BGIOSGA011640

From RiceWiki
Revision as of 15:40, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA011640

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA011640, complete gene.

LocusTag

OsI_09597

Ensembl Transcript ID

BGIOSGA011640-TA

Ensembl Protein ID

BGIOSGA011640-PA

Length

5382

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:217602..222983

Sequence Coding Region

217602..220086,220418..220491,221225..221311,221383..221559,221647..221769
,221848..221948,222027..222079,222173..222358,222766..222983

Genome Context

<gbrowseImage1> name=IndicaChromosome03:217602..222983 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:217602..222983 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGAACATGTCAATGTGCGCCGGCTCACTCTTCAACCTGGCCAACGGCCTCCTCATCAAGATGATCCGCGCCTACCCGTCACCTCCCGTCGTCCTCGCCTCCATCCATCGCGCGCTATCGGATTCTGGCCACCGTTCGCCGGCGGTGCTCGACGTCCTCGTGGATACCTACAAGAAGTCTGGGAGGGTGCAGGACGCCGCGGAGGTCGTCCTGATGATGAGAGATCGGGGCTTGGCTCCCAGCATTCGGTGCTGCAACGCGCTGTTGAAGGATCTGCTGCGCGCGGACGCCATGGCTCTGCTTTGGAAGGTGCGAGAGTTCATGGTTGGCGCTGGGATTTCCCCGGATGTGTATACGTACTCGACTCTGATCGAAGCCTACTGCAAGGTCCGGGAATTTGATACTGCCAAGAAGGTGCTTGTGGAAATGCGTGAGAGGGGGTGCGGCCTGAACACCGTAACCTACAATGTGCTGATTGCTGGGTTATGCAGGTCTGGGGCTGTCGAAGAGGCGTTTGGGTTCAAGAAGGACATGGAGGATTATGGACTAGTTCCTGACGGGTTTACCTATGGCGCACTCATTAATGGACTGTGCAAGAGCCGTAGGTCAAATGAGGCGAAGGCATTGTTGGACGAGATGTCTTGTGCTGAGCTAAAGCCTAATGTCGTAGTTTATGCCAATCTGATTGATGGGTTTATGAGGGAGGGCAATGCAGATGAGGCGTTTAAGATGATAAAGGAGATGGTTGCTGCTGGTGTGCAGCCAAACAAAATTACCTATGACAATCTTGTTCGGGGACTATGTAAGATGGGGCAGATGGACAGGGCTTCTCTACTTTTGAAGCAAATGGTCAGAGATAGCCATAGGCCTGATACCATCACGTACAATCTCATTATTGAAGGACATTTCCGTCATCATAACAAAAAGGATGCTTTTCGGCTTCTTAGTGAAATGGAGAATGCTGGTATTTCCCCTAATGTATATACTTATAGCATAATGATTCATGGGCTATGCCAAAGTGGTGAACCAGAAAAGGCAAGTGATCTCCTTGAGGAAATGACTACAAAAGGATTGAAGCCTAATGCATTTGTTTATGCGCCTCTTATCTCAGGGTACTGTAGAGAAGGTAATGTTTCATTGGCATGTGAAATTTTTGATAAGATGACAAAGGTGAATGTACTCCCTGATTTGTACTGCTACAATTCTCTTATATTTGGACTATCTAAGGTGGGAAGGGTGGAGGAATCTACAAAGTACTTTGCTCAGATGCAGGAGAGAGGATTGCTGCCAAATGAATTCACATACAGTGGCCTCATTCATGGGTATCTAAAGAATGGTGATCTAGAAAGTGCTGAACAGTTAGTGCAGCGGATGCTTGACACTGGACTAAAACCAAATGATGTTATCTACATTGATCTCCTAGAAAGCTACTTTAAGTCAGATGATATTGAAAAGGTGTCCTCTACTTTCAAGTCCATGTTAGACCAGGGAGTTATGCTTGACAACCGTATCTATGGAATCTTGATTCATAATCTGTCCAGTTCTGGAAATATGGAAGCAGCATTTAGGGTTCTTTCAGAGATTGAGAAGAATGGATCTGTTCCGGATGTGCATGTGTACAGCTCGTTGATATCAGGTCTTTGCAAGACAGCTGACAGGGAAAAAGCTTTTGGTATTCTTGATGAAATGTCTAAGAAGGGAGTAGATCCTAATATTGTATGCTATAATGCCCTAATTGATGGGCTGTGCAAGTCTGGTGATATTTCTTATGCCCGCAATGTCTTCAATAGCATATTAGCTAAGGGATTAGTGCCAAACTGTGTGACATACACAAGTTTGATTGATGGAAGCTGCAAAGTTGGTGACATCAGCAATGCATTCTATCTTTATAATGAAATGCTAGCAACAGGTATAACACCAGATGCTTTTGTCTATAGTGTACTTACCACTGGCTGCTCTAGTGCTGGTGACCTTGAGCAGGCAATGTTTCTGATTGAGGAAATGTTTCTTAGGGGACATGCAAGTATTTCTTCTTTCAATAATTTAGTTGATGGTTTCTGCAAACGTGGAAAGATGCAGGAAACTTTGAAGTTGTTGCATGTGATAATGGGCAGGGGCCTAGTACCTAATGCCCTGACTATTGAAAACATCATCAGTGGACTTAGTGAGGCTGGAAAACTCAGTGAAGTGCACACAATTTTTGTTGAGTTGCAGCAGAAAACTTCAGAAAGCGCTGCCCGCCACTTTTCCTCATTGTTTATGGACATGATAAATCAAGGAAAAATTCCTCTTGATGTGGTTGATGACATGATTCGAGATCATTGTAAAGAAGGAAATCTGGACAAGGCTTTAATGCTGCGAGATGTTATTGTTGCGAAAAGTGCACCAATGGGCTGCTCGTCTTATCTTGCTATAGTGGACAATCTATGCCGGAAGGGAAAATTAAGTGAAGCGTTGAATTTGCTGAAAGAAATGGACAAGAGAGGGAACCTTCAGCCAACTTTGGTTGCTCTGCTTGGCATCTTCTGGTTCAGGAGGCATCATCATATATTGAACAAGTCCGTGACGAAGATGGCAACCCGTTTCGGAAAAGACAGCAGCCGCTGCCGCTCTCTTGGGCTCTCCTATTCATCATTGTCCATGGCTCTTGGTGGCTTGTACATATGGACGCATACGTACAGTCTTATGAAGAAGAAGAGAGGTCAAATGTATCACCAGCCTAACAGCATTCAGGGCCTGGACGACAGCAATGAAGAACATCATGCTAAGAAATTCAAAGCAAATGGTGAAGCTGCTTGCGCCGATGAGGAGGCAACTCTTCCGGAAGCTCCATTGCTGTCTGGAGAGAGCGAGATTGCTAAGAAAGGCTCGTGGACAACAACAAACTTGAAGGACACCATCCACCATGTTGTCGAGGAGCTGATGGCACCACCAACTCTATCTGCGATACTTGGATTTGTTTTTGGGCTAGTTCCATGGTTGAAATCTCTTGTCATCGGTGATGGCGCCCCTCTCAGAGTCATCCAGGACTCCATCCAACTGATGGGAAATGGCACGATTCCTTGCGTCACCCTCATCCTTGGTGGCAATCTGATAAAAGGGCTAAGGAAGTTGGAGTTCAAGCATACGGTGATCATTGCGATCGTCTGCATCCGCTACGTGATCCTTCCTCTAGTGGGGATTGCAGTAGTTCATGGTGCATACTGGGTCGGATTCTTGCCACACGACCCGCTGTACCGCTACGTGCTGATGATGCAGTTCGCGCTGCCACCTGCAATGACTATTGGAACCATGGCTCAACTGTTTGATGTTGCCCAGGAGGAATGCTCAGTGATATTTCTGTGGACTTACCTGGTTTCTTCCATTTCTCTCACCACCTGGTCCATGATATTCATGTCCATCCCGTCTTTAGGTCAAAGTGCAATGATTTCAGCATTTCAGCTAACTCAAAGGGAGGAGGTTGAAGACAATAATACGCCTCTAGAAAAGAGTCGATCCAACTGA</cdnaseq>

Protein Sequence

<aaseq>MNMSMCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLVALLGIFWFRRHHHILNKSVTKMATRFGKDSSRCRSLGLSYSSLSMALGGLYIWTHTYSLMKKKRGQMYHQPNSIQGLDDSNEEHHAKKFKANGEAACADEEATLPEAPLLSGESEIAKKGSWTTTNLKDTIHHVVEELMAPPTLSAILGFVFGLVPWLKSLVIGDGAPLRVIQDSIQLMGNGTIPCVTLILGGNLIKGLRKLEFKHTVIIAIVCIRYVILPLVGIAVVHGAYWVGFLPHDPLYRYVLMMQFALPPAMTIGTMAQLFDVAQEECSVIFLWTYLVSSISLTTWSMIFMSIPSLGQSAMISAFQLTQREEVEDNNTPLEKSRSN</aaseq>

Gene Sequence

<dnaseqindica>1..2485#2817..2890#3624..3710#3782..3958#4046..4168#4247..4347#4426..4478#4572..4757#5165..5382#ATGAACATGTCAATGTGCGCCGGCTCACTCTTCAACCTGGCCAACGGCCTCCTCATCAAGATGATCCGCGCCTACCCGTCACCTCCCGTCGTCCTCGCCTCCATCCATCGCGCGCTATCGGATTCTGGCCACCGTTCGCCGGCGGTGCTCGACGTCCTCGTGGATACCTACAAGAAGTCTGGGAGGGTGCAGGACGCCGCGGAGGTCGTCCTGATGATGAGAGATCGGGGCTTGGCTCCCAGCATTCGGTGCTGCAACGCGCTGTTGAAGGATCTGCTGCGCGCGGACGCCATGGCTCTGCTTTGGAAGGTGCGAGAGTTCATGGTTGGCGCTGGGATTTCCCCGGATGTGTATACGTACTCGACTCTGATCGAAGCCTACTGCAAGGTCCGGGAATTTGATACTGCCAAGAAGGTGCTTGTGGAAATGCGTGAGAGGGGGTGCGGCCTGAACACCGTAACCTACAATGTGCTGATTGCTGGGTTATGCAGGTCTGGGGCTGTCGAAGAGGCGTTTGGGTTCAAGAAGGACATGGAGGATTATGGACTAGTTCCTGACGGGTTTACCTATGGCGCACTCATTAATGGACTGTGCAAGAGCCGTAGGTCAAATGAGGCGAAGGCATTGTTGGACGAGATGTCTTGTGCTGAGCTAAAGCCTAATGTCGTAGTTTATGCCAATCTGATTGATGGGTTTATGAGGGAGGGCAATGCAGATGAGGCGTTTAAGATGATAAAGGAGATGGTTGCTGCTGGTGTGCAGCCAAACAAAATTACCTATGACAATCTTGTTCGGGGACTATGTAAGATGGGGCAGATGGACAGGGCTTCTCTACTTTTGAAGCAAATGGTCAGAGATAGCCATAGGCCTGATACCATCACGTACAATCTCATTATTGAAGGACATTTCCGTCATCATAACAAAAAGGATGCTTTTCGGCTTCTTAGTGAAATGGAGAATGCTGGTATTTCCCCTAATGTATATACTTATAGCATAATGATTCATGGGCTATGCCAAAGTGGTGAACCAGAAAAGGCAAGTGATCTCCTTGAGGAAATGACTACAAAAGGATTGAAGCCTAATGCATTTGTTTATGCGCCTCTTATCTCAGGGTACTGTAGAGAAGGTAATGTTTCATTGGCATGTGAAATTTTTGATAAGATGACAAAGGTGAATGTACTCCCTGATTTGTACTGCTACAATTCTCTTATATTTGGACTATCTAAGGTGGGAAGGGTGGAGGAATCTACAAAGTACTTTGCTCAGATGCAGGAGAGAGGATTGCTGCCAAATGAATTCACATACAGTGGCCTCATTCATGGGTATCTAAAGAATGGTGATCTAGAAAGTGCTGAACAGTTAGTGCAGCGGATGCTTGACACTGGACTAAAACCAAATGATGTTATCTACATTGATCTCCTAGAAAGCTACTTTAAGTCAGATGATATTGAAAAGGTGTCCTCTACTTTCAAGTCCATGTTAGACCAGGGAGTTATGCTTGACAACCGTATCTATGGAATCTTGATTCATAATCTGTCCAGTTCTGGAAATATGGAAGCAGCATTTAGGGTTCTTTCAGAGATTGAGAAGAATGGATCTGTTCCGGATGTGCATGTGTACAGCTCGTTGATATCAGGTCTTTGCAAGACAGCTGACAGGGAAAAAGCTTTTGGTATTCTTGATGAAATGTCTAAGAAGGGAGTAGATCCTAATATTGTATGCTATAATGCCCTAATTGATGGGCTGTGCAAGTCTGGTGATATTTCTTATGCCCGCAATGTCTTCAATAGCATATTAGCTAAGGGATTAGTGCCAAACTGTGTGACATACACAAGTTTGATTGATGGAAGCTGCAAAGTTGGTGACATCAGCAATGCATTCTATCTTTATAATGAAATGCTAGCAACAGGTATAACACCAGATGCTTTTGTCTATAGTGTACTTACCACTGGCTGCTCTAGTGCTGGTGACCTTGAGCAGGCAATGTTTCTGATTGAGGAAATGTTTCTTAGGGGACATGCAAGTATTTCTTCTTTCAATAATTTAGTTGATGGTTTCTGCAAACGTGGAAAGATGCAGGAAACTTTGAAGTTGTTGCATGTGATAATGGGCAGGGGCCTAGTACCTAATGCCCTGACTATTGAAAACATCATCAGTGGACTTAGTGAGGCTGGAAAACTCAGTGAAGTGCACACAATTTTTGTTGAGTTGCAGCAGAAAACTTCAGAAAGCGCTGCCCGCCACTTTTCCTCATTGTTTATGGACATGATAAATCAAGGAAAAATTCCTCTTGATGTGGTTGATGACATGATTCGAGATCATTGTAAAGAAGGAAATCTGGACAAGGCTTTAATGCTGCGAGATGTTATTGTTGCGAAAAGTGCACCAATGGGCTGCTCGTCTTATCTTGCTATAGTGGACAATCTATGCCGGAAGGGAAAATTAAGTGAAGCGTTGAATTTGCTGAAAGAAATGGACAAGAGAGGTATTTGTCCCAGTGAGAATCAATGCTTGATACTATTAACTAATCTTCATACATCTGGATATATCCAAGAACACAATACGGTACTTGATAATATGTTGTGTCACAAGTGGTTACAGAAGGACAGCAAATTCTGTAATTCAGCTGGTGATAATCTGGAATCTGTCAATGCAGAATAAACATAGAGCAGAATCCTTCCTATAAAAGAAAGTCTGATTCTATTATTCATGTTGCGAATGCATGTCTTAGCCTTGTTTTTGTTTATTGATGAGGAATTAAACAGATTAATTTTTTCAAGAAAATGCTCTTGTCCTGTTAGTTAATTGTTACACAGGGAACCTTCAGCCAACTTTGGTTGCTCTGCTTGGCATCTTCTGGTTCAGGAGGCATCATCATATATTGAACAAGGTGAGCTCTCATTAGCACATAGCCATTTACTGCGAAAAATTCTCTGGCTGATCTTGTTGAGATTTCTGACAGGTTGTTTTCACTGTCTTCGCACCATCTCTCATGTTTGCTAGCCTGGCGAAGACGGTCACGTTTTCTGACAGGTTGTTTTCACTGTCTTCACAATGCAAGTGCAGTTACTACAAAATCTGCCCAAATTCCATTTCCACATTCTAATAACTGCCAAAATCAACACAATATGTATAGCTCAGCCAGACTTTCTGGATTTTTTGAACTGTAAGCTCTTTCTGAAATTTATAAGGATTCTTGCAGAAGTGAGAGACTCTCTTTCTGAAGTAGTAGACAAGCTTTACATATCTAGCTAGTTTTCTCATTCAGAACACTTTTCGAATATCTGGGCAGACCATATATACAATATCCAAATTTTGTTTGCTGGGTAACTCCACTGCACTAACAAAAGAATTCTATCATGTAGGTGGTTTATGCCAATTAACATAGGGATCACATTCATGGCTGGTGGCACTCTAGGCTGGATAGCATGTAAAATCTTGAAACCACCACAACATTTCAGAGGAATGATCATTGCCTTCTGCTCAGCTGGTAACTTTCCTAGGTGGATTGCATGTTTTTACCCTCATATTTTTGCTGAATAATCCTAATGTTAGGAGTGTCATCAACTGACAAAAAAATGCAGGAAATCTTGGCAACTTGCTCCTGATTGTTGTCCCAGCAGTCCGTGACGAAGATGGCAACCCGTTTCGGAAAAGACAGCAGCCGCTGCCGCTCTCTTGGGCTCTCCTATTCATCATTGTCCATGGCTGTAAGGAAAAAAAAATCTCATTCACTGAATGATCAGCTGAACAAAAGAACTGACACACACTGTATCTGCAGCTTGGTGGCTTGTACATATGGACGCATACGTACAGTCTTATGAAGAAGAAGAGAGGTCAAATGTATCACCAGCCTAACAGCATTCAGGGCCTGGACGACAGCAATGAAGAACATCATGCTAAGAAATTCAAAGCAAATGGTGAAGCTGCTTGCGCCGATGAGGAGGCAACTCTTCCGGTGTCAGCTAAACTGGCTGAACACAACGAGGAGAACCAAATGGTAGGCTGAACAAAACTTAGTACTATTAACTTGTCTGAAATTCAGGAAGCTCCATTGCTGTCTGGAGAGAGCGAGATTGCTAAGAAAGGCTCGTGGACAACAACAAACTTGAAGGACACCATCCACCATGTTGTCGAGGAGCTGATGGCACCACCAACTCTATCTGCGGTGTGTTCTGACAAAACCAGCACAATATTTCATCTCATCAACCCTGTCTTGGACTAAATTTGGTTATTCTTGCTTCAGATACTTGGATTTGTTTTTGGGCTAGTTCCATGGTTGAAATCTCTTGTCATCGGTGATGGCGCCCCTCTCAGAGTCATCCAGGACTCCATCCAACTGATGGGGTAAGTTAGTATTTACAGTGTTCTTCTTCATAGAGTATTTCTGTCTATTTTTCAGTGTTTATTTTTCTTGTCTTGCAGAAATGGCACGATTCCTTGCGTCACCCTCATCCTTGGTGGCAATCTGATAAAAGGTAGGATGTCAATTACTCATGAAGCTGTGTGTTTTCTGAACTTGCTCTGGATGTGCATGAGTTTTCTGAACCTTTATCTGAATGTTTGTGCAGGGCTAAGGAAGTTGGAGTTCAAGCATACGGTGATCATTGCGATCGTCTGCATCCGCTACGTGATCCTTCCTCTAGTGGGGATTGCAGTAGTTCATGGTGCATACTGGGTCGGATTCTTGCCACACGACCCGCTGTACCGCTACGTGCTGATGATGCAGTTCGCGCTGCCACCTGCAATGACTATTGGTAATCTTTCCCTATAACAGATGCCATTTTCTTCGTACTATCTGTATTTAAATATATGATGCTGATGATTTTATTTGGTCCTTAATGTACAATGTTGACCTCTATTTTCTGTTACAATACAACATTTTTTGTAGCTAACAAAATTATAATATTGTAAAAGTACTTAGCATGAAGAAAAAAACATACCTATATGATTTTTTATGTCTTACACTAAATATTTTGAGAGCTGTTGTGATCAAAGTTTTATAAAAGTATAATAACTGAATAAAATCAACGGTATCATATATTTAAATACAACGAGAGTACTTATTTTGCGAGGCAATACCATTTCGTTCTAAAGCATTTATCTCTGCTTCCAGTGAGATCTCATCTGATCATACCTCTTGCATGTGTGTGATCTAATCCAGGAACCATGGCTCAACTGTTTGATGTTGCCCAGGAGGAATGCTCAGTGATATTTCTGTGGACTTACCTGGTTTCTTCCATTTCTCTCACCACCTGGTCCATGATATTCATGTCCATCCCGTCTTTAGGTCAAAGTGCAATGATTTCAGCATTTCAGCTAACTCAAAGGGAGGAGGTTGAAGACAATAATACGCCTCTAGAAAAGAGTCGATCCAACTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA011640