BGIOSGA016256

From RiceWiki
Revision as of 16:07, 22 July 2012 by 124.16.129.48 (talk)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA016256

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA016256, complete gene.

LocusTag

OSJNBA0072D21.14

Ensembl Transcript ID

BGIOSGA016256-TA

Ensembl Protein ID

BGIOSGA016256-PA

Length

4915

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:16358029..16362943

Sequence Coding Region

16358029..16358247,16358728..16358901,16358996..16359310,16360043..16361821,16362587..16362943

Genome Context

<gbrowseImage1> name=IndicaChromosome04:16358029..16362943 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:16358029..16362943 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTACCAGTGGCGCAAGTTCGAGTTCTTCGAGGAGAAGGCGGCCGGGCGGGGCGTGCCCGGCGAGATCGCCTCCCGCGTCAGCTGCTGCTCCGGCGGCCGCGGCCGCGTCGCCGTCGGCTGCGACGACGGCACGGTGGGGCTCCTTGACCGCGGGTTCCGCCTCTCCTACGGCTTCCAGGCCTACGCCTCCTCCGTCCTCTTCCTCCAGCAGCTCAAGCAAAGGAATGTTCTTATCACGGTTGGCGATGATGATCAGCCATCTTCACTATCGTCAGCAATCTGTCTAAAAGTTTTCGATCTTGATAAAGTACAAGAAGAAGGTTCAAGTACAACAAGTCCTTTCTGTGTTCAAATTTTGCGCATCTTCACTAAGCAATTTCCTCAGGCAAAGATTACATCTTTTGTGGTTCTAGAAGAAGCACCTCCTATACTGCTAATTGCGATTGGACTGGACAATGGTTCCATTTATTGCATCAAAGGTGACATCGCACGTGAGCGTATCACGCGATTCATGTTGCAAGTCGAGGATGGCACCAGTTTACCTATTACTGGTCTTGGTTTCCGAGTTGAGGGGCAAGCACACCAGTTATTTGCTGTAACTCCTAGTTCAATAACCTTGTTTAGCTTGCATGATCATCCACCGAGGAGGCAAACGCTTGATCAGATTGGTTGTGAGACCAATGCTGTGGCGATGAGTGACCGCATGGATCTTATTATTGGTAGACCTGAAGCTGTGTATTTCTATGAAATTGATGGTAGAGGTCCTTGCTGGGCCTTTGATGGTGAGAAAAAGTTTGTTGGATGGTTTCGGGGCTATTTACTATGCATTATTGAAGATCAGAGGAGCCGGAAGAATACTCTTAATGTATATGATCTTAAGAATCGGTTGATTGCACATAGCATGCCAGTGGGGGATGTTTCACACTTGGTCTCTGAGTGGGGATATATTATTCTGATAATGAGCGATAAAAAGATTCTTTGCATTGGAGAGAAAGATATGGAGAGTAAGCTTGATATGTTGTTTAAGAAAAATCTGTATACAGTCGCAATCAATCTTGTACAAAGTCAACAGGCCGATCCTGCTTCAACTGCTGAGGTTCTAAGGAAGTATGGTGACCATCTCTATGGAAAACAGGAATATGATGAGGCCATGTCCCAATATATCCACACCATTGGCCATCTTGAACCATCATATGTTATACAGAAGTTCCTTGATGCAAAACGCATCTACAATCTCACAAACTATTTAGAGAAGTTACATGATCGAGGGTTAGCATCCAAAGACCACACCACCCTTCTGTTGAATTGCTATACTAAACTGAAAGATGTGGAGAAGCTTAACCATTTCATCAAAGATGAAGATGGGGTAGGTGAAATCAAGTTTGATGTGGAAACTGCCATAAGAGTATGTCGTGCAGCTGGATATCATGAGCATGCTATGTTTGTTGCCAAAAAGGCTGGGAGGCATGAGTTGTATTTGAAAATTTTACTGGAGGATCTTGGTAGATATGATGAGGCACTGCAGTATATATCTAGCCTTGAGGCGAATCAAGCAGGTCTTACTGTAAAAGAGTATGGGAAAATTCTTGTGGAGCATAGACCTGCTGAAACAGTTGAAATACTGTTGAGACTCTGTACAGATGGTGGAGATCCTATGACAAGAAGAGGTTCAAATAGCATGCATTTGCTTATGATACCTTCTCCAATGGACTTTGTAAACATATTTGTACACAGCCCGAAACATCTCATGGAATTTCTAGAGAATTATACCAAAGCAGTAAAGGACTCACCTGCTCAAACAGAAATTCATAACACCCTTCTGGAGTTATATATATCAAAAGATTTAAGTTTCCCTTCTATGTCACAAGAAAATGGCTTTGAGGAGCAGAATAGTAAGGAAAGAAAAGGTAAAGAAGTTGCAAATGGCTATAAATCTGGCCCAAGGGAGAAAGGAAATCTGGGAAAGGAAGATATGAATGTCGCAAAGGATATTGTTGATAGGCAAAGGAAAGGGCTTGCATTGCTCAAGTCTGCATGGACATCTGAGATGGATGATCCTCTGTATGATGTTGATCTTGCTCTTATCATCTGTAATGCAAATGCATTCAAAGATGGGCTATTGTTTCTGTATGAGAAACTAAAACTATTCAAAGAAGTTATTAGTTGCTACAAGCAAGCTCATGATCACGAGGGTCTAATTGCCTGCTGTAAGAAGCTAGGAGATTCATCTCAAGGTGGGGATCCATCTCTTTGGGGTGATCTGTTGAAATATTTTAGTGAGCTTGGGGAAGATTGCTCTAAAGAGGTCAAGGAGGTATTGACCTATATTGAAAAGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCCATGCTTGACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAAGCTAATCGAAGAAGATAGGAAATCTATTGACAAGTACCAGGATGAGACAGAACTGATGAAAAGGGAGATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGGCGTGCACCTTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGCCTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAGGCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCAGCTGAGGGGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAAACAGCCATTCCTCCTGAAAATGGCCGATAA</cdnaseq>

Protein Sequence

<aaseq>MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDGTVGLLDRGFRLSYGFQAYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPFCVQILRIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQVEDGTSLPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQTLDQIGCETNAVAMSDRMDLIIGRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNVYDLKNRLIAHSMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADPASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLTNYLEKLHDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRAAGYHEHAMFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGGDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQTEIHNTLLELYISKDLSFPSMSQENGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMNVAKDIVDRQRKGLALLKSAWTSEMDDPLYDVDLALIICNANAFKDGLLFLYEKLKLFKEVISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKEDVLPPIVVLETLSKNPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIEDLKTNAKVFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAKQKLEHNARDHDLFFRQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR</aaseq>

Gene Sequence

<dnaseqindica>1..219#700..873#968..1282#2015..3793#4559..4915#ATGTACCAGTGGCGCAAGTTCGAGTTCTTCGAGGAGAAGGCGGCCGGGCGGGGCGTGCCCGGCGAGATCGCCTCCCGCGTCAGCTGCTGCTCCGGCGGCCGCGGCCGCGTCGCCGTCGGCTGCGACGACGGCACGGTGGGGCTCCTTGACCGCGGGTTCCGCCTCTCCTACGGCTTCCAGGCCTACGCCTCCTCCGTCCTCTTCCTCCAGCAGCTCAAGGTACTGGGATAGTGGGATCCCTTTCAGGATTCAATTCTCCGGTAGATTTGCTTCCGGTGTTGTCTATCGTGCTGGATCCTGTATAGTTAGGGGGTAAAAGAAGCCATTGATATGTAATCGATCACTAATTTTGACTTGTGAGTAGCGGGCGCACTCTCCTACGACCCTGAACAATGCGAGACATTTTTGTATACAATTTGCAAGTAACTTGTTGAATCATTTGGTTCTCTGAGGCTTAGGGTCAGGGTTTGAAGAATAAAATTTCGGTTGCTGATAGTTTTGCAAGTACCATTAGTTGTTTCTTTTAGTCTTAATGTCTTATAGACAAAATGGCTTTCTTTTCTTTTCTCACTAATATGCCTGCTAAATATGTACTGGTTGTTAGTATTATTTTTAATGCCTTCTTGTGTATTGCATTTACTAATTGCATTGTTTTATCATGATAATAGAAGCTAACTGTGGTATTTAACAACTGAGCAGCAAAGGAATGTTCTTATCACGGTTGGCGATGATGATCAGCCATCTTCACTATCGTCAGCAATCTGTCTAAAAGTTTTCGATCTTGATAAAGTACAAGAAGAAGGTTCAAGTACAACAAGTCCTTTCTGTGTTCAAATTTTGCGCATCTTCACTAAGCAATTTCCTCAGGCAAAGGTAAATTCTCCTGCGAAATTTTGTGTCTATGTTATGTACTTAACATCCTTTTTCTAGCTCTAATCTAATTATCATGTATTGCGGACCATTTCAGATTACATCTTTTGTGGTTCTAGAAGAAGCACCTCCTATACTGCTAATTGCGATTGGACTGGACAATGGTTCCATTTATTGCATCAAAGGTGACATCGCACGTGAGCGTATCACGCGATTCATGTTGCAAGTCGAGGATGGCACCAGTTTACCTATTACTGGTCTTGGTTTCCGAGTTGAGGGGCAAGCACACCAGTTATTTGCTGTAACTCCTAGTTCAATAACCTTGTTTAGCTTGCATGATCATCCACCGAGGAGGCAAACGCTTGATCAGATTGGTTGTGAGACCAATGCTGTGGCGATGAGTGACCGCATGGTAAGGATGTCATCTTCTGTTTTTGTTCATGTTTGTCTGTCGTTCCCCTCTAATCATATAGTTATACACATGTTGTTCAAAATCTGCTTGCAACTCTCTGATTTAGGGCTTGTTTGGTAATCTGACCCAACTTACCCATGATACTTTGTGTAGTTTTCTGATAAGCTAATGTGTTCCTGGAAAAATATGGGATCCTCAGCCTCACATTTGCTGCAAAAAATTGCATGCGAATTGTGGTGACTGACTAACCATACACTTGCCACCATCCCCTATGTTATATGGAAGTTATGTATGTATCTCTTCTCATCACAGACTGACAGCCTTAAGTAAAGTCAAGGCAAAGGCACATACACTAATCATACTAAAGTAAAATTAGTCTGACCAAGTTTAACTAAGGGATAGATGCAGCTAACTTAGCTCTGCGGCTAACCAAAATCAATATGTAGCTTGACTCTTGTGATGCAAAGTCTAGATCCCTTTGTGACTGCCTGTTTTCCCTGCCTTGTGGCTGCTCGAAACCACCTCAGTGTACAATTGTGAAATAATGCATAGGAAAATTGGCACTAACCATGTAGACCCATAATAGATTATAGTTTATTGCAAGCTAGCTACAAGACATGGGTCTCTCCACATGCATTTGATTATTGCATTCATGCCTGTGCTGTTCCCAGTACATTTTTCACTAGGATCTTGGTGAAATGCAATCCTTATGTCCATCTATCGTCTATACAGGATCTTATTATTGGTAGACCTGAAGCTGTGTATTTCTATGAAATTGATGGTAGAGGTCCTTGCTGGGCCTTTGATGGTGAGAAAAAGTTTGTTGGATGGTTTCGGGGCTATTTACTATGCATTATTGAAGATCAGAGGAGCCGGAAGAATACTCTTAATGTATATGATCTTAAGAATCGGTTGATTGCACATAGCATGCCAGTGGGGGATGTTTCACACTTGGTCTCTGAGTGGGGATATATTATTCTGATAATGAGCGATAAAAAGATTCTTTGCATTGGAGAGAAAGATATGGAGAGTAAGCTTGATATGTTGTTTAAGAAAAATCTGTATACAGTCGCAATCAATCTTGTACAAAGTCAACAGGCCGATCCTGCTTCAACTGCTGAGGTTCTAAGGAAGTATGGTGACCATCTCTATGGAAAACAGGAATATGATGAGGCCATGTCCCAATATATCCACACCATTGGCCATCTTGAACCATCATATGTTATACAGAAGTTCCTTGATGCAAAACGCATCTACAATCTCACAAACTATTTAGAGAAGTTACATGATCGAGGGTTAGCATCCAAAGACCACACCACCCTTCTGTTGAATTGCTATACTAAACTGAAAGATGTGGAGAAGCTTAACCATTTCATCAAAGATGAAGATGGGGTAGGTGAAATCAAGTTTGATGTGGAAACTGCCATAAGAGTATGTCGTGCAGCTGGATATCATGAGCATGCTATGTTTGTTGCCAAAAAGGCTGGGAGGCATGAGTTGTATTTGAAAATTTTACTGGAGGATCTTGGTAGATATGATGAGGCACTGCAGTATATATCTAGCCTTGAGGCGAATCAAGCAGGTCTTACTGTAAAAGAGTATGGGAAAATTCTTGTGGAGCATAGACCTGCTGAAACAGTTGAAATACTGTTGAGACTCTGTACAGATGGTGGAGATCCTATGACAAGAAGAGGTTCAAATAGCATGCATTTGCTTATGATACCTTCTCCAATGGACTTTGTAAACATATTTGTACACAGCCCGAAACATCTCATGGAATTTCTAGAGAATTATACCAAAGCAGTAAAGGACTCACCTGCTCAAACAGAAATTCATAACACCCTTCTGGAGTTATATATATCAAAAGATTTAAGTTTCCCTTCTATGTCACAAGAAAATGGCTTTGAGGAGCAGAATAGTAAGGAAAGAAAAGGTAAAGAAGTTGCAAATGGCTATAAATCTGGCCCAAGGGAGAAAGGAAATCTGGGAAAGGAAGATATGAATGTCGCAAAGGATATTGTTGATAGGCAAAGGAAAGGGCTTGCATTGCTCAAGTCTGCATGGACATCTGAGATGGATGATCCTCTGTATGATGTTGATCTTGCTCTTATCATCTGTAATGCAAATGCATTCAAAGATGGGCTATTGTTTCTGTATGAGAAACTAAAACTATTCAAAGAAGTTATTAGTTGCTACAAGCAAGCTCATGATCACGAGGGTCTAATTGCCTGCTGTAAGAAGCTAGGAGATTCATCTCAAGGTGGGGATCCATCTCTTTGGGGTGATCTGTTGAAATATTTTAGTGAGCTTGGGGAAGATTGCTCTAAAGAGGTCAAGGAGGTATTGACCTATATTGAAAAGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAGACATTGTCGAAAAACCCATGCTTGACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTGAGCAAGAATCAAAGCTAATCGAAGAAGATAGGAAATCTATTGACAAGTACCAGGTTGGCAATTTAACTGTGCTACCTTTTTCCTTGCAGCTTTTACAATAGTTGGGAGAAGGAATTGGTATCCATTAATAGTTTAGTTTGCTGCAACATAAGATTGAAAAGCCTTCCTCTATTGCTGCTAGATACAATACAAAACATGTTCAAGCCAAAAAAAACAAATATTAGAGGATTTTTTGTTCATATATTTCACTAAAATATGTTTGAGCTGTCATACTTGATATAGTCATTAAATTATTTTCATACAGTTTTGTACTCTGTATAGTCAATGTCCTAAACTTTGTAGTTAGATGTGGCTGTTGCACAGCTATTGGCATGTGGTCTCACAAGGTGCCTTTCCATGTGATGAACCTTTGTATGGATATACTTAAACACTAGATTTCAGTTGAAATGTGTTTCAGGACAAATTTGTTTTAATTTACTGAGTTCAGCAATTTGTTTTGCATCACACATTCCATGTGTATGTTGTCTCTCAGTTAGTCAGTTTGATGACCTTAGAATTTATTTAATCATGCAGTGTAGCATGATTAACCAGCTGTTGGAGTGTTGATACACACTTTGCACCACGGGTTACTTTTTGTGTGTAATATATATTTGAGTTGACATAATTACCATGATAAATAATTTGTTAGCGCTTAACAATGATGAGTGCCATCCTTTATTTGGAAAGATGACAGAAAACGTTACTAAATCCCAGCAACAACCTACATAGAAACGATAACAAATAGATAACTATTGATAACATCTTTTTTGTTTATACAGGATGAGACAGAACTGATGAAAAGGGAGATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACGGCGTGCACCTTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGCCTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTGTCATGGAGGCAAAGCAGAAGCTAGAACATAACGCTAGAGACCATGATCTCTTCTTCAGGCAGCTGAGGGGTTCAAAGGATGGCTTCTCTGTCGTCGCAGACTATTTTAGCAAGGGCATTGTGAGTAAAACAGCCATTCCTCCTGAAAATGGCCGATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA016256