Os07g0522500

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Revision as of 08:38, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0522500| Description = Similar to PDR6 ABC transporter| Version = NM_001066348.1 GI:115472428 GeneID:4343412| Length = 4393 bp| Definition...")
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Gene Name

Os07g0522500

Description

Similar to PDR6 ABC transporter

Version

NM_001066348.1 GI:115472428 GeneID:4343412

Length

4393 bp

Definition

Oryza sativa Japonica Group Os07g0522500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:20874455..20878847

Sequence Coding Region

20874456..20874512,20875130..20875420,20875511..20875594,20876624..20876757,20876903..20877130
,20877278..20877449,20878038..20878292,20878384..20878656

Expression

GEO Profiles:Os07g0522500

Genome Context

<gbrowseImage1> name=NC_008400:20874455..20878847 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:20874455..20878847 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>attgtttattctgcttggctgcgcctttcctcagaagttgataagaacaccaggaaggtgtttgtggaggaagtgatgtcactagttgagcttgatgtattgcgtgatgctctggttggtctccctggtgttagtgggttgtcaactgaacaaaggaagaggctgacaatcgcagtagaactagtggcaaatccttcaattatcttcatggatgaaccaacttcaggtcttgatgctagagctgcagcaattgttatgcgtactgtgagaaatacagttaacacaggacgaactgtggtttgcacaatccatcaacctagcattgatatctttgagtcttttgatgagcttctgttgctaaagaggggaggacgggttatatatgctggccagcttggtctccattcacaaatactagtcgaatatttcgaggcaattccaggggtcccaaaaatcacagaaggatataacccagcaacatggatgcttgaagttagctcttctctagctgaggctcgtctggacatagactttgctgaagtttatgccaattctgcactttaccggagcaatcaagaacttattaagcagctgagtgttccacctccaggcttccaggatctctcatttcctaccaaatattcccagaatttcctaaatcagtgtgtggcaaatacatggaagcaatttcaatcttattggaaggatccaccctacaatgctatgcgttatgttatgacgcttctctatggtcttgtgtttggtactgtcttttggcggaggggaaagaatatagagtccgtgaatgatctgaacaatctacttggagccacctatgctgctgttttcttccttggagcagcaaatttgctcacacttttgcctgtggtgtcagttgagaggacagtcttttaccgtgaaaaggcagcagggatgtactctccactgtcttatgcgtttgcacaaggatttgtcgagttctgctacagtgcagttcaaggtgttctttacactatcctcatctattccatgattggctatgagtggaaggcggacaagttcttctacttcctgttctttatgattgcggccttcgcctacttcacattgtttagcatgatgctggttgcgtgcactgcttcggaaatgcttgcggccgttcttgtttcatttgtgctctcctcgtggaacaattttgccggattcattataccccgtccactgattcctgtttggtggagatggttctattgggccaacccggtctcctggaccatctatggagtgattgcgtcgcagtttgcggacagcgaccgtgttgtcaccgttcctggccaatctaccaccatggtggtgaaggatttcttggagaagaacatgggctttaagcacgacttcctcggctacgttgtgctggctcatttcggctacgtcatcatcttcttcttcctctttggatacggcatcaagtgcttgaacttccagaaacggtag</cdnaseq>

Protein Sequence

<aaseq>IVYSAWLRLSSEVDKNTRKVFVEEVMSLVELDVLRDALVGLPGV SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCT IHQPSIDIFESFDELLLLKRGGRVIYAGQLGLHSQILVEYFEAIPGVPKITEGYNPAT WMLEVSSSLAEARLDIDFAEVYANSALYRSNQELIKQLSVPPPGFQDLSFPTKYSQNF LNQCVANTWKQFQSYWKDPPYNAMRYVMTLLYGLVFGTVFWRRGKNIESVNDLNNLLG ATYAAVFFLGAANLLTLLPVVSVERTVFYREKAAGMYSPLSYAFAQGFVEFCYSAVQG VLYTILIYSMIGYEWKADKFFYFLFFMIAAFAYFTLFSMMLVACTASEMLAAVLVSFV LSSWNNFAGFIIPRPLIPVWWRWFYWANPVSWTIYGVIASQFADSDRVVTVPGQSTTM VVKDFLEKNMGFKHDFLGYVVLAHFGYVIIFFFLFGYGIKCLNFQKR</aaseq>

Gene Sequence

<dnaseqindica>2..58#676..966#1057..1140#2170..2303#2449..2676#2824..2995#3584..3838#3930..4202#cattgtttattctgcttggctgcgcctttcctcagaagttgataagaacaccaggaaggtatgtgttcctattatttttgtggtggatgccatttagtaaactcaataactcatgatgtttcttggggggaaatcagaaaatcgtgttaattgtagttgattgtgtgtactgtccattaatttaatccacttattggtcactaattatatattatcacctaccaaaagaggccacacgattgtgtaggcttgtatattacccgaatctcgtccacatgcaagacacacttattcgttgagttcctaggaacctgacagcacactaaactgtcatttgccattttttatgagtactaacaaaatgaccatgctttgctatggataaaataaaatatattatcatatgtaatagataaaaatatttattgaatatgttagtattcacttgtttcaaccaaatatgtagactattccaaaatatcagaaaatatcaggggccaatttgtaaaaactgtaaacagcggtggggtgccaccaccaatagagacttttaaggagtatacatatacaaggcatttttgacaatcatgatattgaagaatagatgcaacatttttttatcttgtgaagttgaaaatactaattatttctgatgaaattaattccactgtgtaggtgtttgtggaggaagtgatgtcactagttgagcttgatgtattgcgtgatgctctggttggtctccctggtgttagtgggttgtcaactgaacaaaggaagaggctgacaatcgcagtagaactagtggcaaatccttcaattatcttcatggatgaaccaacttcaggtcttgatgctagagctgcagcaattgttatgcgtactgtgagaaatacagttaacacaggacgaactgtggtttgcacaatccatcaacctagcattgatatctttgagtcttttgatgaggtccttgctactttgctcttgtttgtttgtccgttagttctcctttcagcgctgtaaggttatactgaaaaatggattgtgttttttcagcttctgttgctaaagaggggaggacgggttatatatgctggccagcttggtctccattcacaaatactagtcgaatatttcgaggtgaactgtctttgatactatatttcagtctctatgataaccaatttgcaatatgttaaccatctgtattgctaaaatcagttaatacttctcatctattgtgacccatgaaattccattgggcaaacttggatggaattagtagcccgaagacatgcattttttttaattagtgaatgtatgaatactagttggtaatctatcaactattgaaggtcgtttaggccctttctagtgatgcacaaatgttcaggcataaatttcattgtccatgactgtatcattttagaacatgtgcagttaaaaccttccatcttaaatcaatagcatatgcaaatagacttttcacgagaactactttcatatagttacatctttttaatgatttttatatgattacaaaatgcaactatcaaacatgtgcattggagactctgaatgcagaagtaaaaaataatggagggagtagaacacattattgttggaactcataaatatttttttctatagtactaaggttgattcttcaaaactgcttgtacaattgtgcaacaaactctttttaatgacattgaggcaaagggcaactataccacctcaaaaactaatatctcagataaaagtaatttgtaattgtaaaactaaaagatatacaattctgtagtccctctttttacaaatgctatttcagaatatgtgtaacctgtaatctattgttttgagcaataattaataaaacttgaataccaatataagtgcttggatctatcgcacggaaaacaatattagtgtatttctcatcgacagtatttatataccgttgtgtttttttatttgctaacatataattagaaaagtaacgttcaaatgtttagtggagactatctcaatgcctagaacaaatgtttattaaaagagcatggggaacatgcatggaattaagagaacttgggtaaccgtattcaatccgagactaaataagaaagaaagaaaggctacttgcttctaatgtatatcgttctcctgcaggcaattccaggggtcccaaaaatcacagaaggatataacccagcaacatggatgcttgaagttagctcttctctagctgaggctcgtctggacatagactttgctgaagtttatgccaattctgcactttaccggtaaatatgtgcgcaatattattcaaatatttagtagtacaatttttgttgctttgacagttgtgattaatttcttccaatggtcaaacagacaaaataagtatcttttctatagctcttacattatttccgtcaatgtgttcaggagcaatcaagaacttattaagcagctgagtgttccacctccaggcttccaggatctctcatttcctaccaaatattcccagaatttcctaaatcagtgtgtggcaaatacatggaagcaatttcaatcttattggaaggatccaccctacaatgctatgcgttatgttatgacgcttctctatggtcttgtgtttggtactgtcttttggcggaggggaaagaatatgtatgttccttcttcttgttctaatttatattcaaattctacccattcgcctattcttattgcaaccatttcactgaatgtagtttcacagtgacacaactctattgcctcttagctgatcatttgaattctttcctatatgtacagagagtccgtgaatgatctgaacaatctacttggagccacctatgctgctgttttcttccttggagcagcaaatttgctcacacttttgcctgtggtgtcagttgagaggacagtcttttaccgtgaaaaggcagcagggatgtactctccactgtcttatgcgtttgcacaagtaagttctgaacacccttacaagatatgcttatgcatttaccgatgtacgatgaacaaggtatatatgagccttcctccagctagaacctcccaattcaaagcaggccaaaaagaatgtttttttttttttgaaatgatgccaaaaagaatgttaagcagcagaggacaagtcgcttcccttctcgtatttgacatagtaggataaggaggcatgttgaaagaatgtcataaggagacatttaagagattggatttgattgtctgtcatcacaaatgcatttgcgttggccctaaatatatgtgtacatcagcataatctggattgtgaggaaaaactcccaatagtctgatttcaagagtagaaggggctcggtatccggattcatagtttagggtgggtggtggactttagtgatattcaacacagctagtattcacacctctggtttttgtagctggaccttttatttaggcgaacttttagagtatgcgcaggatgcatttcattgtttacatgtcaactgaagtcttaaaaataccaaaatatctactgaagcttctcccaaaaactgaatgatgtgcacagggatttgtcgagttctgctacagtgcagttcaaggtgttctttacactatcctcatctattccatgattggctatgagtggaaggcggacaagttcttctacttcctgttctttatgattgcggccttcgcctacttcacattgtttagcatgatgctggttgcgtgcactgcttcggaaatgcttgcggccgttcttgtttcatttgtgctctcctcgtggaacaattttgccggattcattataccccgtccagtaagtgctttcaataagaagtgatgctatcggacttacattatctaggctctcagcttgtcatacatctctgaaatattttctcttgcagctgattcctgtttggtggagatggttctattgggccaacccggtctcctggaccatctatggagtgattgcgtcgcagtttgcggacagcgaccgtgttgtcaccgttcctggccaatctaccaccatggtggtgaaggatttcttggagaagaacatgggctttaagcacgacttcctcggctacgttgtgctggctcatttcggctacgtcatcatcttcttcttcctctttggatacggcatcaagtgcttgaacttccagaaacggtaggaggccggtgtccagcaggatgtcaatccgaggtcacgtttttggagtgtaaagcaaatgtagcaacttaataccgatgctttttttgtgtagatatatagtctgttcgatatctgctagcttgtattgacacttaatgtacaacattatttactcaaatgttctgagtttatggtatattattctttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0522500, RefSeq:Os07g0522500