Os07g0485400

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Revision as of 08:36, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0485400| Description = Asparaginyl-tRNA synthetase, class IIb family protein| Version = NM_001066192.2 GI:297607219 GeneID:4343250| Length ...")
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Gene Name

Os07g0485400

Description

Asparaginyl-tRNA synthetase, class IIb family protein

Version

NM_001066192.2 GI:297607219 GeneID:4343250

Length

6097 bp

Definition

Oryza sativa Japonica Group Os07g0485400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:18498783..18504879

Sequence Coding Region

18498783..18499145,18500148..18500216,18500501..18500605,18501034..18501083,18501100..18501226
,18501821..18501958,18502600..18502677,18502878..18502955,18503055..18503123
,18503457..18503540,18503632..18503718,18504101..18504196,18504278..18504352
,18504499..18504625,18504764..18504879

Expression

GEO Profiles:Os07g0485400

Genome Context

<gbrowseImage1> name=NC_008400:18498783..18504879 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:18498783..18504879 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggccgccgcggcgacccgcctcctccgccttgccccgcgccgcctccagggcccacccagggcgtgcccgttcgccgccctcccgctccacccgacgccggcccggctcgccgccaccacctcgaggtggcgccgcttctgcgccgccgcgcaggcctcggcgccgcccccgccaccggccgccacggcggcggcggcggcggcctcgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggaggggaggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacctgccgcgcccagaggaccgtcaccttcgtcgaggttaatgatggttcttgcttgtccaacatgcaatgtgtattgactcctgatacagaaggctacgaccagatagactctatcactactggggcctctgtgttagtggaaggagttatagcaagcagccaaggtggtaaacaaaaagtggagttgaaggtttcaaagatcagtgtggctgtagacaatattatcccaggtaagcacgcttctagtgcatttttttggtttcacttctttgtacagattggagaaagtgatccaacatcttttcctatacaaaagaagcgggcatcaagagaatttctgagaactgtagcccatctccgtcctcggacaaatacttttggcgcagtggcaagagtgagaaatgctttggcatacgcaacccacaaattttttcaagacaacggatttgtttgggtagcaagccctattatcacagcatcagactgtgaaggagcaggggagcagttttatgtgacaacattgatttcgaatagtgctgaaggtggttctctagtcaaggatattccttctactaaggatggaagggttgattggtcacaggatttcttctgcaaaccagcatttctgacagtgtctgggcaactgaatggtgaaacatacgctacagctctatcagatgtttacacttttggtccaacatttagagctgaaaattcaaacacctcaagacatttggctgaattttgggtgaagtatgttctagagaactgcaaagaagatatggatttctttaatacatggattgaaaaagggatcatcgatagattaaatgacgtagttgagaaaaactttgttcacttgtcatattctgatgctattgagctacttgttgggtccaagaagaaatttgagttcccggtcaaatggggattggatctgcaaagtgagcatgaaagatatatcacagaagttgcttttggtgggcgcccggtgataattagagattatccaaaggaaatcaaagctttctatatgcgagagaatgatgatggtaaaacagttgctgcaatggatctattggttcctcgggttggtgaactcattggtggaagccaaagggaagaacgtcttgattaccttgaagctcgcttggatgagttaaatcttaacaaagatagctactggtggtacttagatctacgtcgatatggatcagttcctcatgctggttttggtcttggatttgaaagactagtacagtttgcaactggaatggacaacattagagacaccattccatttccccgggttccaggctctgcagagttttag</cdnaseq>

Protein Sequence

<aaseq>MAAAAATRLLRLAPRRLQGPPRACPFAALPLHPTPARLAATTSR WRRFCAAAQASAPPPPPAATAAAAAASGEAVGEFRRRTRVADVKGGEDEGAAWVGKQL AVRGWVRTCRAQRTVTFVEVNDGSCLSNMQCVLTPDTEGYDQIDSITTGASVLVEGVI ASSQGGKQKVELKVSKISVAVDNIIPGKHASSAFFWFHFFVQIGESDPTSFPIQKKRA SREFLRTVAHLRPRTNTFGAVARVRNALAYATHKFFQDNGFVWVASPIITASDCEGAG EQFYVTTLISNSAEGGSLVKDIPSTKDGRVDWSQDFFCKPAFLTVSGQLNGETYATAL SDVYTFGPTFRAENSNTSRHLAEFWVKYVLENCKEDMDFFNTWIEKGIIDRLNDVVEK NFVHLSYSDAIELLVGSKKKFEFPVKWGLDLQSEHERYITEVAFGGRPVIIRDYPKEI KAFYMRENDDGKTVAAMDLLVPRVGELIGGSQREERLDYLEARLDELNLNKDSYWWYL DLRRYGSVPHAGFGLGFERLVQFATGMDNIRDTIPFPRVPGSAEF</aaseq>

Gene Sequence

<dnaseqindica>1..363#1366..1434#1719..1823#2252..2301#2318..2444#3039..3176#3818..3895#4096..4173#4273..4341#4675..4758#4850..4936#5319..5414#5496..5570#5717..5843#5982..6097#atggcggccgccgcggcgacccgcctcctccgccttgccccgcgccgcctccagggcccacccagggcgtgcccgttcgccgccctcccgctccacccgacgccggcccggctcgccgccaccacctcgaggtggcgccgcttctgcgccgccgcgcaggcctcggcgccgcccccgccaccggccgccacggcggcggcggcggcggcctcgggggaggccgtgggggagttcaggagacggacgcgggtggcggatgtcaagggaggggaggacgagggcgccgcgtgggttggaaagcagctcgccgtgcgcgggtgggtgcgcacctgccgcgcccagaggaccgtcaccttcgtcgaggtgaggggaagctttgcgtttgcgctctcgcatccctttctgtttgaagcgtgaattcgtgatggtggcgctaatggttagcggtcttgtgtttgatgaaatgaacggtgcgaatgattagtttgcgcacattgcataaaattgcattgtggactaggaattgggagtgctggaaaagatgctttccttcagtgcactattcacattgcttccccaatgtcgttgatcattttacatttcatgaaacatttcgatccatggttatgcgattgtactaaactagctttcattgtactacttttgtacaaattacgataacaagactgaacttctggatagatattacagaaatcatttttgtgactgtttgataagtcgtccttcttttgatgagaattgcagcctgtttgacttgcataccagcagttctgtggagtgtgccattagttgtttggttgatgcctaaccttgccataactaagtttaggctagttgtggcatggtggcacaaatgtggcttagaaatagttggccacaaatgtggcatgcttagctctaaatttgagagcatgacatgtgggtcccaaagtttaaaaagtgtggcataacacaattgcggtagcgaaccaaacacatgcctagaaaattgtggcgtggcaaagtgtggcaaccaaccaaacagcatgttacttgcctacttttctctaaggcctacttttgtgttattaactgctttgaagttagaaatcaggacaatttctctaaggcctacttttgtgttagtaatcagacttcagacagtctttcatggaccagcaatactaatctagtaatctgcatgccatgagtgcacagtataatgaatcagagtatctcatattctgaatgcataggatgttaatactgtcatctggagactttaaagttccctgaaataatggtaatgactattggcttttactttaaatctctaacgcgtcctaaaatttaaatttatttcaggttaatgatggttcttgcttgtccaacatgcaatgtgtattgactcctgatacagaaggctacgaccaggtaagcaatcattcagggaatcagggtacaactagatagtagaaacaatacatgttaattttgttttgttattctggtcaataaaaatagtttgatcaatccaatggttatcttgtgaacacagaaaataaaactctgataattgtgacatggcaccaacaatgacaccagcgttgtctagttatgtctcaattccttttattttccttgctatagttgcagccaatgtgttcttgtggctatagtacattttactggtcaatattttcattggtggatgtcagatagactctatcactactggggcctctgtgttagtggaaggagttatagcaagcagccaaggtggtaaacaaaaagtggagttgaaggtttcaaagatcagtgtggtaatggtttcattctgcctatagtttcctccttttcctttttatttccttttttctttgcgtgcctcacaaatctaaatgaaatgtggacagattctggagttaactagctatttccagatatcaaaataaaatttctataatttattgatataggaaaatacttgtggagtagttaaggtatctctttttgtatgctactatgctagtcttgtactcttgttaaagacagatatgagcgttaaccgaacactcctatatcgaataagttatttgatgatccctaacgtggtaacacacaatgcacaaaaaaattcgcccctatgctttctttttatataaagaaatttctgatggcatgacaaaaggatagacctatagactgttaatgttgattgagaatctgcagttgcattttgctttatcaggctgtagacaatattatcccaggtaagcacgcttctagtgcatttttttggtgtgttctgatgtaggtttcacttctttgtacagattggagaaagtgatccaacatcttttcctatacaaaagaagcgggcatcaagagaatttctgagaactgtagcccatctccgtcctcggacaaatacttttggcgcagtatgattttactcattgctagttcttttctgatactttttttttgctcagaagctactaaatctgtagacttgtgttatgccttggaaatgatcatgccctttctgtccacaacttttctacaaaatgctcatcattatccttttctagatgcgttgttaattccctaatttagctcataaattagcatacaagttgtgacaaggtttgctatgcaaatattacaaaataagtggcatgtttatagatgacattctgtccaatccaaccttggatatggatctgccaatgtggtgatgaaatacatacattatgtagaattgcaatggactatgatcaatgcagccatggacaggaaatgtgtgtgattctcatattggcaagaatccaacaaactgctgatatagcatcatattctgcacatcaaaatagtgcaaacgttggtagttttatgtgttgtagtaagatgaacttttgcgttagaaagtgcctttttcttatgatgaagaagctggctggtgtccaacatttttcatctctctagttatgtaacttattctatggaatttttactgtactgttgtacttatttaggtggcaagagtgagaaatgctttggcatacgcaacccacaaattttttcaagacaacggatttgtttgggtagcaagccctattatcacagcatcagactgtgaaggagcaggggagcagttttatgtgacaacattggttagtatttcgtcaataagattctatagagtagtgtatagacagattgcttggtatgtaacaaatttactgtttctgggggaatgttctgctcataatgtcatttcctgtactaacatgctgttcatattgcaacacacattttggtcttctctatttttacctcaaaaccattagtgtactttttgctccagttcagaaattaagtgctctttttctttttttcctcacaaaaaaaaaagaaattaagtgctccgcatcatcctgtactaatatgcttgtccaaatcagaaactacttgaagttttcttttagttttgtacttctgtgtctgtttagaacagcttcactatgttattaggtgcactgctaaatcagtttgaattttccatctacagatttacttatttaaaaatcattaaagttctgctataacagttgattaagtttgtcatgattggtttttatgtatctgtctatatttaaagatatttatggctctgagtatcacttattatctttttatgtttacaatatattccatggaatgatcagagctctccattttggtttctaattgccataacccctttcattatgtttctatttaatgctgttagatttttttccctgtcatacagatttcgaatagtgctgaaggtggttctctagtcaaggatattccttctactaaggatggaagggttgattggtcacaggtaaaacttcagaatgaatgcttatgcaaccttttgttgttaaaagtcaaatgtttcttccccattttaagcaaatttacccgtataatttttgtgatatgctctgttatactgcatgccaacagctgttcaagtaatccaaatgtttcaatgtctttgtggttttcgtaacaatggttatttgcttgtatctatgctaggatttcttctgcaaaccagcatttctgacagtgtctgggcaactgaatggtgaaacatacgctacagctctatcagatgtaaattttcatttgccagattcatttgaaataattttctgtcgtatttgatatagctgtaaccagtgtttctgtttcctgacattgcttattctacaggtttacacttttggtccaacatttagagctgaaaattcaaacacctcaagacatttggctgaattttgggtatcgcaatattcttttacatttatgtttctttcagaattttaaattccagaactcttaatttacaggttttttttttgttggtttgtgttccggggaagatgattgagcctgaacttgcctttgcggatctaaatgatgacatggcatgtgcgagttcatatctccagtatgtagtaggtgcccttttttgcttggtgctcaactctgttagtgattatttcattcagacaatattttatggatgcttcacagttactgacttgctgaattgtggggaagatgtctctatatgcttacaccatttacctagttactgcttgtttgatacaggtgaagtatgttctagagaactgcaaagaagatatggatttctttaatacatggattgaaaaagggatcatcgatagattaaatgtattcctctcagatctttcttctgttgctgcactatggattgttttggtcaagtttcatgctgaaatattgaaaatgtttcttcttgcaggacgtagttgagaaaaactttgttcacttgtcatattctgatgctattgagctacttgttgggtccaagaagaaatttgagttcccggtaacacacaaattcaattatttatattctcatattctcatttggactacattacaattttgttccttgtgttctatttaaagtcctaaccaggaaacgaaaattgactgcatatctgtctttggtgttggatggcatgtcaacatgcttgttgatagaacaaatgcttatactttttgtagttactgataatttgatttgtttaattttaattagtgtgcacaaaattacctgtttgttttctacttctacatactcagttctgtgtactgtggatccttcaacaactgtccctgagtaggcaaatgggtaaatgcaagaatgcgagtgattattttacaaaaataatgcctctttcttttgtcttttgaaccatccataggtcaaatggggattggatctgcaaagtgagcatgaaagatatatcacagaagttgcttttggtgggcgcccggtgataattagagattatccaaaggtttatatcgtcactggtctgtgattaactagttcattaacaaagttgtcatacttcaaaatttccttttattttgcttaggaaatcaaagctttctatatgcgagagaatgatgatggtaaaacagttgctgcaatggatctattggttcctcgggtaagcatatacaccaatagctgacatctcaaacaatacatcatatgtaaaattccgagtatataaatagacaaaatggaggcaaagcttctagcatatttgaattagttgatttgtaatataactcttttcctgttcaatttcaggttggtgaactcattggtggaagccaaagggaagaacgtcttgattaccttgaagctcgcttggatgagttaaatcttaacaaagatagctactggtggtacttagatctacgtcgatatggatcaggttaaatttcaaatatcaaaatgagctggataatgcaatttctccttttacattacagatcatttaaaatttgttattcggtagcatgatttcccccctgtcatgatccataacgaatttccaccttttctgtaacagttcctcatgctggttttggtcttggatttgaaagactagtacagtttgcaactggaatggacaacattagagacaccattccatttccccgggttccaggctctgcagagttttag</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0485400, RefSeq:Os07g0485400