Os09g0467100

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Revision as of 07:28, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0467100| Description = SAICAR synthetase family protein| Version = NM_001069957.1 GI:115479656 GeneID:4347318| Length = 3855 bp| Definitio...")
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Gene Name

Os09g0467100

Description

SAICAR synthetase family protein

Version

NM_001069957.1 GI:115479656 GeneID:4347318

Length

3855 bp

Definition

Oryza sativa Japonica Group Os09g0467100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:18396333..18400187

Sequence Coding Region

18396358..18396681,18396776..18396877,18397214..18397343,18397560..18397652,18397725..18397813
,18398251..18398331,18398480..18398569,18399045..18399134,18399239..18399289
,18399487..18399533,18399683..18399740,18399813..18399869

Expression

GEO Profiles:Os09g0467100

Genome Context

<gbrowseImage1> name=NC_008402:18396333..18400187 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:18396333..18400187 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtctccctccgcgccgccgtccgccctccgcctccgggggcttcccaaggcttcgctgccggcctcctcctctttcccgccctccgctcgcttcccccaccacctctccatgtccgcctcctcgtctcgccgccctccgcccctcgccgcaacggcggcggccgccgggaccgggagtggcgcctccccatccctcctcgcagccgacccgggccaccgcgacgccgtcctcctcgccgctcgcggcgccatggcgaactgcctcggcgagaccagcctccacctcgccgtccccgggctccggctcgcggccaagggcaaggtgagggacgtgtacgagagcggggagcatctggtgctggtcaccaccgaccggcagagcgcgttcgatcgcgtcctggcttccatccctttcaaggggcaggtgctcaacgaaacaagcctttggtggttcgataggacccgtcatatcactccaaatgcagtagtttcttctcctgataagaatgtgacaattgcaaaaaggtgctcagtttttccagttgaatttgttgtgaggggatatgttactggaagcactgatacatctttgtggactgtttataacaaaggtgcgaggaactattgtggaaatgttctacgtgatggaatggtaaagaatcagaagctatctgcaaatatacttacaccaacaactaaagctgcagatcatgatgttcctgtcactcctgaagagattatcaattcaggactaatgtcaaaggaagattttgatgaagcaagaagcaaagccttaagcttatttgcatatgggcaggaagtggccttagagaatggactgattctagttgacacaaagtatgagtttggaaaaacagctgatgggacaatcatgttgattgatgaggtacacactcctgactccagcagatattggattgctgattcttacgaagagagattcagttctggtcttgagcctgaaaatgttgacaaggagttcttaagactctggttcaagaacaattgcaatccatacgaagatgcggttctgcctgaagctccagaagaactagtttgtgaactagcttggcggtacattttcctgtttgagacaattacaaacacaaagttcgagatccccaaaactcaggagccgattcacgaaagaatatcaaggaatgttgcacaagccttgcagaacctttga</cdnaseq>

Protein Sequence

<aaseq>MSPSAPPSALRLRGLPKASLPASSSFPPSARFPHHLSMSASSSR RPPPLAATAAAAGTGSGASPSLLAADPGHRDAVLLAARGAMANCLGETSLHLAVPGLR LAAKGKVRDVYESGEHLVLVTTDRQSAFDRVLASIPFKGQVLNETSLWWFDRTRHITP NAVVSSPDKNVTIAKRCSVFPVEFVVRGYVTGSTDTSLWTVYNKGARNYCGNVLRDGM VKNQKLSANILTPTTKAADHDVPVTPEEIINSGLMSKEDFDEARSKALSLFAYGQEVA LENGLILVDTKYEFGKTADGTIMLIDEVHTPDSSRYWIADSYEERFSSGLEPENVDKE FLRLWFKNNCNPYEDAVLPEAPEELVCELAWRYIFLFETITNTKFEIPKTQEPIHERI SRNVAQALQNL</aaseq>

Gene Sequence

<dnaseqindica>26..349#444..545#882..1011#1228..1320#1393..1481#1919..1999#2148..2237#2713..2802#2907..2957#3155..3201#3351..3408#3481..3537#aaacctctcgccgttctcttcccccatgtctccctccgcgccgccgtccgccctccgcctccgggggcttcccaaggcttcgctgccggcctcctcctctttcccgccctccgctcgcttcccccaccacctctccatgtccgcctcctcgtctcgccgccctccgcccctcgccgcaacggcggcggccgccgggaccgggagtggcgcctccccatccctcctcgcagccgacccgggccaccgcgacgccgtcctcctcgccgctcgcggcgccatggcgaactgcctcggcgagaccagcctccacctcgccgtccccgggctccggctcgcggccaagggcaaggtgagcaaaaaaaaaaaaaaaaaccattggcctgtgttgccccactgattctccgattggactagggagtgaccgattgcgtttctgggtgaaggtgagggacgtgtacgagagcggggagcatctggtgctggtcaccaccgaccggcagagcgcgttcgatcgcgtcctggcttccatccctttcaaggggcaggtatatactccttatctgtcgttattcagtgccaatgttgacaagcgtttgttcagtttccatgtcgatgatattttggtgataggctgcactgcctggatttttagcccttgttgttgtttcatgcaactgcagtatttgccagtaatggtttgcaagtaataatcaactgagaatatgagaagggtctgttcttagtcatgcctagaattttgtcaattgttaatctagctgtttattcccctgttgattgtacaagcagaatgtatgttggaactagcgattatcgcttgcatggtcgatcattttgatgtgctttcatctggttgaatataggtgctcaacgaaacaagcctttggtggttcgataggacccgtcatatcactccaaatgcagtagtttcttctcctgataagaatgtgacaattgcaaaaaggtgctcagtttttccagttgaatttgttggtgagacctaaggcttgctgcatttactgattatttctcctactgctttgcaatcatatccctcagaattttgttggctgtgttgatcaattagttctttgttttcgtgattcttatgaatcttgtctatcatcctttttttttaaaaaaaaaaatcttatggagaactgttatctgtgttgatcaattagctttattttcatgcttttttttcagtgaggggatatgttactggaagcactgatacatctttgtggactgtttataacaaaggtgcgaggaactattgtggaaatgttctacgtgatggtatgctgaaccaacaaacatccaaattggattttttttctttacttacagtgagtggcctcttatatgcaggaatggtaaagaatcagaagctatctgcaaatatacttacaccaacaactaaagctgcagatcatgatgttcctgtcactcctgaagaggtctttactctccttcacttttatgtcaacataatcttaacagtctaactccataatgattcccctcaaaatagacactagcttatatagggaaggggataaacagatgctcttggtagtctaacattggaattacattggtgtattggagaaaggtggaaaattaacgatggcactagttgaagcctgtcattctggagtcacaaaagttaccgtactgtctttagtcagttattgaagtttctcctttgcttataagtctaattatcacagttggcagtaatctagaagtccttgaatgattcatggatctcattttcctttttatgagctattttagttgcactttgtgcctccttggtgtttattcttcagcatgtaaatgctaccgtatttattcatcgcctccaaagaggtcatgacattgcattctgcagattatcaattcaggactaatgtcaaaggaagattttgatgaagcaagaagcaaagccttaagcttatttgcatatgggcaggtgattaattctcatatcttctggttcttgtaaggtgtcagttgcatgcctaataatcttctatagcaatgtcactggcaatgttaacattggacctggaacatctcaaatttagccttgatatgcctttttatttaaatctctgcaggaagtggccttagagaatggactgattctagttgacacaaagtatgagtttggaaaaacagctgatgggacaatcatgttgattgatgaggttacatcttcttacatgattttatccttgtgatatgttctgccttcaaattttatgcctgtcggtctcaggaaacagaaagagcatggctgatccaaccttagataactatgcctgactagcaacttgtgctagctgtgctcactgtttctctctataaacgtaacatgctcgtcatgacatcactttagtgtgttattgtgttggaactacccttacataagtacatgttttgttttcatatttggtaagtgatttttgcacaaaaaccaagccaagggatttttgtgctggggcttgttctaagggtttgagttaccatttcgccaaccggttcccattcccagaaatatagtttctaggatttttttatttttttaaaaaaatgttgcatgtcttaatctctttgataatttctaatatatttaatgatgatttctaacagaattccaaatttcctctttttgacaagcaggtacacactcctgactccagcagatattggattgctgattcttacgaagagagattcagttctggtcttgagcctgaaaatgttgacaaggtagactgctcctgaaactatacatgtggcagcgttatgccttaaacttattatgcttttaatttacaatggaattgctgaagatgtgattttattttcaccaggagttcttaagactctggttcaagaacaattgcaatccatacgaagatgcggtataccatttttccttaaaccacttaagcattttccatagtaagcaaatgttgataattagtgaaatatgagatgtccatgaataggtccacgtataaattccatgtccattgactgcatgtttgtttgtcttttgaaggctctttgtttttgtgaaaactcatttcatgtttatctgttactttaaaatactcaggttctgcctgaagctccagaagaactagtttgtgaactagcttggcggtatgtctatttctctgagtttgttctagtacttctcatttcagagcatgttcaaccaacaactttatgtgcttctctatgtacatgaatctcgtacaaacatgatatcatattggttgaattatagtttgcttaaatatccaccacaggtacattttcctgtttgagacaattacaaacacaaagttcgagatccccaaaactcaggtatgtgacgacagtttggtgaatttgctgtaactgacaaccatatacttaaaacatttttgttaaatgcaggagccgattcacgaaagaatatcaaggaatgttgcacaagccttgcagaacctttgattgtggataaggaagaggatttccagaacaaaaacttgcttgctgatgagaataagaggtgcacttctggacttctggtaccggcattactaataataatatcagcgtacgttcatgccgtctatcattcaaagtatacgtgtgctccgagatgtaatatggttggaaacaactatagccagaatcgcctggcaatactctctgcccttaatagtttccctgttgtgagggtcagtgagtgatagagcgccatacacggtatgcatgattgcgtgctaatatttttttcaccctgtgatgtaacattttctggggttc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0467100, RefSeq:Os09g0467100