BGIOSGA012793

From RiceWiki
Revision as of 15:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA012793

Description

Phospholipase D

Definition

Oryza sativa Indica Group BGIOSGA012793, complete gene.

LocusTag

OS03G0391400

Ensembl Transcript ID

BGIOSGA012793-TA

Ensembl Protein ID

BGIOSGA012793-PA

Length

4909

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:17432254..17437162

Sequence Coding Region

17432254..17432349,17434156..17434221,17434274..17436242,17436696..17437162

Genome Context

<gbrowseImage1> name=IndicaChromosome03:17432254..17437162 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:17432254..17437162 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCACGGATGCTGCTGCACGGGGTGATCGACGCCAAGATCGTGGAAGCAGACCTGTCCGTGACGTCAGATGGGCAGCTCAGGCCGTCCCGGAAGACTCTGATGAAGAAGAAGGTCTTCTCATGGATCAAGAAGAAGCTGCCCTTCTGCAACAGCGGCCAGGCCAGTGTTGTATTGTATCTTAATGATTATATTAACGCGGCGGCGGCGGCGGCGGCGGCGGTGCAGACGCAGCAGGTGGAGAACGCCGTCGGCCTCGGCCCGCTGTCCGGCAAGCTGTACGCGACGGTGGACATCGACAAGGCCCGCGTCGCGCGGACGCGCACGGTGGAGCCGACGGGCACGCCGCGGTGGAAGGAGTCGTTCCACATCTACTGCGCGCACTACGCCGGCGACGTCATCTTCACCGTCAAGGCCGAGAACCCCGTCGGCGCCACGCTCATCGGCCGCGCCTACCTCCCCGTCGACGAGGGCCTCGCCGCCGGTGCGCCGGTGTCCGACCTGTGGCTCCCCATCTGCGGCGAGGGCCGCCGCCCGATCGACGGCGGGGACAAGATACGCGTCCAGCTCCGGTTCACCGGCGTCGCCGCCGACCCGGCGGCGCGCTGGGGCGCCGGCGTCGGGAGCGGCGCGTACCAGGGCGTGCCGCGCACCTTCTTCCCGCAGCGCCGCGGGTGCCGCGTCAGGCTGTACCAGGACGCGCACATCGCCGACGGCTTCGCGCCGCGCATCCAGCTCGCCGGGCGCAGGTGGTACGAGCCGCGGCGGTGCTGGGAGGACGTGTTCGACGCGATCAGCAGCGCCCGGAGGATGGTGTACGTCGCCGGGTGGTCCGTCAACACCGACGTCGTGCTGGTGCGGCGGCCGTCGTCGTCGTCGGAGACGCTCGGCGAGCTGCTCAAGAGGAAGGCCGAGCAGGGCGTGATGGTGCTGCTGCTGGTGTGGAACGACCGGACGTCGGTGGGTCTCGGCCCGATCCGCCGCGACGGGCTGATGGCGACGCACGACCAGGACACGGCGAGGTACTTCGAGGGCACCAAGGTCCACTGCGTCCTCTGCCCCCGGAACCCCGACCAGGGCCGGAGCTACGTGCAGGACGTCGAGACGGCCACCATGTTCACGCACCACCAGAAGACGGTGATCGTCGACGGCGGCGGCGGGAAGACGGCGCCGGGCCTCGTGAGCTTCCTCGGCGGCATCGACCTGTGCGACGGGAGGTACGACACGCAGGAGCACCCGCTGTTCCGGACGCTCGACACCACCCACCGCGGCGACTTCCACCAGCCCAACTTCCCCGGCGCGTCCATCGCCAAGGGCGGGCCGAGGGAGCCATGGCACGACATCCACTGCCGCGTCGAGGGCCCCGCGGCGTGGGACGTGCTCGACAACTTCGAGCAGCGGTGGCGCAAGCAAGCCGGCAGGGGCAAGGACAGCCTGCTGGTCACCCTCGACCGGAGCATGGCCGCGCGCGACTTCGACCAGGCCGACCCGGAGCACTGGAACGTGCAGGTGTTCCGCTCCATCGACGGCGGCGCGGCGGCGGGGTTCCCGGAGAGCCCCGACGAGGCCGCGACGGCGGGGCTGGTGTCCGGCAAGGACCAGGTGATCGAGCGCAGCATCCAGGACGCGTACATCCACGCGATCCGGCGCGCCCGCGACTTCGTCTACGTGGAGAACCAGTACTTCCTGGGGAGCTCGTACGCGTGGCGCGGCGGCGAGGGCGGCGTGGCGAGCGTGGAGGGGATCAACGCGCTGCACCTGGTCCCGAGGGAGCTCTCCCTCAAGATCGCGAGCAAGATCGCCGCCGGCGAGCGGTTCGCGGTGTACGTGGTGGTGCCGATGTGGCCGGAGGGCGTGCCGGAGAGCGACTCCGTGCAGGCCATCCTGGACTGGCAGCGGCGCACCATGGAGATGATGTACAGGGACGTGGACGCCGCCATCCAGGCCAAGGGGATCCGCGCCGACCCCACCGACTACCTCAACTTCTTCTGCCTCGGCAACCGCGAGCGCCTCCCCGTCCCCGGCGGCGACAGCTACGAGCCAACGGAGCGCCCCGACCCCGACACCGACTACATGAGGGCGCAGAACGCCCGCCGCTTCATGATCTACGTCCACGCCAAGACGATGATAGTGGACGACGAGTACATCATCGTGGGGTCGGCGAACATCAACCAGAGGTCGATGGACGGCGGGCGGGACACGGAGATCGCGATGGGCGCGTACCAGCCGAGCCACCTGGCGTCGGTGAACCGGCCGGCGAGGGGCCAGGTGCACGGCTTCCGCCTCGCGCTGTGGCACGAGCACCTGGGCAGGGCGGCGGCGGCGTCGGCCGCCGGCGACCTCCTCCGGCCGTCGAGCCTGGCGTGCGTGTGGCTCGTGAACCAGGCGGCGCGGCGCCACTGGGACGCGTTCGCGAGCGGCGGCGACGACGGCGCGCCGCCAACGGAAGACCTCCCGGGCCACCTGATGGCGTACCCGGTGCGCTGGATGGGCGGCGGCGACGGCAAGCTCGTGGCGGCGACGGAGACGTTCCCGGACACCAAGGCGAAGGTGCTGGGTGCCAAGTCTGACGTGCTCCCGCCCATCCTCACCACATGA</cdnaseq>

Protein Sequence

<aaseq>MARMLLHGVIDAKIVEADLSVTSDGQLRPSRKTLMKKKVFSWIKKKLPFCNSGQASVVLYLNDYINAAAAAAAAVQTQQVENAVGLGPLSGKLYATVDIDKARVARTRTVEPTGTPRWKESFHIYCAHYAGDVIFTVKAENPVGATLIGRAYLPVDEGLAAGAPVSDLWLPICGEGRRPIDGGDKIRVQLRFTGVAADPAARWGAGVGSGAYQGVPRTFFPQRRGCRVRLYQDAHIADGFAPRIQLAGRRWYEPRRCWEDVFDAISSARRMVYVAGWSVNTDVVLVRRPSSSSETLGELLKRKAEQGVMVLLLVWNDRTSVGLGPIRRDGLMATHDQDTARYFEGTKVHCVLCPRNPDQGRSYVQDVETATMFTHHQKTVIVDGGGGKTAPGLVSFLGGIDLCDGRYDTQEHPLFRTLDTTHRGDFHQPNFPGASIAKGGPREPWHDIHCRVEGPAAWDVLDNFEQRWRKQAGRGKDSLLVTLDRSMAARDFDQADPEHWNVQVFRSIDGGAAAGFPESPDEAATAGLVSGKDQVIERSIQDAYIHAIRRARDFVYVENQYFLGSSYAWRGGEGGVASVEGINALHLVPRELSLKIASKIAAGERFAVYVVVPMWPEGVPESDSVQAILDWQRRTMEMMYRDVDAAIQAKGIRADPTDYLNFFCLGNRERLPVPGGDSYEPTERPDPDTDYMRAQNARRFMIYVHAKTMIVDDEYIIVGSANINQRSMDGGRDTEIAMGAYQPSHLASVNRPARGQVHGFRLALWHEHLGRAAAASAAGDLLRPSSLACVWLVNQAARRHWDAFASGGDDGAPPTEDLPGHLMAYPVRWMGGGDGKLVAATETFPDTKAKVLGAKSDVLPPILTT</aaseq>

Gene Sequence

<dnaseqindica>1..96#1903..1968#2021..3989#4443..4909#ATGGCACGGATGCTGCTGCACGGGGTGATCGACGCCAAGATCGTGGAAGCAGACCTGTCCGTGACGTCAGATGGGCAGCTCAGGCCGTCCCGGAAGGTACGCTTAACGCTTCCTCCCAGCTAACTAGTTTCTTCCTGTATCTGAAAGATGGAAAGTACTATATGTTCAGGTGTTGTTTCCATCTGAATGTTCAGTGAGAGTGTGAATGTTTTGAGTTGGGGTTCTGAATGACAATATGGACAGACATGTCCTGCTGTTCTTTTTTGTTTTTGCAGTGAGAAAGGAAAAGGGAAACATTATCTGAATTCTTATTGCAGCTTATCTTAAGACTAATGAAGTCAATGGGTTGGACTCCGATTGACATAATATTTTGCTCAAGAGGAATAGCACATGTGGCAGGCTCTGCCAAAAGAATACAATTTCCTGTTCCTGACTGAGCTTAGGAATTTTAGATCCTTAGACTATATACAAAAGGTTTGCATATAGTTGTATTAAGAGAAGGTAACCAGAGAAGCACCTAAGGTGGTGTTGTTGTGTCATGCATGCATGACGTCACCCACCAAGGTTTAAATCCTAATACTTATAAATATTATGCATACATGGTTGCGTATTTAATAAGAACTTAATGAGACAAATGATTTGTTGTCGTCTCCATTTTAGTATGTGTTAGGAGATATATTTATCTGTGTGAGAGTGTGATGTGGACGTGTAGAACTACGAAAAAAAAGAAGAACACGGGTCTTAACGCTTGAGGGAAAAAACACAGCCAAACTACAAGTTGGCCGGGAGGCTATTTTGCGTAGAGGGGGAGGAAATGGAAGAGGACCTATCTCGAACATTGCTTTTCAACATGTCTAAATTTTACACGAATTTGATAGAAAAACATTCAATTCCATTTAAAATAAAACGAACATTCAATTGCTGTATTCCTCTGTGTTTTTTTCGGCCTCTTGGCCTTGTACTTTTGACACACCATTAATAAAATGGTTAAGCGTAAAAAAAAAGTTATATCCAATTCATGTTATTATTGTGACATAATTGCATGGATTATGCTGCTGTGCAATTGTATGAATTTCATGTTAGATGAACTTCTTAGCATTCTAGTATATCGTCAAATCTGTTTTTAGAAGTTTCCAACACAGTTTGTATTGCATTTAAGAGAAAAGAAAATGCATAAAGGAGATAAAAATCAATCCTCGACTGATTAGAATCATCCTCATAAATGCAATAATAATGTATATTGAATTTCTTATAAGTTACTTCCTCCGGTCATAAATATTTGACGTTTGAAACAATATTCGATCAAAATTTTAAAATTTCGGTAATTAATATTACATTAGAATAAGTTTAAAAATCCAATAAATTAATAGTATTACTTTTTAAGATTGTTTTTAAACTACGGCTGTGTTTAGTTCCTTCAAACTTCCAAAATTCCATCACATCAAATGTATGAACACATGCATAGAGTATTAGATGTGGACAAAAAAACCAATTGCATGTAAATTGCGAGACAAATTTTTTGAGTCTAATTACACCATGATTTGACAATATGGTGCTATAGTAAACATTTGCTAATAAATGATTAATTAGGCTTAATAAATTTGTCGCAGTTTACATGCGGAATCTGTAATTTGTTTTATTATTAGTCTATATTTAGTTCTTTAAATGTGTGTCCGTATACTTAAAAAAAATTTGGCTGTGGAATTAAACACGGCCTACGTATTTGAGAAAACATTGATGGTCAGAATTTTAAAAGCATGACTGAATTATATCCTGAATGTCAAATATTTTTTACCCGAGCGAACATAAACCATCGTGAGCTGCGATATGATTCTCATTAGTCATTACAGTTTGAAAATGCAATCTAATTAACCAAACTGAAAATTTAAACACTTCAACCAGACTCTGATGAAGAAGAAGGTCTTCTCATGGATCAAGAAGAAGCTGCCCTTCTGCAACAGCGGCCAGGTTTAAGCTTGATCACAAACTAGCCCTAATACTATAAGGCCATCAAATTAAGGCCAGTGTTGTATTGTATCTTAATGATTATATTAACGCGGCGGCGGCGGCGGCGGCGGCGGTGCAGACGCAGCAGGTGGAGAACGCCGTCGGCCTCGGCCCGCTGTCCGGCAAGCTGTACGCGACGGTGGACATCGACAAGGCCCGCGTCGCGCGGACGCGCACGGTGGAGCCGACGGGCACGCCGCGGTGGAAGGAGTCGTTCCACATCTACTGCGCGCACTACGCCGGCGACGTCATCTTCACCGTCAAGGCCGAGAACCCCGTCGGCGCCACGCTCATCGGCCGCGCCTACCTCCCCGTCGACGAGGGCCTCGCCGCCGGTGCGCCGGTGTCCGACCTGTGGCTCCCCATCTGCGGCGAGGGCCGCCGCCCGATCGACGGCGGGGACAAGATACGCGTCCAGCTCCGGTTCACCGGCGTCGCCGCCGACCCGGCGGCGCGCTGGGGCGCCGGCGTCGGGAGCGGCGCGTACCAGGGCGTGCCGCGCACCTTCTTCCCGCAGCGCCGCGGGTGCCGCGTCAGGCTGTACCAGGACGCGCACATCGCCGACGGCTTCGCGCCGCGCATCCAGCTCGCCGGGCGCAGGTGGTACGAGCCGCGGCGGTGCTGGGAGGACGTGTTCGACGCGATCAGCAGCGCCCGGAGGATGGTGTACGTCGCCGGGTGGTCCGTCAACACCGACGTCGTGCTGGTGCGGCGGCCGTCGTCGTCGTCGGAGACGCTCGGCGAGCTGCTCAAGAGGAAGGCCGAGCAGGGCGTGATGGTGCTGCTGCTGGTGTGGAACGACCGGACGTCGGTGGGTCTCGGCCCGATCCGCCGCGACGGGCTGATGGCGACGCACGACCAGGACACGGCGAGGTACTTCGAGGGCACCAAGGTCCACTGCGTCCTCTGCCCCCGGAACCCCGACCAGGGCCGGAGCTACGTGCAGGACGTCGAGACGGCCACCATGTTCACGCACCACCAGAAGACGGTGATCGTCGACGGCGGCGGCGGGAAGACGGCGCCGGGCCTCGTGAGCTTCCTCGGCGGCATCGACCTGTGCGACGGGAGGTACGACACGCAGGAGCACCCGCTGTTCCGGACGCTCGACACCACCCACCGCGGCGACTTCCACCAGCCCAACTTCCCCGGCGCGTCCATCGCCAAGGGCGGGCCGAGGGAGCCATGGCACGACATCCACTGCCGCGTCGAGGGCCCCGCGGCGTGGGACGTGCTCGACAACTTCGAGCAGCGGTGGCGCAAGCAAGCCGGCAGGGGCAAGGACAGCCTGCTGGTCACCCTCGACCGGAGCATGGCCGCGCGCGACTTCGACCAGGCCGACCCGGAGCACTGGAACGTGCAGGTGTTCCGCTCCATCGACGGCGGCGCGGCGGCGGGGTTCCCGGAGAGCCCCGACGAGGCCGCGACGGCGGGGCTGGTGTCCGGCAAGGACCAGGTGATCGAGCGCAGCATCCAGGACGCGTACATCCACGCGATCCGGCGCGCCCGCGACTTCGTCTACGTGGAGAACCAGTACTTCCTGGGGAGCTCGTACGCGTGGCGCGGCGGCGAGGGCGGCGTGGCGAGCGTGGAGGGGATCAACGCGCTGCACCTGGTCCCGAGGGAGCTCTCCCTCAAGATCGCGAGCAAGATCGCCGCCGGCGAGCGGTTCGCGGTGTACGTGGTGGTGCCGATGTGGCCGGAGGGCGTGCCGGAGAGCGACTCCGTGCAGGCCATCCTGGACTGGCAGCGGCGCACCATGGAGATGATGTACAGGGACGTGGACGCCGCCATCCAGGCCAAGGGGATCCGCGCCGACCCCACCGACTACCTCAACTTCTTCTGCCTCGGCAACCGCGAGCGCCTCCCCGTCCCCGGCGGCGACAGCTACGAGCCAACGGAGCGCCCCGACCCCGACACCGACTACATGAGGGCGCAGAACGCCCGCCGCTTCATGATCTACGTCCACGCCAAGACGATGATAGGTAATACGGGGTACTCCCTCCATTCTCCTTCCTTCGTTTCACAATGAATCTTGATTGACCGATTCATTAACATTAATATTGAAAATGCTAGAATGACTTATATTATGAAACGAAGAGAGTAAAATATAATCATTTTTAAATTTTTACACGATCTTCGAGATAATAATTTGATAAAAATATTTACAATAGTAAAATATTTTAAATAAACAAAGTTGTATATTATGACAGTTCGTTTAACGATAAATATATAGTAATATCGAATTCATATGATTAATCTTTTTTAATTTTTGTTATTAATATTTAACATTTAAAATGTTTAACTTATCACTATTCTAAAAATGATGTTTATATTTTGCAACGGATGGAGTAATCAATTGATTAATCGATTGACAATCTTAATCAATCTAAGAACATGTCGTCGTGATGCTCTGTTTCTGTTCGATCTATTTGTAGTGGACGACGAGTACATCATCGTGGGGTCGGCGAACATCAACCAGAGGTCGATGGACGGCGGGCGGGACACGGAGATCGCGATGGGCGCGTACCAGCCGAGCCACCTGGCGTCGGTGAACCGGCCGGCGAGGGGCCAGGTGCACGGCTTCCGCCTCGCGCTGTGGCACGAGCACCTGGGCAGGGCGGCGGCGGCGTCGGCCGCCGGCGACCTCCTCCGGCCGTCGAGCCTGGCGTGCGTGTGGCTCGTGAACCAGGCGGCGCGGCGCCACTGGGACGCGTTCGCGAGCGGCGGCGACGACGGCGCGCCGCCAACGGAAGACCTCCCGGGCCACCTGATGGCGTACCCGGTGCGCTGGATGGGCGGCGGCGACGGCAAGCTCGTGGCGGCGACGGAGACGTTCCCGGACACCAAGGCGAAGGTGCTGGGTGCCAAGTCTGACGTGCTCCCGCCCATCCTCACCACATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA012793