Os07g0485000

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Revision as of 08:36, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0485000| Description = Similar to Trehalose-6-phosphate phosphatase| Version = NM_001066190.1 GI:115472112 GeneID:4343248| Length = 4411 bp...")
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Gene Name

Os07g0485000

Description

Similar to Trehalose-6-phosphate phosphatase

Version

NM_001066190.1 GI:115472112 GeneID:4343248

Length

4411 bp

Definition

Oryza sativa Japonica Group Os07g0485000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:18476350..18480760

Sequence Coding Region

18478488..18478691,18478785..18478925,18479014..18479085,18479197..18479325,18479442..18479498
,18479568..18479669,18479776..18479853,18479923..18480063,18480230..18480322
,18480425..18480487

Expression

GEO Profiles:Os07g0485000

Genome Context

<gbrowseImage1> name=NC_008400:18476350..18480760 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:18476350..18480760 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggttcctgcggtaacggtagaagctctgaatatgatgatcctgcatcattagagaagatggaggaactggttttacctctgaaattgatgcccttacacaccaatggccggttgtatgacatgaggttgtcctcacctactgctacctgtgtgatcaatagttcatctggttcattcgacccgatctaccgagcttggacgaagaagtatccttcagctctaaatgcctttgaccacattgttgcctatggcaaagggaagaagatagcgctgtttttggactacgacggtacactgtcgccaattgtcgatgaacctgacaatgctatcatgtctgaccagatgcgcgaggtggtgaggaatgctgccttgcatctacccactgcgattatcagtggaaggtctcgtgataaggtgtttgattttgttaaactaacagaattgtactatgctggtagccatggaatggacatcatgggtccagttggggaacatgattcagttactaaccataggagctccattaactcaaatagaaagcagggcaagggagtgaagatcttccaggctggtactgaattcttaccaatgatcaatgaggtttttagattgctcatcgataagacaaaggcaatcgacggtgtgaaaattgagaacaacaagttctgtgtatcggtgcactaccgcaatgttgaggagaagaattggcaacttgtttctcaatgcacaaatgatgtcctaaaagtctaccctcgcctccgattgactcatggacgaaaagttttggaaattcgtccagtgatagactggaacaaggggaaggctgtggagttcttgctggactccctagatctagctagctgtaaaaatgttctccctatttacatcggggatgattgtaccgacgaggatgcttttaaggttcttcgtgacgataaaaggggtttcgggattctggtgtcatctgtaccaaaggattctcatgccctatattctctgattgatccatctgaggttatggaattcttgaaaagactagtgatgtggaagaacgaagaagcatcacataataagtag</cdnaseq>

Protein Sequence

<aaseq>MGSCGNGRSSEYDDPASLEKMEELVLPLKLMPLHTNGRLYDMRL SSPTATCVINSSSGSFDPIYRAWTKKYPSALNAFDHIVAYGKGKKIALFLDYDGTLSP IVDEPDNAIMSDQMREVVRNAALHLPTAIISGRSRDKVFDFVKLTELYYAGSHGMDIM GPVGEHDSVTNHRSSINSNRKQGKGVKIFQAGTEFLPMINEVFRLLIDKTKAIDGVKI ENNKFCVSVHYRNVEEKNWQLVSQCTNDVLKVYPRLRLTHGRKVLEIRPVIDWNKGKA VEFLLDSLDLASCKNVLPIYIGDDCTDEDAFKVLRDDKRGFGILVSSVPKDSHALYSL IDPSEVMEFLKRLVMWKNEEASHNK</aaseq>

Gene Sequence

<dnaseqindica>2139..2342#2436..2576#2665..2736#2848..2976#3093..3149#3219..3320#3427..3504#3574..3714#3881..3973#4076..4138#ggttgatcgaggtgagcgtttcctgacctacttgctcggattaattacaaattgatttgatcacgtagataattacatcatcatcatattgatggatggatgcttgcacatatatgcatgcgttttgaatctggtgatgtaatgatatccaattaataatcttgctgcaacacgaaagctcagccagtttaattgatttgatttagttaatgccatcgatctcaggcttgattatcgattggctgttgaatgcacggattaatcaaataggttgaaggcacgcaatgcaaaattccaaattgattgtggacctcttcggtttctccttgtataagaccttgaatttagaaattattagtgagctatcgaaagttttcagtggcatcacatattatctgcttacttggaacatatagaaaaatagaattattaattaataaattaattgtattgagcattatacttccttagtctgagagtatatagcattgggcataaagttagtattaactattcaccatgtaactagcttcttagtaaaggtacaaattaaggactgaagagaaactccagacttttaatcttcaaactgaaggcaagtaatacattttcagcccttccatttagttccttggaggatcaaattcaaatgttgcgacggatgaagacgcacgaaatttgatgcttttatcgcacgttcatgtagtatttggtcaatcgatctctgcatcatgccttgaccaagatgcatatttagtttgatgatctctgttgcttccaattgcactccattaattgtttgaactaatagtcgttttgcttcatgtaatcgaatgcttcctgcgttcgattggtgagagaagtgcactccaatgctgtaccaacagtactcttgggtttttctcttaggagagctttatttagagtgaaagggacttcctaattaagatttctttattttgaaagaagctagtaattaagatttcttaacatatgcacacgtgaagttataaaacatgactcaaatctgatgttgatgtgtgttcgaccaagtccctaatcagtttttgcactttttcttctgatttctcacgccaactgatcaattaaggcaagtaggattttagttgtgttcttttcttattgttttcctttctcttgcttttcgctttctcacctcctacctccttggagacagtccacaattgtgaattttcaacattagaaaaataatcacaattttgtggaaatgattgaaaaactaattaataggttgcatttcacatgaacatagttaattagagaacaaaatgcatacactaggtgttagagcagtacaaaagttatagaagatgtcactgcttactgcatgagtatctttcttcacaatcccattccatcataaatattgcctaaacaattccactcaaccttgttgcttgttcaactttaattctttcataacttgatatgaaggtcaggacaattactgtagactagtttcttcatggttgcacgctgaataatcgtacacagatgcccttgctgtctctgaattctcaaacactgaacatatattgtagaacattttacacctattcctgtctgatctcttgctgtgtgtgtacggagcatgctgccgttcttcccaagactttgtgtctcaattggttatttttgacttgaagcgatccgtttcggtagtccctgaggcagctagcgtaagcctcttttgacttccaagcacacaagttacttgctgcctcagattcatcagcaagtcactagtacttttcggtatctagatgaagcatatatataaaccacaagaaaagcggctgcccatttgtgttctgatcatgaggagattcaggtggtttcttgaaagtatgtattgccattgcttccttttgcccttttgatttttcattatatgatgtagagagaaaattatatatcttatcgcatcgatgctttatttttcgttgtgaaagggatgtgaatctgtggttgcaagatactgaagaaagtaataaggtggttcttcaatcttcataggcttcagagttcagagttgagttaatgtttttgcaaacaaggtgtctgctgacagtttgacagtaaaaagatctgtatatatgggttcctgcggtaacggtagaagctctgaatatgatgatcctgcatcattagagaagatggaggaactggttttacctctgaaattgatgcccttacacaccaatggccggttgtatgacatgaggttgtcctcacctactgctacctgtgtgatcaatagttcatctggttcattcgacccgatctaccgagcttggacggtgagtttactaccatactagttgctgaatttttgtggtagcagtgtttgatcttgtaagagtggcgcaattttgcatttgttgttgttgcagaagaagtatccttcagctctaaatgcctttgaccacattgttgcctatggcaaagggaagaagatagcgctgtttttggactacgacggtacactgtcgccaattgtcgatgaacctgacaatgctatcatgtctgaccaggtggttttcattgcaatatctagctctgttgagtctcctcttgtcaagttgtattgactaaaacttctgcacaatatcgtgtatacagatgcgcgaggtggtgaggaatgctgccttgcatctacccactgcgattatcagtggaaggtctcgtgataaggtgcatatgttatttaaaaggtttcgacgtaatcattgtgctgatataatagtaaattgatatgttatctgtcattctgatactaactgtacctttttgtatcaattttaggtgtttgattttgttaaactaacagaattgtactatgctggtagccatggaatggacatcatgggtccagttggggaacatgattcagttactaaccataggagctccattaactcaaatagaaagcaggtgtggagagctctttacagttcagccaagcataatatttgtttccaaattttagtgcaaaatatgatacagtatttgttttttgaattgaattgatcttttcaaacggtttttagggcaagggagtgaagatcttccaggctggtactgaattcttaccaatgatcaatgaggtagaaaaatgtcaggctttacaactccatattttagctcagtgttcatcttaatgtaatggaatgcaggtttttagattgctcatcgataagacaaaggcaatcgacggtgtgaaaattgagaacaacaagttctgtgtatcggtgcactaccgcaatgttgaggagaaggtgaagatttatcttctcaaaatcatttcatgggggagaaactattcataaattatattttcaggcatatgggcaattccttgcttctgattaatctgactttcagaattggcaacttgtttctcaatgcacaaatgatgtcctaaaagtctaccctcgcctccgattgactcatggacgaaaagtaattatctgaaaactgaaattggctcctgaagatgactgtcagctgtatctgatcattgaaatgcaggttttggaaattcgtccagtgatagactggaacaaggggaaggctgtggagttcttgctggactccctagatctagctagctgtaaaaatgttctccctatttacatcggggatgattgtaccgacgaggatgcttttaaggtgcggaattctgctttcattcagaaggatttatgtctttcatggacaaaattcattttatggttcaattttcaggttcttcgattttaaggcgcataatctgctttcctgcagaaggattaatgctttttcatggacaaaattcattttgtggctcaattttcaggttcttcgtgacgataaaaggggtttcgggattctggtgtcatctgtaccaaaggattctcatgccctatattctctgattgatccatctgaggtaggttcatgatttgtgttccatgtaaggcactgtttgatgacagttctcataattgttttttatgttcattcatgatatatagagctatttcaattgcaggttatggaattcttgaaaagactagtgatgtggaagaacgaagaagcatcacataataagtagattataaatatatctgatgtttactctagggtagatttctgaattctgacaaagagaataagcagaagggcaacagaattaacttggacatagtggacagttgtacatcatatagttaatccattttcttagcctagcaagtggcaaaataaaagtaattgccatgttgtacaagaatgcgaagcattctgcacaagtccagttctttgaataatggtctcagttgtagaatggtgtaacttgttaatgaactgtgatataaatttttgggct</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0485000, RefSeq:Os07g0485000