagaagctgatggcgatcaatggtatgaactcaaaggagcattcaagcttgaaaagaagccatccaaagttactgcatatgttcagggaccgcctccaggtgttgatctcagagttatggggttccaaatttatgctgttgatagaaaagcacgttttgaatatctgaaggagaaaactgacaaggtaaggaagcgtgatgtcatcctgaagttccagggatcagatgctgcaaacctttttggttcatctatcaagatacaacagaccgagaacagttttccatttggatcatgcatagggagaagtaacattgagaatgaggatcttgctgatttcttcatgaagaactttaattgggctgtatttgaaaatgaactgaagtggtactggacagaggctgaacaagggagactaaattataaagattctgatgagttgcttgaattttgccggaaacataacattcaagttcgtggtcactgcttattctgggaagtagaagattcagtccagccatggattcgatcattacatggtcaccacctgatggctgctatacagaatcgtttgcaaagtctgttgtcaaggtacaaaggtcagtttaaacatcatgatgtaaacaacgagatgcttcatgggtctttctaccaagatagactgggaaatgatattagagctcacatgtttagggaagcacataaacttgacccttcagcagtactctttgtgaacgactacaatgttgaagatcgatgcgactcaaaatctacaccagaaaaattaattgaacagattgttgatctccaagaaaggggtgctccagttggtgggattggcttgcaaggtcatatcacgcatccagtgggtgacatcatctgcgattccctggacaagctctccatactgggtctccctatctggatcaccgaattggatgtcacggctgagaatgaacacatccgagccgatgatctggaggtgtaccttcgcgaagcctttgcgcatccttccgtggaggggattatcctttggggattctgggagctgttcatgttccgagaacacgctcacctggttgatgttgatggaacgatcaatgaggctggcaaaaggtacattgcactgaagcaagagtggctaaccagcattactggcaacgtggatcaccatggagagttgaagttcagaggctaccatgggtcatacacggtagaagtagcaacgccttcaggaaaggtaaccagatcgtttgttgttgacaaggataacgctgttcaggtggttaccctgaacatttag</cdnaseq>

Protein Sequence

<aaseq>MRRRWGCLSSLCRPRRGGRAAAAPLPQPDPPRLESKEVEEHGAS DKVVMENILSNNDFSEGLHLWHPNGCHGFVAVEGSGYHHGIRPHSGSNYAVLTRRTHN WQGLEQDITEKVTVGTEYIVAAHVRVHGELNEPVGIQATLKLEGDGSSTNYQSVARIS ASKDCWEKLEGSFELKTLPRRLVFYIEGPPPGVDLLIDSVTISYKKTERAASKLVSGT ENIISNYDFSEGLHLWNPICCHAYVASQWSGFLDGIRGSSGENYAVVSKRTESWQGLE QDITDKVSAGTAYAVSAYVRVDGNIHTKVEVKATLRLHNTDDSTHYSPVGSLLASKEK WEKMEGSFCLTNMPKRVVFYLEGPPAGVDLIIDSVNVTCSGYQQLKEVKVPSGVDTIV KNPHFDEGLNNWSGRGCNICRHELTAYGNVKPLNGSYFASATGRVHNWNGIQQDITGR VQRKVLYEISSAVRIFGSANDTEVCVTLWVQEYGRERYVSLAKNPASDKQWTHLKGKF LLHAPFSKAVIFVEGPPAGIDILVDGLVLSPARKLHAAPRPRIENVSYGANVIHNSAF SHGLSGWSPMGSCRLSIHTESPHMLSAILKDPSAKQHIRGSYILATNRTDVWMGPSQL ITDKLRLHTTYRVSAWVRAGSGGHGRYHVNVCLAVDHQWVNGGQVEADGDQWYELKGA FKLEKKPSKVTAYVQGPPPGVDLRVMGFQIYAVDRKARFEYLKEKTDKVRKRDVILKF QGSDAANLFGSSIKIQQTENSFPFGSCIGRSNIENEDLADFFMKNFNWAVFENELKWY WTEAEQGRLNYKDSDELLEFCRKHNIQVRGHCLFWEVEDSVQPWIRSLHGHHLMAAIQ NRLQSLLSRYKGQFKHHDVNNEMLHGSFYQDRLGNDIRAHMFREAHKLDPSAVLFVND YNVEDRCDSKSTPEKLIEQIVDLQERGAPVGGIGLQGHITHPVGDIICDSLDKLSILG LPIWITELDVTAENEHIRADDLEVYLREAFAHPSVEGIILWGFWELFMFREHAHLVDV DGTINEAGKRYIALKQEWLTSITGNVDHHGELKFRGYHGSYTVEVATPSGKVTRSFVV DKDNAVQVVTLNI</aaseq>

Gene Sequence

<dnaseqindica>325..432#986..1350#1426..1567#1915..2279#2357..2516#2922..3259#3361..3538#3677..4210#4399..5514#gttcgtctccttggcatctgatcctattcccctctccgcgcacgtcgggtttcccccccgtggacaacgcaaccgaccgaccaagctgcggacagcgccgtctctgctgtctctctctgtatgcttcccttcctcctcaagctgggcctcggtggtcggtggttaggtgaaggtaaaccaccggctttctcacgcgcctttctttctgttcatttccttggggtttaattcttggttgccagcgagcccggtaggcagtagtccacccaccggcaggttcttgctcctcctcctcagccgctgccggatttgagatgagatgagatgaggaggcgctgggggtgcctctcctccctgtgccgccctcgccggggtggacgcgcggcggcggccccgctcccgcagccagatccaccgcgtctcgagtccaaggtatctatatatcatccgtagctactagctagtgcctttgtttctttccaacttccaagggtaaatgagttttgctagttctctgacctggaaggatccaggatagttttgcttggtggtgccatcccttgctgattgactgcgtaccaaccgcaaagggcgcaaggaatgtttagtcagggcgtgtttacagtgtgattgatgaaaaatggtggtggagatcctaccaataagaaatggaattatcttttaatttcatggttggaattttgattgtttgcaagatatatagtcctaagagttaaatttcaaggttggaatgcaagatatgtatagttgtagagtttgacattgtaggaaaggatgaactagataccactaaaaaacatacagatccagtgatacacactaatatggtttgagacctatagttccacgagtccctaacaatctacatgtgtgataggatgttagctgtccatgaatttcagttcctctcccaatgacatggactagcaatgcagaaatttatttatcatacaatgttgagcaggaagtagaggagcacggcgcttccgataaagttgtcatggagaacattctgtcaaacaatgatttttcggaaggtctacatttgtggcatcctaatggttgccatggatttgtggctgttgaaggatcaggttatcatcatggaataaggcctcactcagggtcaaattatgccgtacttactcgtcgcacacataattggcaagggcttgagcaggacataacagaaaaggtcactgttggtactgagtacattgttgctgcccatgtcagagtccatggtgaactcaatgagcctgttggaattcaggccactctaaaacttgagggcgatggttcttctacgaactatcaatcagttgcaaggtattttaactggaaggtgattttatagaatattatacaccatcatggatttatcagttgaagttgttttaccaggatctcagcatcaaaagactgttgggagaagttggaaggttcatttgaactaaaaactctaccaagacgtttggtattctacattgaaggcccccctcctggtgtagacttgctcatagattcagtcaccatctcctacaaggtatgcttttaaatctctttgcttatgttcatgtcagagcaatcttgtgatatatgaatcatgctctaaaagtctgatttaatgctgtcttaatatgtccacaccatatttctcagtagtcatagcaaagaagaggaaaaatcatacactaagactaattgtgatcatgatatatttttcttaacatgccagtacatactactacagtttttgctatgcgtagttgagacatgtcatgtttttttccccatcaagctatcagtggtgcttaaaggttgacattgtattattcgattggatttgttactctaagctaccattttctaactacttcagagtttctgtagaaaacagagcgggctgcatccaaactggttagtggaacagaaaacatcatttcaaattatgatttttcggaaggccttcatttgtggaaccctatctgctgtcatgcatatgtggcatctcaatggtctggtttccttgatggtattagagggagctcaggagaaaattatgctgtagtttcgaagagaactgaaagctggcaaggtcttgaacaagatattacagataaagtatctgctggtactgcttatgcagtatcagcctatgttagagttgatgggaatatccatacgaaagttgaagttaaagcaaccttgaggttgcataacacagatgattcaacgcactacagtccagttggaaggtacatttcataaaagttgttcaacgatcaaattttttctcacctctcctctaatttttcccttcttgatttaatagcctgttagcttcaaaagaaaagtgggagaagatggaaggatccttttgcttgacaaatatgccaaaacgtgtagtattctacctggaaggacctcctgctggcgtggaccttatcattgattccgtaaatgtaacttgctctggatatcagcagttaaaagtgagtgcttttccaccagcatttgctttaacctttttctaagaaacgttattaactttttcttcatgtgaatcttggcgtgatacatgtttctcggaagtataattaggaggctgagcaactagcttgaatttactgattattgaatgtagagtgctaaaattcttcttagccaaaatttatgttttgaaccattgctatttttctgacctaatgtattcccaaataggttttttagtgcaaaggggtaacacatagttgattttttttacaaatttaaatatgtctgcttctaccttcagtggatttatctcatcatatgttcattcatgcttttcctgctatataatacaaacattgcctttttagccgatgcttattacttcttaatctttctttccaaaggaagtaaaagtaccaagtggagttgataccatcgttaagaatcctcactttgacgaagggttaaacaattggtctggaagaggatgcaatatctgtaggcatgagcttactgcttatggaaatgtcaagcctctaaatggcagctattttgcttcagccactggacgggtccacaattggaacggtatccagcaagatatcactggcagggtacagagaaaagttctttatgagataagttctgctgtccgcatatttgggagtgccaatgatacagaagtctgcgttactctgtgggtacaagaatatggccgtgagcgatatgtaagccttgcaaagtaagtatatgcttatttcattggttacactttctgtgacaagtggcagcgttatttttgtaaacatagactggtttactaacatattcttgtatacaaaggaacccggcatctgataagcaatggacacatctaaaaggaaagttcctcctccatgccccgttttcaaaagctgttattttcgtagaggggccacctgcaggcattgatattcttgttgatggccttgtcctatctccagcaagaaaactccatgctgcaccccgcccaagaattgaggtttaaactaattccttctgactaacattcttatttaaatgatcttgatacatgtttagaagtttatcaaatcatgatgatggacagtgaaattttgaacaccaattctgaatcaaggataatttctttatactgcagaatgtttcatatggagctaatgtaatacataacagtgctttcagtcatgggctttctgggtggagtcccatggggtcatgtcgattgagtatccatactgaatcaccccatatgctttctgccatcttgaaggacccctcagctaagcaacatataagaggttcttatattcttgccacaaaccgcactgatgtgtggatgggcccttcccagttgataactgacaagcttaggctgcacaccacttacagagtttctgcttgggtacgtgctgggtctggaggacatggacgttaccatgtaaatgtttgtcttgctgtagatcatcagtgggttaatggtgggcaagtagaagctgatggcgatcaatggtatgaactcaaaggagcattcaagcttgaaaagaagccatccaaagttactgcatatgttcagggaccgcctccaggtgttgatctcagagttatggggttccaaatttatgctgttgatagaaaagcacgttttgaatatctgaaggagaaaactgacaaggtaaactttccttacttcttttgtatgttaagatgataaatttatgtctgcagaagcttgaaaagaatctttattttcttcatggcaattttagaccaaaattttattctataaagtatccattgctttgcttataatagtgattgtgggcaacattgaagttacatttccttctttttcccaaataggtaaggaagcgtgatgtcatcctgaagttccagggatcagatgctgcaaacctttttggttcatctatcaagatacaacagaccgagaacagttttccatttggatcatgcatagggagaagtaacattgagaatgaggatcttgctgatttcttcatgaagaactttaattgggctgtatttgaaaatgaactgaagtggtactggacagaggctgaacaagggagactaaattataaagattctgatgagttgcttgaattttgccggaaacataacattcaagttcgtggtcactgcttattctgggaagtagaagattcagtccagccatggattcgatcattacatggtcaccacctgatggctgctatacagaatcgtttgcaaagtctgttgtcaaggtacaaaggtcagtttaaacatcatgatgtaaacaacgagatgcttcatgggtctttctaccaagatagactgggaaatgatattagagctcacatgtttagggaagcacataaacttgacccttcagcagtactctttgtgaacgactacaatgttgaagatcgatgcgactcaaaatctacaccagaaaaattaattgaacagattgttgatctccaagaaaggggtgctccagttggtgggattggcttgcaaggtcatatcacgcatccagtgggtgacatcatctgcgattccctggacaagctctccatactgggtctccctatctggatcaccgaattggatgtcacggctgagaatgaacacatccgagccgatgatctggaggtgtaccttcgcgaagcctttgcgcatccttccgtggaggggattatcctttggggattctgggagctgttcatgttccgagaacacgctcacctggttgatgttgatggaacgatcaatgaggctggcaaaaggtacattgcactgaagcaagagtggctaaccagcattactggcaacgtggatcaccatggagagttgaagttcagaggctaccatgggtcatacacggtagaagtagcaacgccttcaggaaaggtaaccagatcgtttgttgttgacaaggataacgctgttcaggtggttaccctgaacatttagcttgtgagatatgttcttatggagagtgaggtatatatatactgcgacatgtctttttggatgattagagtttactgttttctgtcaacaatttaccatgtatacgaactgctgaaattgctgtcatgccacttattaatgccatactcacatttaccttt</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0456700, RefSeq:Os07g0456700