BGIOSGA011343

From RiceWiki
Revision as of 15:39, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA011343

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA011343, complete gene.

LocusTag

OSJNBA0050H14.2

Ensembl Transcript ID

BGIOSGA011343-TA

Ensembl Protein ID

BGIOSGA011343-PA

Length

6565

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:4526557..4533121

Sequence Coding Region

4532467..4533121,4532221..4532298),complement(4531503..4531642,4531376..4531429),complement(4531041..4531127
,4530665..4530829),complement(4530063..4530173,4529535..4529603),complement(4529326..4529435
,4529111..4529216),complement(4528744..4528810,4528444..4528523),complement(4527896..4528347
,4527391..4527565),complement(4527032..4527163,4526797..4526947),complement(4526557..4526675

Genome Context

<gbrowseImage1> name=IndicaChromosome03:4526557..4533121 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:4526557..4533121 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCGCCACCGCTAGCCGTTCCCCCCTCCATGTCACCGCTCCGGTTCGCGGCGTTAACCCCCTGTTGCTCCGGCGTCTCCGGTTGGGTCGAGGTGGCGGTTGTGGTAAGGCCTCGACTGCGCAGCGATTCTGCCTCGTCGTCCTCCCCCGCGGCCCAGCGGTGGCCACCCCCCGCTCCACGGCCGATCCCTCCGCCTCGGCCTCGAGCGCGGTCGACGCGGCCGCGGCGGCGGGAGAAGGAGAGGGGGCCAGTGATGCTGCCACCGTGCTGCTCGACGTGAGCGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGACGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAGGTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGGAGTGCGGGTTCCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTGGAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTTCGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCTCGGCATCCACGTCGGCCATGGAACGTTTTTGGATCTGTTGCATAATTCGTATGTGAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGGCTTTTTATCCTTTTCTCAAAATGTGTTCAATGTAACACCAGATATACTTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGGATCTGCAGCGGCATTTGCTATCAGTTCAGTGTCCTTGCTGAACCCTGAACTGGAATGGAATTCAACCTTTTTTGATGAACCGGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATTCAGATGCAATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGACTTCATATTGGTCCTTCCAGGAGAAACAATCCCTGTAGATGGAAATGTCCTTGGAGGATCAAGTTTTGTTGACGAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTCTAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGGATGTACTTGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGGTGCTAAACGGGGACTACTTATTAGAGGGGGTGATGTTTTGGAGCGTTTAGCTGGAATAGATGCCATTGTACTTGATAAGACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATCAGGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGCAAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCAACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGGCACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGATCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATCAATTGCTTATGTTGGCCGTGAGGGAGAAGGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGGCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGAAGCAGTTGAAAGCATTGGGAGAACTGTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAA</cdnaseq>

Protein Sequence

<aaseq>MAATASRSPLHVTAPVRGVNPLLLRRLRLGRGGGCGKASTAQRFCLVVLPRGPAVATPRSTADPSASASSAVDAAAAAGEGEGASDAATVLLDVSGMMCGGCAARVRTILAADERVETAAVNLLAESAAVRLRSPEPAAGKELAARLTECGFPSVARRGGAASGASDSARKWREMAARKAELLTRSRGRVAFAWTLVALCCGSHATHFLHSLGIHVGHGTFLDLLHNSYVKCGIAIAALFGPGRGFLSFSQNVFNVTPDILFDGLRAFKQGSPNMNSLVGFGSAAAFAISSVSLLNPELEWNSTFFDEPVMLLGFVLLGRSLEESARLKASSDMNELVSLLSPQSRLVVTSSSDDPSSDGVLNSDAITVEVPVDDVRVGDFILVLPGETIPVDGNVLGGSSFVDESMLTGESLPVPKEKGFPVFAGTVNWDGPLKIKATTTGPSSTIAKIVRMVEDAQAREAPVQRLADSIAGPFVYTVMTLSAATFSFWYYIGTHIFPEVLLNDISGPDGDSLLLSLKLAVDVLVVSCPCALGLATPTAILIGTSLGAKRGLLIRGGDVLERLAGIDAIVLDKTGTLTKGRPVVTSIASLAYQEAEILRLAAAVEKTALHPIANAIMEEAELLKLDIPATSGQLTEPGFGCLAEVDGCLVAVGTLDWVHNRFETKASSTELTDLGNHLEFVSSSEASSNHSKSIAYVGREGEGIIGAIAVSDVLRDDAKATVDRLQQEEILTFLLSGDRKEAVESIGRTVGIRSENIKSSLTPHEKAGIITALQGEGRRVAMVGDGINDAPSLAAADVGVAMRTNSKESAASDAASVVLLGNRLSQVMDALSLSKATMAKVHQNLAWAVAYNIVAIPIAAGVLLPQFDFAMTPSLSGGLMALSSIFVVSNSLLLQLHGSFQSTEKQREDLNSRLN</aaseq>

Gene Sequence

<dnaseqindica>1..655#824..901#1480..1619#1693..1746#1995..2081#2293..2457#2949..3059#3519..3587#3687..3796#3906..4011#4312..4378#4599..4678#4775..5226#5557..5731#5959..6090#6175..6325#6447..6565#ATGGCCGCCACCGCTAGCCGTTCCCCCCTCCATGTCACCGCTCCGGTTCGCGGCGTTAACCCCCTGTTGCTCCGGCGTCTCCGGTTGGGTCGAGGTGGCGGTTGTGGTAAGGCCTCGACTGCGCAGCGATTCTGCCTCGTCGTCCTCCCCCGCGGCCCAGCGGTGGCCACCCCCCGCTCCACGGCCGATCCCTCCGCCTCGGCCTCGAGCGCGGTCGACGCGGCCGCGGCGGCGGGAGAAGGAGAGGGGGCCAGTGATGCTGCCACCGTGCTGCTCGACGTGAGCGGCATGATGTGCGGTGGCTGCGCGGCGCGGGTGCGGACCATCCTGGCCGCGGACGAGCGGGTGGAGACCGCGGCGGTCAACCTCCTCGCGGAGTCGGCGGCCGTGCGGCTGAGGTCGCCGGAGCCGGCCGCCGGGAAGGAGCTGGCGGCGAGGCTGACGGAGTGCGGGTTCCCCTCGGTGGCGCGGCGAGGGGGCGCGGCCTCGGGGGCTAGCGACAGCGCTCGGAAGTGGAGGGAGATGGCGGCCAGGAAGGCGGAGCTCCTCACGCGGAGCCGTGGGCGCGTCGCCTTCGCGTGGACGCTCGTTGCGCTCTGCTGCGGCTCGCACGCAACCCATTTCCTACACTCGCTCGGCATCCACGTCGGCCATGGTGAGTTCAAACCACGGGAGCGTGATCACAGGTTGTGTGGCGTTTGTGCAATAGATGAATGGACATGAATGAAGTTTAGTGAAAGTCTAAATTGGCCACTGATGCACATGCTATATTGAACTGTTTTTCCACTAGGATCACTATCTGATCGGTTTATGCATGGTGCAGGAACGTTTTTGGATCTGTTGCATAATTCGTATGTGAAATGTGGCATTGCAATAGCGGCATTGTTTGGGCCTGGAAGAGGTATAGTATAGTAATGTACTGTTTTTTTTTGTATAGGCTTCTACACAGTTTTTTGGGTATCAAACCAGATAGGGACTAGCAATAACTTGACCAAATTAACTTAGTTCCTAAGAACAATATAATTCTCTAAACAATGAAAAATAGACAACTCAATAGCAGCAAGCAGGTCACTAGGTTGTCTGACACGAGATGCTGAAAACTCATACCATTACATGTAGTCATCCTTGATATGATCATTGAATTCTCTGAGATGGCAGTCATGGCTAGATAAAATTTGGTAGCCTTACTTGATGGGGGAGATTGCACATTCCTTCTCTGGTAAACACTCCTTTGTTTTTTTATATATTTCTAATGTATGTACACAACAAGGATTTCCTTATTGTTTGCCCTGAAAAATACTTCATCACTTCGATTCACGGGCTTTTGTTTGGGTTGGTGGGTGCCTGGGTGGGTAGTAAAGGAGACATATTCTTAAAGCCTCCTAAGAAACAACAGAATGGCAGATGATATGAAGAACTAGATGTGTTGTACATTACTCTGGAACATTTTCAGCATGACCGTGCAATGTGTATCTTCAGGCTTTTTATCCTTTTCTCAAAATGTGTTCAATGTAACACCAGATATACTTTTTGATGGTCTTCGAGCATTCAAGCAAGGATCCCCCAACATGAACTCTCTTGTAGGGTTTGGATCTGCAGCGGCATTTGCTATCAGTTCAGTAAGTGCATTTGCAGTGCCCAAATCGTCTGTCAGTCATACAAGAATACTGATGCAGCTTTTCTTTTATGCAGGTGTCCTTGCTGAACCCTGAACTGGAATGGAATTCAACCTTTTTTGATGAACCGGTGAGTGATCTTCCATGCACGCACGTTTCATCTTCTTGTTGACACTCCTGTCGTTTGTCAATGTTGTCTGCCTTTTGTCTATGTTGTGGTGTATTGTTAATATGGCATCCCGTTGTGTTGTTGAATTGTTCAAATATAAACCTAATTACTTCCTACCGCATTACTTGAACTGATTTGGTGATTGATGAATTAACAGTTGAATATGTTTTGCATAATAATGTTGAAGAAACTTTTCTTGTAGCATGCAGGTCATGCTTCTCGGATTTGTGCTTCTTGGACGATCTCTTGAAGAAAGTGCCAGGCTTAAGGCTTCTAGCGATATGAATGAGCTCGTTGTAAGTATACACCTTATTCCTTTACAGAGACACTTATTTTTCATTTGTAGAATAAAAGTAAGTAAATATGTATTCCCTCAAACACTATTGGAGAAACTTTGCAGTGGTAGTTGATGGTAGTGAAGTAATTTATCTGCAGTTCTGCATGTTCTTCATTATAAGACTGAATTTGTTGGCAAGTGGCAACTACTTATGCCTTATTCTGTTGCAGTCACTCTTATCACCTCAGTCAAGATTGGTCGTTACTTCCTCAAGTGACGATCCATCCTCAGATGGTGTTTTGAATTCAGATGCAATCACTGTTGAGGTTCCTGTTGATGATGTTCGTGTTGGAGACTTCATATTGGTCCTTCCAGGAGAAACAATCCCTGTAGATGTAAGGAGCCACACTGGTTTTATGTTATAGTACTTTCTTTGAATATGCATAAATCCTAAGTTTGACTGACCCCTTTTTTGTTACTATTAATTTCATATAGTGAAGTAATCTTACAAATGAATTGCGTGTGCTCAGATCATTTGAATATATCTCCTTTTCCCTCTTCTTTATTAGTTATTTTTAGACAATTTATCAGCAATGCCTATCTGTCTTCAATGAATGCACCATAGATTGCTTACTCTCTCTCTCTTTCTCAAACTTGGATATCCTCTGTTATTTGTAAAATTTGTATGTCCACTCATGGTTTTGATCATGTATTTTTATAGTACTATACCCTTTAAGGTTCATATCATGATTTATTTGTAGAGGTGAAAATGCTAGAAGGCTGCTCTAGTTCACTGATGGTTGGACACACTTGTCTTTCTTCTGTTGCATTTTCTTACTACATCAGTTTGTTCTTGCACGTAATTATTTGACATATCTTCTGTTAGGGAAATGTCCTTGGAGGATCAAGTTTTGTTGACGAATCAATGCTTACTGGGGAATCGTTGCCAGTCCCCAAGGAAAAAGGGTTTCCTGTATTTGCTGGAACTGTAAACTGGGTATGTGCATACTTTTCTGCCAGGAATTCTTACTCCACATTCTATAATTCCATTAGCTTGTGTCAGCTCTTAAGCTTTACTTTCATTTCAAAAACTGTATTCTTAGTTAAAATGCTGATCTCTTTGTCATATGTATATTTTTCATCCATGGTCATGTTGCCAATGCAAAAGCTATTGTGAGTTGACCAAAAAAATAATAGGCTATTCACTCTCTTTTCCATGCTTTGATTGATTGACGAAGCTATTTTTAACTAAACATGCTTCAGTTAGATAAGAGGCACAAGGCCCTGCTTTTAGTACAAAGCAAAAGAACTAAACATGTTTCAGTGAAATTATTAGATTGTCCATTTTACGCTTGTTTAATTTTAACTCCCTGCCCCTCTCTCTCATAAAGTACACAGGCTCATGTGAGAATTCTTTGTTCAACTTATTAACAATTAATTATTTGACTTGTTGAAGGATGGTCCTTTAAAGATCAAAGCGACAACTACTGGACCATCATCAACAATTGCTAAGATTGTCCGAATGGTAGGTATACTCTTTTCTCTTGATAACAAAGAAACTAAAAGAAGTTTTTTTTTCTCGACCAAAAGAAGTTTTTATAATACTTGTATTGTTCTTGAACAGGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGGTATGCTCCCATTCTCCTTTTTGTTGTTGTTTTTCCCTTCCAAAAAGAATACACATGAAATTTACTGGGGCTACATTAACGTTGCTTCGGCAACCTTCTCTATTCCAAGGTATTACATTGGCACCCACATCTTTCCAGAGGTCCTTCTAAATGATATTTCTGGTCCAGACGGGGATTCATTACTATTGAGCTTGAAGCTCGCTGTGGATGTACTTGTAAGTAGTCCTGGTACTGTTTTCTGAAAGCTCAGTGTTTCACTCTAATGATCTGAAAACTATTGTTAAAAAAATGTTATCAAATAGACTAATTTTACAAAGTCAGGTCACAGTGCACAAACTAACTAATCATCATTGAAATCCTACATGATTGATGTACATGCCAAACATCTTGAATTCTCAATACGATACCTGTTCGATGGACGGTGGTGGTTGAAAAGTTGTGGGCTATGAAGGGCACTATTTGCATATGCCTGCATTTATGATTTTTGGGCTGATCTCATAATGTTCACCCTGCAGGTTGTTTCCTGTCCTTGTGCACTCGGATTAGCTACCCCTACAGCTATTTTGATAGGAACTTCACTGGGTAACTTTCTATGTCATAATGTTTGGGTTCGTTTGTTCCTGATATTTGGCTGATACAATGGGGTCGGAGATGCTCATACATCATAAATACGATAAAGAGGCCCTTGCATTACTAAAGTCAATTCAGCATATTGACTGTGCTACTTTGTTGCGATCCTTCTCTGATCTTTGCTTTTTATGAGCTGCTAACCCTCATGGAACTACCTTTTATCTTAAACTAGGTGCTAAACGGGGACTACTTATTAGAGGGGGTGATGTTTTGGAGCGTTTAGCTGGAATAGATGCCATTGTACTTGATAAGGTACACACTACATACATCATTTAATTTTTCATGCTAAACTAGTCTCCTCAAAATTAAGTATTGTGTTACAGTTGGTATTTGTATTGTGATTCTTAGACAGGGACGCTAACAAAGGGAAGACCAGTAGTTACTTCTATAGCTTCTTTAGCATATCAGGAGGCGGAGATTCTTCGTCTCGCCGCTGCAGTGGAGAAAACAGCATTGCATCCTATCGCAAATGCTATAATGGAGGAGGCCGAACTTCTCAAACTAGATATCCCAGCCACAAGTGGTCAACTTACAGAGCCTGGTTTTGGCTGTTTGGCAGAAGTAGATGGGTGCTTGGTTGCAGTAGGCACTTTGGACTGGGTCCACAATCGATTTGAGACCAAGGCATCGTCAACTGAACTGACAGATCTCGGAAATCATCTAGAGTTTGTGTCTTCCAGTGAGGCATCATCTAATCACTCAAAATCAATTGCTTATGTTGGCCGTGAGGGAGAAGGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGGTATTTACTGCAGATACCATCTGTCTGTATATTTATCGAGTGTCTCCTGCTTTATCATAATTCAGTCAAACATATCTTCCTAACGGGACATATTCAGAATTCATAGTTTTCTCTTATACTTTTGGACATTTGCTATGAATGCTGCATCTACTCTCTATATGACATGCAACCCTTTTGAGTGATATCCACAAAAAAAAAGATGTTGCATCCTAAAATCTCGCATATTGCAAATGTTTTTTTTTCCTATTTTTATGCAAATGTTCATCTATTACTAATTATGTTGTCTGTATAATTTAAATACTGTATTTTCCCTTTCTGATTAATTAACAGGCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGAAGCAGTTGAAAGCATTGGGAGAACTGTAGGGATCAGAAGTGAAAACATAAAGTCATCCTTAACTCCACATGAAAAGGCAGGCATTATAACTGCATTGCAAGGAGAGGGACGTCGGGTTGCAATGGTAATGCTCTGTGATGTGCTTTTATCTATTATTGACAGCACGTACAGTTGTTGCTAGTCTATGGCATACTGAAATTGCCTGCACTAAAATTATTCCGCGTCCTGACTTTCGGAGAGTGTTTAAATGTTGAGCATAGTAAACAAAAATTAAAGTTTGACTAACTCAAAGTTTTAGATTGGATGAAACTACTCTGTATTATTGTCTTAGTGGAATTTGCTGTTGCATAGGTTGGGGATGGAATAAATGATGCACCATCTTTAGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGGTAGGATTCTGTTCTCTATGATATTGTAACTGCATAGTTCAAGTGGCATTCGTGCTAATAAACAAGAACCACCCTACGGCTTAGGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAAAATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGGTACAATATATCGCTATTGTATGCATCTCCACCATTTCAGTATCCGTATGGTTTGTTTGCATCCCACCATTATCTTAAAATTATGAGCTTTAATATTGTCTTTGTTGATGGTATCATGTAGGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCTACAACTACATGGATCATTTCAGAGTACGGAAAAACAACGGGAAGATCTGAACTCCAGGCTGAATTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA011343