BGIOSGA015357

From RiceWiki
Revision as of 16:01, 22 July 2012 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA015357

Description

4-coumarate--CoA ligase-like 9

Definition

Oryza sativa Indica Group BGIOSGA015357, complete gene.

LocusTag

OS04G0310700

Ensembl Transcript ID

BGIOSGA015357-TA

Ensembl Protein ID

BGIOSGA015357-PA

Length

1915

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:12171481..12173395

Sequence Coding Region

12171954..12173395,12171481..12171709

Genome Context

<gbrowseImage1> name=IndicaChromosome04:12171481..12173395 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:12171481..12173395 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGCGACGCCGCGGTACCCGCCATGGTGGTGGAGGAGGAGGAACAGGAGCACGTGTTCCGGAGCAGGTTCCCGCCGGTGGCCGTGCCGGACGGCGTCACCGTGCCGGAGTTCGTGCTGGACGGCGCCGAGGCCTACGCCGACAGGGTGGCGCTCGTGGAGGCCGCGGCGGGCGGGCGGTCGTACACGTACGGCGAGGTGGCGCGCGACACGGCGCGGTTCGCCAGGGCGCTCCGGTCGGTGGGCGTCCGGAAGGGGCACGTCGTCGTCGTCGCGCTCCCAAACCTCGCCGTGTACCCCGTCGTGTCGCTCGGGATCATGTCGGCGGGGGCCGTGTTCTCCGGCGTGAACCCGCGCGCGCTCGCCGCGGAGATCAAGAAGCAGGTGGAGGACTCCGAGGCGAAGCTGGTCGTTGCCAACGAGGTCGCGTTCGACAAGGTGAAGGACGCCGGCGTGCCGGTGATCGGCGTCGGCGACAGGGAGCGGATGCCTGGGGCGATCAGCTGGGACGAGCGCCTCGCCGCGGCCGACCGCACCGGCGCGCCGGTGATGGCGCCGCCGGAGCCCGTACAGCAGTCGGACCTGTGCGCGCTGCCCTACTCGTCCGGCACGACGGGGGTCTCCAAGGGCGTGATGCTGAGCCACCGGAACCTGGTGTCCAGCCTGTGCTCCTCCATGTTCGCCGTCGGCGAGGAGCTCGCCGGGGAGGTCGTCACCCTGGGGCTGATGCCCTTCTTCCACATCTACGGCATCACCGGCATCTGCCTGGCGACGCTCCGGCACAAGGGCACGGTGGTGGTGATGGACCGGTTCGAGCTGCGCGCGTTCCTGCGCGCCCTGGTGGCGCACCGCGTGGCGTTCGCGCCGCTGGTTCCCCCCGTGATGCTCGCCATGGTGAAGAGCCCCGCCGCCGCCGAGCTCGACGTGTCGGCGCTCGCGCTCAGGTCCGTCATGACCGCCGCCGCGCCGCTCGCCCCCGACCTCCTGGCGGCGTTCCGGGACAAGTTCCCCGGCGTGCAGGTGGAGGAAGCCTACGGCCTCACCGAGCACAGCTGCATCACCCTCACGCACGCCGCCGGCGACGGCCACGGCCACGTCGCCAAGAAGAGCTCGGTGGGGTTCATCCTGCCGAACCTGGAGGTGAAGTTCGTGGACCCGGACACCGGGAGGTCGCTGCCGGCGAACACGCCGGGGGAGCTGTGCGTGCGGAGCCAGAGCGTGATGCAGGGGTACTACAAGAGGAAGGAGGAGACGGAGCGCACGGTGGACGGCAAGGGGTGGCTGCACACCGGCGACGTTGGGTACATCGACGGCGACGGCGACGTGTTCATCGTGGACAGGATCAAGGAGCTGATCAAGTACAAGGGGTTTCAGGTCGCCCCCGCCGAGCTCGAGGCCGTCCTCCTCTCCCACCCCTCCGTTGAGGACGCCGCCGTCTTCGGGGTGCCGGACGAGGAGGCCGGCGAGGTGCCGGTGGCGTGCGTGGTGCGGCGGCACGGTGCGGAGGAGGGGGAGGAGGAGATAGTGGCGTACGTGGCGGAGAGGGTGGCGTCGTACAAGCGGGTCCGGGTGCTGCACATCGTCGACGCCATCCCCAAGTCGGTGTCCGGGAAGATCCTGAGGAGGCAGCTTAGGGACGAGTTCATCAAGAGGATGAAACCGTCAGCTTGA</cdnaseq>

Protein Sequence

<aaseq>MGDAAVPAMVVEEEEQEHVFRSRFPPVAVPDGVTVPEFVLDGAEAYADRVALVEAAAGGRSYTYGEVARDTARFARALRSVGVRKGHVVVVALPNLAVYPVVSLGIMSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVANEVAFDKVKDAGVPVIGVGDRERMPGAISWDERLAAADRTGAPVMAPPEPVQQSDLCALPYSSGTTGVSKGVMLSHRNLVSSLCSSMFAVGEELAGEVVTLGLMPFFHIYGITGICLATLRHKGTVVVMDRFELRAFLRALVAHRVAFAPLVPPVMLAMVKSPAAAELDVSALALRSVMTAAAPLAPDLLAAFRDKFPGVQVEEAYGLTEHSCITLTHAAGDGHGHVAKKSSVGFILPNLEVKFVDPDTGRSLPANTPGELCVRSQSVMQGYYKRKEETERTVDGKGWLHTGDVGYIDGDGDVFIVDRIKELIKYKGFQVAPAELEAVLLSHPSVEDAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSVSGKILRRQLRDEFIKRMKPSA</aaseq>

Gene Sequence

<dnaseqindica>1..1442#1687..1915#ATGGGCGACGCCGCGGTACCCGCCATGGTGGTGGAGGAGGAGGAACAGGAGCACGTGTTCCGGAGCAGGTTCCCGCCGGTGGCCGTGCCGGACGGCGTCACCGTGCCGGAGTTCGTGCTGGACGGCGCCGAGGCCTACGCCGACAGGGTGGCGCTCGTGGAGGCCGCGGCGGGCGGGCGGTCGTACACGTACGGCGAGGTGGCGCGCGACACGGCGCGGTTCGCCAGGGCGCTCCGGTCGGTGGGCGTCCGGAAGGGGCACGTCGTCGTCGTCGCGCTCCCAAACCTCGCCGTGTACCCCGTCGTGTCGCTCGGGATCATGTCGGCGGGGGCCGTGTTCTCCGGCGTGAACCCGCGCGCGCTCGCCGCGGAGATCAAGAAGCAGGTGGAGGACTCCGAGGCGAAGCTGGTCGTTGCCAACGAGGTCGCGTTCGACAAGGTGAAGGACGCCGGCGTGCCGGTGATCGGCGTCGGCGACAGGGAGCGGATGCCTGGGGCGATCAGCTGGGACGAGCGCCTCGCCGCGGCCGACCGCACCGGCGCGCCGGTGATGGCGCCGCCGGAGCCCGTACAGCAGTCGGACCTGTGCGCGCTGCCCTACTCGTCCGGCACGACGGGGGTCTCCAAGGGCGTGATGCTGAGCCACCGGAACCTGGTGTCCAGCCTGTGCTCCTCCATGTTCGCCGTCGGCGAGGAGCTCGCCGGGGAGGTCGTCACCCTGGGGCTGATGCCCTTCTTCCACATCTACGGCATCACCGGCATCTGCCTGGCGACGCTCCGGCACAAGGGCACGGTGGTGGTGATGGACCGGTTCGAGCTGCGCGCGTTCCTGCGCGCCCTGGTGGCGCACCGCGTGGCGTTCGCGCCGCTGGTTCCCCCCGTGATGCTCGCCATGGTGAAGAGCCCCGCCGCCGCCGAGCTCGACGTGTCGGCGCTCGCGCTCAGGTCCGTCATGACCGCCGCCGCGCCGCTCGCCCCCGACCTCCTGGCGGCGTTCCGGGACAAGTTCCCCGGCGTGCAGGTGGAGGAAGCCTACGGCCTCACCGAGCACAGCTGCATCACCCTCACGCACGCCGCCGGCGACGGCCACGGCCACGTCGCCAAGAAGAGCTCGGTGGGGTTCATCCTGCCGAACCTGGAGGTGAAGTTCGTGGACCCGGACACCGGGAGGTCGCTGCCGGCGAACACGCCGGGGGAGCTGTGCGTGCGGAGCCAGAGCGTGATGCAGGGGTACTACAAGAGGAAGGAGGAGACGGAGCGCACGGTGGACGGCAAGGGGTGGCTGCACACCGGCGACGTTGGGTACATCGACGGCGACGGCGACGTGTTCATCGTGGACAGGATCAAGGAGCTGATCAAGTACAAGGGGTTTCAGGTCGCCCCCGCCGAGCTCGAGGCCGTCCTCCTCTCCCACCCCTCCGTTGAGGACGCCGCCGTCTTCGGGTAACACCCTTCTTCTTCTTCTTCTCTGACCGTCGAAACTTCAAGAGTTGATTCTGGAGTAAAGTTATGGAGCAATCAAAACCAAGCTTTATATTTCTAGTTTATTTTGTGAGATCATTTCAGCCAGCTTCATTCTAATTTTGTATGGAGTTTAAACTTTTTAGTTGGATTTTAATTTTAAAAAGATGGAATTGTAGATGGAGCTTTTGCCATGTCCTAAAGCCATGCATGCATGGATATGCAGGGTGCCGGACGAGGAGGCCGGCGAGGTGCCGGTGGCGTGCGTGGTGCGGCGGCACGGTGCGGAGGAGGGGGAGGAGGAGATAGTGGCGTACGTGGCGGAGAGGGTGGCGTCGTACAAGCGGGTCCGGGTGCTGCACATCGTCGACGCCATCCCCAAGTCGGTGTCCGGGAAGATCCTGAGGAGGCAGCTTAGGGACGAGTTCATCAAGAGGATGAAACCGTCAGCTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA015357