BGIOSGA016219

From RiceWiki
Revision as of 16:06, 22 July 2012 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA016219

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA016219, complete gene.

LocusTag

OSJNBA0069D17.8

Ensembl Transcript ID

BGIOSGA016219-TA

Ensembl Protein ID

BGIOSGA016219-PA

Length

3282

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:15750931..15754212

Sequence Coding Region

15750931..15754212

Genome Context

<gbrowseImage1> name=IndicaChromosome04:15750931..15754212 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:15750931..15754212 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACAAGGTCGTCGGAATATTGAGGGGAGTAGCTGGTGTTGCTGCTGACGCCAATGCATTCCGTGAATTCTTCCACTGGGTCACACCACACGTCTTAGCTGCCGTACGTTCTCAACAGCAGCAGCAGCTGCTGCAACTGGATTCAGGAGGGCCAGTATCAGCATCAACTGGAAACAACAGAACAGCTCCACTGCATCAGATTCAGGATGATCTTCAGAAACTCGAGCACAACCTTTGGGTGATCCAAACAACTATTACATCCACGATGCATGATCTCATCGACCGCCTTGAGTGGCATAGCCACAGGGAAACAGAAGCCAGGCACCTTCGCCAGATCAAGGATGCAGTGTATGATGCCGAGGACCTCCTTGATGAGTACAATTACTATGCTCTTAAGGTGAAAGTGGAGGCGAGCAAGAACTTGGGGCAAGATCACTCACATGGACCCGTTTTAGAGTTCTTGGACAGTGTCAACTTCAATGGCAACTTCAGCAAAGTGATGGAAATCCAAGACAGACTGAAGCATGTTTTCGACCAATCCATGGGTTTAGGCTTGCACAAAACACCCAAGAAGTTTGATCGATTAGTCAGGCCAGAGACATGCCGTGTCCTTGATGAGTCACAGATATTTGGTCGTGAGCAAGAACTGAAGGAGTTGATGCAAATGCTAGGAGTAGATGGACACAAGAGAGGCAGGCCTGCAGCACACACTAACACTACTGAAGCAAGAAGGATGGAGTTGCCTGTGTTGCCAATAGTTGGCATGGGAGGTGTCGGCAAGACAACTATGGCCCAACAAATCTGTGAGGATCCAGAGGTGCGCAAACATTTTCATCACCGCATAATCTGGATATGTGTCTCAGATGAATTTGAGGTAAACAGGTTAACAAAAGATGCTCTGAAGTCTCTTGGAGTCAAGTCAGAAGATACCGATACAAGGGATAATCTTATGGTTAATTTACGTGATAGTGTCAAGTCAAAGAAGTTTTTGCTCGTCCTTGATGACATGTGGGATGATGTCTTAAAGGATGAGAAAGGATGGAGAACATTTCATAGAACTTTAAGCAATGGTCTTGATGGCAGTATGATTTTGGTCACCACTAGATCTTCCAAGGTTGCTAACTTAGTCAGCGACGGTAATCACTATGAGCTGAAAGGATTGCAAGATGGGGTTTTCTGGAATTTCTTCAAACTATGTGCATTTGGATCTGTCCAGAGTTGGAGCAACAGGCCAGAGTTGCAGCGCATTCGTCCAGAATTGGAGCGCATTGGTAGAGCTATACTTCCCAAGTTGAAGGGTTCACCTTTGGCTGCCAAAACTCTTGGACGATTGTTGAAATGCAACCGAAGCATAGAGCACTGGGAAGACATATTGAAAAGTGAGCTGTGGCGATTAGAACAAGAGGAGACTGACATTTTGCCGGCCCTTCGACTAAGCTATGCGTACCTGCCACAGTACATGAAAAGATGCTTCTCAATCTGTGCTATATATCCAAAGGATCACATATTTCAAAAGGAATTTTTAGCAGACATTTGGGTAGCACAAGGGTATGTGGAGCCTCAAGATGCATCCTCTTGCTTTGATGACCTTGTAAACCGATCCTTCTTTCAGCAAGCAGCCCACCAATATGATAATCAGTATGTAATTCATGATTTGCTACATGATACAGCACAACTAGTCTCTAAGGATGAGTGCTTCATCATACAACATGTAAGTGACCTAGCTAAAATCCCTCCAAAGGTACGCCATCTATCAATATTCACTAATGGAAATATCAGATGTTCAGATTTACTGTATATTTGCGCACAAAATAAAAAATTGCGTTCCCTAGTATGCAATGATTCTTACATAAATTGGGAACCTTTTGCTCCCATGATTGACGGTTGGTTCAAGGAACTTTTGAATATCCGTGTATTGAGTTTTGATCTTTCGACTGTCAGAAAGCTACCTGAGAGCATAGGCAACTCAATACATTTGCGCTACCTTGGTTTATTAGGAAATTCTACTTTTGAGACCCTTCCTTCATCTGTTAGCTGCCTGTATCATGTCCAGACTATAAATGCCAAGGGTTGTGTTTTCAAAAGATATCCTCAAGGTTTTAGTGATCTTATTTCCTTAAAGAAAATTGAATCAAAGGGCTTCATATATAATAAGGATAAAGATAAGCAATGCCTAAGGTGGCCCATAATGCAAACACCTGACAGGGGCGAAGCCAGAACAAGGCTGAGCCCCCCCTATGCTCCAAACCTGGCTCTGCCACTGACACCTGAAGAACAGTTACAGATGACAGAGGAGCAGATTGAATTGTTACCTCATTGGAACCTTCAGCATTTGACAATAGAGTATTACCTGGGTCAATCTTGCCCCAGTTGGCTCCGGCCAGACTGCCTGAAAATGCTGACTTCACTTAAACTTTCTTATTGCAAGAACATTCAGAGCATATCATTCTTTGACCCACTCTTTCCTGATTCGGAAGATTCAAAGAACATTTGTCACCTTGAGGTGTTGGATATCCAACATTGTCCTAACATCAATTGGCAAGGTTTGGTGGCTTTACCTTCTTCTCTTAGAAAGATTATCCTTGGAAACTTTGGCCATTCGACGGATCACTTTGTGAGTTGCTTTTGTGGCCTCGCTCTCCTGAAATGTCTGCAAATACAGTGTGAATTCTTAATGTCTATTCCCCTGCAAGTTTGTAAAAATAATCTTCAAGCCTTGGAGGATTTGCATATTTATCAGTGTAGCTCCCTCACATCCATCTATGTCTCAGAGGCAAGCAGCAGGCACCCTGTTGGAGTATTTTCATCCCTTTCAAGTGTCACCATTTCTCTTTGCAATGCACTGTTGAGTCTTGATGAGTTCCTGATGCCTGCTTATATGCCCGTCGTGAAGACCATTCTTGTGGAAAGTTGTCGACAATTAGCATTACTGCCGATTGATGAGCTTCATCGCTTTTCTTGCTTGGAGGTGCTACGTATTGAATCATGTCCCAATTTGAATACACGGAGGATAATGACATTACCATCCTCTCTTCGGAAGCTCAGTTTACTCGGTTGTCCAAGCATAGAGTTCATCGACAACAGCCATCTGGCGAGTTCTGTGACACTCAAGGGACTCAACCTGAAACTTATTAGCTGTCCAGACCTCATCTCTATTGTTGGTGCTATATCTGTCTCTGAAATACAGTCGGGTTATATACATGATTGCCCCAAGCTGATGGAGATGACACAGCCTTTCACAAGAGGTCGCTACTGGTACGTGCTAAGGAATCACACTTGA</cdnaseq>

Protein Sequence

<aaseq>MDKVVGILRGVAGVAADANAFREFFHWVTPHVLAAVRSQQQQQLLQLDSGGPVSASTGNNRTAPLHQIQDDLQKLEHNLWVIQTTITSTMHDLIDRLEWHSHRETEARHLRQIKDAVYDAEDLLDEYNYYALKVKVEASKNLGQDHSHGPVLEFLDSVNFNGNFSKVMEIQDRLKHVFDQSMGLGLHKTPKKFDRLVRPETCRVLDESQIFGREQELKELMQMLGVDGHKRGRPAAHTNTTEARRMELPVLPIVGMGGVGKTTMAQQICEDPEVRKHFHHRIIWICVSDEFEVNRLTKDALKSLGVKSEDTDTRDNLMVNLRDSVKSKKFLLVLDDMWDDVLKDEKGWRTFHRTLSNGLDGSMILVTTRSSKVANLVSDGNHYELKGLQDGVFWNFFKLCAFGSVQSWSNRPELQRIRPELERIGRAILPKLKGSPLAAKTLGRLLKCNRSIEHWEDILKSELWRLEQEETDILPALRLSYAYLPQYMKRCFSICAIYPKDHIFQKEFLADIWVAQGYVEPQDASSCFDDLVNRSFFQQAAHQYDNQYVIHDLLHDTAQLVSKDECFIIQHVSDLAKIPPKVRHLSIFTNGNIRCSDLLYICAQNKKLRSLVCNDSYINWEPFAPMIDGWFKELLNIRVLSFDLSTVRKLPESIGNSIHLRYLGLLGNSTFETLPSSVSCLYHVQTINAKGCVFKRYPQGFSDLISLKKIESKGFIYNKDKDKQCLRWPIMQTPDRGEARTRLSPPYAPNLALPLTPEEQLQMTEEQIELLPHWNLQHLTIEYYLGQSCPSWLRPDCLKMLTSLKLSYCKNIQSISFFDPLFPDSEDSKNICHLEVLDIQHCPNINWQGLVALPSSLRKIILGNFGHSTDHFVSCFCGLALLKCLQIQCEFLMSIPLQVCKNNLQALEDLHIYQCSSLTSIYVSEASSRHPVGVFSSLSSVTISLCNALLSLDEFLMPAYMPVVKTILVESCRQLALLPIDELHRFSCLEVLRIESCPNLNTRRIMTLPSSLRKLSLLGCPSIEFIDNSHLASSVTLKGLNLKLISCPDLISIVGAISVSEIQSGYIHDCPKLMEMTQPFTRGRYWYVLRNHT</aaseq>

Gene Sequence

<dnaseqindica>1..3282#ATGGACAAGGTCGTCGGAATATTGAGGGGAGTAGCTGGTGTTGCTGCTGACGCCAATGCATTCCGTGAATTCTTCCACTGGGTCACACCACACGTCTTAGCTGCCGTACGTTCTCAACAGCAGCAGCAGCTGCTGCAACTGGATTCAGGAGGGCCAGTATCAGCATCAACTGGAAACAACAGAACAGCTCCACTGCATCAGATTCAGGATGATCTTCAGAAACTCGAGCACAACCTTTGGGTGATCCAAACAACTATTACATCCACGATGCATGATCTCATCGACCGCCTTGAGTGGCATAGCCACAGGGAAACAGAAGCCAGGCACCTTCGCCAGATCAAGGATGCAGTGTATGATGCCGAGGACCTCCTTGATGAGTACAATTACTATGCTCTTAAGGTGAAAGTGGAGGCGAGCAAGAACTTGGGGCAAGATCACTCACATGGACCCGTTTTAGAGTTCTTGGACAGTGTCAACTTCAATGGCAACTTCAGCAAAGTGATGGAAATCCAAGACAGACTGAAGCATGTTTTCGACCAATCCATGGGTTTAGGCTTGCACAAAACACCCAAGAAGTTTGATCGATTAGTCAGGCCAGAGACATGCCGTGTCCTTGATGAGTCACAGATATTTGGTCGTGAGCAAGAACTGAAGGAGTTGATGCAAATGCTAGGAGTAGATGGACACAAGAGAGGCAGGCCTGCAGCACACACTAACACTACTGAAGCAAGAAGGATGGAGTTGCCTGTGTTGCCAATAGTTGGCATGGGAGGTGTCGGCAAGACAACTATGGCCCAACAAATCTGTGAGGATCCAGAGGTGCGCAAACATTTTCATCACCGCATAATCTGGATATGTGTCTCAGATGAATTTGAGGTAAACAGGTTAACAAAAGATGCTCTGAAGTCTCTTGGAGTCAAGTCAGAAGATACCGATACAAGGGATAATCTTATGGTTAATTTACGTGATAGTGTCAAGTCAAAGAAGTTTTTGCTCGTCCTTGATGACATGTGGGATGATGTCTTAAAGGATGAGAAAGGATGGAGAACATTTCATAGAACTTTAAGCAATGGTCTTGATGGCAGTATGATTTTGGTCACCACTAGATCTTCCAAGGTTGCTAACTTAGTCAGCGACGGTAATCACTATGAGCTGAAAGGATTGCAAGATGGGGTTTTCTGGAATTTCTTCAAACTATGTGCATTTGGATCTGTCCAGAGTTGGAGCAACAGGCCAGAGTTGCAGCGCATTCGTCCAGAATTGGAGCGCATTGGTAGAGCTATACTTCCCAAGTTGAAGGGTTCACCTTTGGCTGCCAAAACTCTTGGACGATTGTTGAAATGCAACCGAAGCATAGAGCACTGGGAAGACATATTGAAAAGTGAGCTGTGGCGATTAGAACAAGAGGAGACTGACATTTTGCCGGCCCTTCGACTAAGCTATGCGTACCTGCCACAGTACATGAAAAGATGCTTCTCAATCTGTGCTATATATCCAAAGGATCACATATTTCAAAAGGAATTTTTAGCAGACATTTGGGTAGCACAAGGGTATGTGGAGCCTCAAGATGCATCCTCTTGCTTTGATGACCTTGTAAACCGATCCTTCTTTCAGCAAGCAGCCCACCAATATGATAATCAGTATGTAATTCATGATTTGCTACATGATACAGCACAACTAGTCTCTAAGGATGAGTGCTTCATCATACAACATGTAAGTGACCTAGCTAAAATCCCTCCAAAGGTACGCCATCTATCAATATTCACTAATGGAAATATCAGATGTTCAGATTTACTGTATATTTGCGCACAAAATAAAAAATTGCGTTCCCTAGTATGCAATGATTCTTACATAAATTGGGAACCTTTTGCTCCCATGATTGACGGTTGGTTCAAGGAACTTTTGAATATCCGTGTATTGAGTTTTGATCTTTCGACTGTCAGAAAGCTACCTGAGAGCATAGGCAACTCAATACATTTGCGCTACCTTGGTTTATTAGGAAATTCTACTTTTGAGACCCTTCCTTCATCTGTTAGCTGCCTGTATCATGTCCAGACTATAAATGCCAAGGGTTGTGTTTTCAAAAGATATCCTCAAGGTTTTAGTGATCTTATTTCCTTAAAGAAAATTGAATCAAAGGGCTTCATATATAATAAGGATAAAGATAAGCAATGCCTAAGGTGGCCCATAATGCAAACACCTGACAGGGGCGAAGCCAGAACAAGGCTGAGCCCCCCCTATGCTCCAAACCTGGCTCTGCCACTGACACCTGAAGAACAGTTACAGATGACAGAGGAGCAGATTGAATTGTTACCTCATTGGAACCTTCAGCATTTGACAATAGAGTATTACCTGGGTCAATCTTGCCCCAGTTGGCTCCGGCCAGACTGCCTGAAAATGCTGACTTCACTTAAACTTTCTTATTGCAAGAACATTCAGAGCATATCATTCTTTGACCCACTCTTTCCTGATTCGGAAGATTCAAAGAACATTTGTCACCTTGAGGTGTTGGATATCCAACATTGTCCTAACATCAATTGGCAAGGTTTGGTGGCTTTACCTTCTTCTCTTAGAAAGATTATCCTTGGAAACTTTGGCCATTCGACGGATCACTTTGTGAGTTGCTTTTGTGGCCTCGCTCTCCTGAAATGTCTGCAAATACAGTGTGAATTCTTAATGTCTATTCCCCTGCAAGTTTGTAAAAATAATCTTCAAGCCTTGGAGGATTTGCATATTTATCAGTGTAGCTCCCTCACATCCATCTATGTCTCAGAGGCAAGCAGCAGGCACCCTGTTGGAGTATTTTCATCCCTTTCAAGTGTCACCATTTCTCTTTGCAATGCACTGTTGAGTCTTGATGAGTTCCTGATGCCTGCTTATATGCCCGTCGTGAAGACCATTCTTGTGGAAAGTTGTCGACAATTAGCATTACTGCCGATTGATGAGCTTCATCGCTTTTCTTGCTTGGAGGTGCTACGTATTGAATCATGTCCCAATTTGAATACACGGAGGATAATGACATTACCATCCTCTCTTCGGAAGCTCAGTTTACTCGGTTGTCCAAGCATAGAGTTCATCGACAACAGCCATCTGGCGAGTTCTGTGACACTCAAGGGACTCAACCTGAAACTTATTAGCTGTCCAGACCTCATCTCTATTGTTGGTGCTATATCTGTCTCTGAAATACAGTCGGGTTATATACATGATTGCCCCAAGCTGATGGAGATGACACAGCCTTTCACAAGAGGTCGCTACTGGTACGTGCTAAGGAATCACACTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA016219