ScienceWikis - User contributions [en]

ScienceWikis:Participants

2017-09-11T01:59:37Z

Zhang Zhang: /* Steering Committee */

==Steering Committee==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jun Yu (Beijing Institute of Genomics, Chinese Academy of Sciences)

==Bioinformatics Team==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jingfa Xiao (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jiayan Wu (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Xumin Wang (Beijing Institute of Genomics, Chinese Academy of Sciences)

==Software Development Team==

* Lin Dai (Beijing Institute of Technology)

* Zhong Jing (Supercomputing Center, Computer Network Information Center, Chinese Academy of Sciences)

Main Page

2017-06-29T16:45:42Z

Zhang Zhang:

__NOTITLE__
__NOTOC__
__NOEDITSECTION__

{|style="width:100%; margin-top:10px; background-color:#f6f6f6; border:1px solid #ccc; margin-bottom: 10px;"
|style="width:65%; text-align:center; white-space:nowrap; color:#000"|
<div style="font-size:200%; border:none; margin:0; padding:.5em; color:#000;">Welcome to ScienceWikis</div>
<div style="top:+0.2em; font-size:100%; color:#492">'''Contribute your efforts, further our knowledge.'''</div>
|}

{{ScienceWikis:Summary}}

==Purpose & Aims==
{{ScienceWikis:Purpose}}

==Biological Wikis==

{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
|-

|style="padding:0px 2px;"|
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:20%"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://icg.big.ac.cn '''ICG'''] </div>
<div style="font-size:105%;text-align:center;">
A knowledgebase of Internal Control Genes for RT-qPCR normalization<br><br>
</div>
|style="padding:0px 2px;"|

|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:20%"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:135%;text-align:center; font-weight:bold;">[http://lncrna.big.ac.cn/index.php/Main_Page '''LncRNAWiki''']</div>
<div style="font-size:105%;text-align:center;">
A wiki-based database for community curation of human long non-coding RNAs<br><br>
</div>

|style="padding:0px 2px;"|
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:20%"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://wiki.ic4r.org/index.php/Main_Page '''RiceWiki'''] </div>
<div style="font-size:105%;text-align:center;">
A community-curated knowledgebase for the rice research community<br><br>
</div>
|style="padding:0px 2px;"|
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://www.wikicell.org/ '''WikiCell'''] </div>
<div style="font-size:105%;text-align:center;">
A portal for a unified view of the human transcriptome<br><br>
</div>
|style="padding:0px 2px;"|
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://esnd.big.ac.cn/index.php/Main_Page '''ESND'''] </div>
<div style="font-size:105%;text-align:center;">
A wiki-based English-to-Chinese Scientific Nomenclature Dictionary<br><br>
</div>
|}
==Wiki extensions==
{{:Wiki_Extensions}}
==Publications==
<div style="padding:0.5em 1em;font-size:110%">
*'''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs.''' ''Nucleic Acids Research''(2015), 43:D187-92. [http://www.ncbi.nlm.nih.gov/pubmed/25399417 PMID=25399417]
*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
*'''WikiCell: a unified resource platform for human transcriptomics research.''' ''Omics: a journal of integrative biology'' (2012),16.6:357-362. [http://www.ncbi.nlm.nih.gov/pubmed/22702248 PMID=22702248]
*'''Community intelligence in knowledge curation: an application to managing scientific nomenclature.''' ''PloS one'' (2013), 8.2:e56961.[http://www.ncbi.nlm.nih.gov/pubmed/23451119 PMID=23451119]
*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
</div>

Main Page

2014-08-15T15:50:25Z

Zhang Zhang:

Main Page

2014-08-15T15:50:09Z

Zhang Zhang:

ScienceWikis:Participants

2013-11-12T02:28:03Z

Zhang Zhang: /* Steering Committee */

==Steering Committee==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jun Yu (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jeffrey P. Townsend (Yale University)

* Dan Bolser (EMBL-EBI)

==Bioinformatics Team==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jingfa Xiao (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jiayan Wu (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Xumin Wang (Beijing Institute of Genomics, Chinese Academy of Sciences)

==Software Development Team==

* Lin Dai (Beijing Institute of Technology)

* Zhong Jing (Supercomputing Center, Computer Network Information Center, Chinese Academy of Sciences)

Main Page

2013-08-08T02:22:02Z

Zhang Zhang:

Main Page

2013-08-08T02:21:08Z

Zhang Zhang:

ScienceWikis:Summary

2013-08-08T02:18:01Z

Zhang Zhang:

'''ScienceWikis''' is a catalog of biological knowledge wikis and wiki extensions, aiming to exploit the full potential of wiki technology to harness community intelligence in knowledge integration and curation.

ScienceWikis:Purpose

2013-08-08T02:17:43Z

Zhang Zhang:

* Build professional academic wikis for biological knowledge integration and curation (such as, wiki-based gene annotation system).

* Measure users' contributions, give explicit authorship and provide a standard practice to reward community-curated efforts in bio-wikis.

* Provide a central archive of quantitative contributions and citations in different bio-wikis.

* Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

Biological Wikis

2013-07-15T08:05:33Z

Zhang Zhang:

{| class="wikitable sortable"
|-
! scope="col" align="left"| Name
! scope="col" align="left"| Description
! scope="col" align="left"| Availability
! scope="col"| MediaWiki-based
! scope="col"| Reference
! scope="col"| Powered By AuthorReward
|-
|959 Nematode Genomes
|A semantic wiki for coordinating sequencing projects
|http://www.nematodegenomes.org
|align="center"|Yes
|align="center"|[1]
|align="center"|No
|-
|ArrayWiki
|A community-maintained system for sharing public microarray data repositories and meta-analyses
|http://arraywiki.bme.gatech.edu
|align="center"|Yes
|align="center"|[2]
|align="center"|No
|-
|BOWiki
|An ontology-based wiki for annotation of data and integration of knowledge
|http://www.bowiki.net
|align="center"|No
|align="center"|[3]
|align="center"|No
|-
|EcoliWiki
|A wiki-based community resource for Escherichia coli
|http://ecoliwiki.net
|align="center"|Yes
|align="center"|[4]
|align="center"|No
|-
|ESND
|A wiki-based English-to-Chinese scientific nomenclature dictionary
|http://esnd.big.ac.cn
|align="center"|Yes
|align="center"|[5]
|align="center"|No
|-
|Gene Wiki
|A wiki harnessing community intelligence to the annotation of human gene and protein function
|http://en.wikipedia.org/wiki/Portal:Gene_Wiki
|align="center"|Yes
|align="center"|[6]
|align="center"|No
|-
|GONUTS
|A community-based browser and usage guide for Gene Ontology (GO) terms and a community system for general GO annotation of proteins
|http://gowiki.tamu.edu
|align="center"|Yes
|align="center"|[7]
|align="center"|No
|-
|MetaBase
|A community-curated database of commonly used biological databases
|http://www.metadatabase.org
|align="center"|Yes
|align="center"|[8]
|align="center"|No
|-
|PDBWiki
|A community annotated knowledge base of biological molecular structures
|http://www.pdbwiki.org
|align="center"|Yes
|align="center"|[9]
|align="center"|No
|-
|Proteopedia
|A scientific wiki bridging the rift between three-dimensional structure and function of biomacromolecules
|http://www.proteopedia.org
|align="center"|Yes
|align="center"|[10]
|align="center"|No
|-
|Rfam
|A community-derived annotation of RNA families
|http://rfam.sanger.ac.uk
|align="center"|Yes
|align="center"|[11]
|align="center"|No
|-
|RiceWiki
|A wiki-based, publicly editable and open-content platform for community annotation of rice genes
|http://ricewiki.big.ac.cn
|align="center"|Yes
|align="center"|Submitted
|align="center"|Yes
|-
|SEQanswers Wiki
|A wiki database of tools for high-throughput sequencing analysis
|http://wiki.SEQanswers.com
|align="center"|Yes
|align="center"|[12]
|align="center"|No
|-
|SNPedia
|A wiki supporting personal genome annotation, interpretation and analysis
|http://www.snpedia.com
|align="center"|Yes
|align="center"|[13]
|align="center"|No
|-
|SubtiWiki
|A comprehensive community resource for the model organism Bacillus subtilis
|http://subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page
|align="center"|Yes
|align="center"|[14]
|align="center"|No
|-
|Transdab Wiki
|A wiki database of transglutaminase substrate proteins
|http://genomics.dote.hu/wiki
|align="center"|Yes
|align="center"|[15]
|align="center"|No
|-
|WikiCell
|A unified resource platform for human transcriptomics research
|http://www.wikicell.org
|align="center"|Yes
|align="center"|[16]
|align="center"|No
|-
|WikiGenes
|A collaborative knowledge resource for the life sciences
|http://www.wikigenes.org
|align="center"|No
|align="center"|[17]
|align="center"|No
|-
|WikiPathways
|An open, public platform dedicated to the curation of biological pathways
|http://www.wikipathways.org
|align="center"|Yes
|align="center"|[18]
|align="center"|No
|-
|WikiProteins
|A wiki-based system for community annotation of proteins
|http://www.wikiprofessional.org
|align="center"|(Not available)
|align="center"|[19]
|align="center"|No
|}

'''References''':
# Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects, Nucleic Acids Res 2012;40:D1295-1300.
# Stokes TH, Torrance JT, Li H et al. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses, BMC Bioinformatics 2008;9 Suppl 6:S18.
# Hoehndorf R, Bacher J, Backhaus M et al. BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology, BMC Bioinformatics 2009;10 Suppl 5:S5.
# McIntosh BK, Renfro DP, Knapp GS et al. EcoliWiki: a wiki-based community resource for Escherichia coli, Nucleic Acids Res 2012;40:D1270-1277.
# Dai L, Xu C, Tian M et al. Community intelligence in knowledge curation: an application to managing scientific nomenclature, PLoS One 2013;8:e56961.
# Good BM, Clarke EL, de Alfaro L et al. The Gene Wiki in 2011: community intelligence applied to human gene annotation, Nucleic Acids Res 2012;40:D1255-1261.
# Renfro DP, McIntosh BK, Venkatraman A et al. GONUTS: the Gene Ontology Normal Usage Tracking System, Nucleic Acids Res 2012;40:D1262-1269.
# Bolser DM, Chibon PY, Palopoli N et al. MetaBase--the wiki-database of biological databases, Nucleic Acids Res 2012;40:D1250-1254.
# Stehr H, Duarte JM, Lappe M et al. PDBWiki: added value through community annotation of the Protein Data Bank, Database (Oxford) 2010;2010:baq009.
# Hodis E, Prilusky J, Martz E et al. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules, Genome Biol 2008;9:R121.
# Gardner PP, Daub J, Tate J et al. Rfam: Wikipedia, clans and the "decimal" release, Nucleic Acids Res 2011;39:D141-145.
# Li JW, Robison K, Martin M et al. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis, Nucleic Acids Res 2012;40:D1313-1317.
# Cariaso M, Lennon G. SNPedia: a wiki supporting personal genome annotation, interpretation and analysis, Nucleic Acids Res 2012;40:D1308-1312.
# Mader U, Schmeisky AG, Florez LA et al. SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis, Nucleic Acids Res 2012;40:D1278-1287.
# Csosz E, Mesko B, Fesus L. Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface, Amino Acids 2009;36:615-617.
# Zhao D, Wu J, Zhou Y et al. WikiCell: a unified resource platform for human transcriptomics research, OMICS 2012;16:357-362.
# Hoffmann R. A wiki for the life sciences where authorship matters, Nat Genet 2008;40:1047-1051.
# Kelder T, van Iersel MP, Hanspers K et al. WikiPathways: building research communities on biological pathways, Nucleic Acids Res 2012;40:D1301-1307.
# Mons B, Ashburner M, Chichester C et al. Calling on a million minds for community annotation in WikiProteins, Genome Biol 2008;9:R89.

Main Page

2013-07-15T08:00:32Z

Zhang Zhang:

Biological Wikis

2013-07-15T07:37:19Z

Zhang Zhang:

{| class="wikitable sortable"
|-
! scope="col" align="left"| Name
! scope="col" align="left"| Description
! scope="col" align="left"| Availability
! scope="col"| MediaWiki-based
! scope="col"| Reference
|-
|959 Nematode Genomes
|A semantic wiki for coordinating sequencing projects
|http://www.nematodegenomes.org
|align="center"|Yes
|align="center"|[1]
|-
|ArrayWiki
|A community-maintained system for sharing public microarray data repositories and meta-analyses
|http://arraywiki.bme.gatech.edu
|align="center"|Yes
|align="center"|[2]
|-
|BOWiki
|An ontology-based wiki for annotation of data and integration of knowledge
|http://www.bowiki.net
|align="center"|No
|align="center"|[3]
|-
|EcoliWiki
|A wiki-based community resource for Escherichia coli
|http://ecoliwiki.net
|align="center"|Yes
|align="center"|[4]
|-
|ESND
|A wiki-based English-to-Chinese scientific nomenclature dictionary
|http://esnd.big.ac.cn
|align="center"|Yes
|align="center"|[5]
|-
|Gene Wiki
|A wiki harnessing community intelligence to the annotation of human gene and protein function
|http://en.wikipedia.org/wiki/Portal:Gene_Wiki
|align="center"|Yes
|align="center"|[6]
|-
|GONUTS
|A community-based browser and usage guide for Gene Ontology (GO) terms and a community system for general GO annotation of proteins
|http://gowiki.tamu.edu
|align="center"|Yes
|align="center"|[7]
|-
|MetaBase
|A community-curated database of commonly used biological databases
|http://www.metadatabase.org
|align="center"|Yes
|align="center"|[8]
|-
|PDBWiki
|A community annotated knowledge base of biological molecular structures
|http://www.pdbwiki.org
|align="center"|Yes
|align="center"|[9]
|-
|Proteopedia
|A scientific wiki bridging the rift between three-dimensional structure and function of biomacromolecules
|http://www.proteopedia.org
|align="center"|Yes
|align="center"|[10]
|-
|Rfam
|A community-derived annotation of RNA families
|http://rfam.sanger.ac.uk
|align="center"|Yes
|align="center"|[11]
|-
|RiceWiki
|A wiki-based, publicly editable and open-content platform for community annotation of rice genes
|http://ricewiki.big.ac.cn
|align="center"|Yes
|align="center"|Unpublished
|-
|SEQanswers Wiki
|A wiki database of tools for high-throughput sequencing analysis
|http://wiki.SEQanswers.com
|align="center"|Yes
|align="center"|[12]
|-
|SNPedia
|A wiki supporting personal genome annotation, interpretation and analysis
|http://www.snpedia.com
|align="center"|Yes
|align="center"|[13]
|-
|SubtiWiki
|A comprehensive community resource for the model organism Bacillus subtilis
|http://subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page
|align="center"|Yes
|align="center"|[14]
|-
|Transdab Wiki
|A wiki database of transglutaminase substrate proteins
|http://genomics.dote.hu/wiki
|align="center"|Yes
|align="center"|[15]
|-
|WikiCell
|A unified resource platform for human transcriptomics research
|http://www.wikicell.org
|align="center"|Yes
|align="center"|[16]
|-
|WikiGenes
|A collaborative knowledge resource for the life sciences
|http://www.wikigenes.org
|align="center"|No
|align="center"|[17]
|-
|WikiPathways
|An open, public platform dedicated to the curation of biological pathways
|http://www.wikipathways.org
|align="center"|Yes
|align="center"|[18]
|-
|WikiProteins
|A wiki-based system for community annotation of proteins
|http://www.wikiprofessional.org
|align="center"|(Not available)
|align="center"|[19]
|}

'''References''':
# Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects, Nucleic Acids Res 2012;40:D1295-1300.
# Stokes TH, Torrance JT, Li H et al. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses, BMC Bioinformatics 2008;9 Suppl 6:S18.
# Hoehndorf R, Bacher J, Backhaus M et al. BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology, BMC Bioinformatics 2009;10 Suppl 5:S5.
# McIntosh BK, Renfro DP, Knapp GS et al. EcoliWiki: a wiki-based community resource for Escherichia coli, Nucleic Acids Res 2012;40:D1270-1277.
# Dai L, Xu C, Tian M et al. Community intelligence in knowledge curation: an application to managing scientific nomenclature, PLoS One 2013;8:e56961.
# Good BM, Clarke EL, de Alfaro L et al. The Gene Wiki in 2011: community intelligence applied to human gene annotation, Nucleic Acids Res 2012;40:D1255-1261.
# Renfro DP, McIntosh BK, Venkatraman A et al. GONUTS: the Gene Ontology Normal Usage Tracking System, Nucleic Acids Res 2012;40:D1262-1269.
# Bolser DM, Chibon PY, Palopoli N et al. MetaBase--the wiki-database of biological databases, Nucleic Acids Res 2012;40:D1250-1254.
# Stehr H, Duarte JM, Lappe M et al. PDBWiki: added value through community annotation of the Protein Data Bank, Database (Oxford) 2010;2010:baq009.
# Hodis E, Prilusky J, Martz E et al. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules, Genome Biol 2008;9:R121.
# Gardner PP, Daub J, Tate J et al. Rfam: Wikipedia, clans and the "decimal" release, Nucleic Acids Res 2011;39:D141-145.
# Li JW, Robison K, Martin M et al. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis, Nucleic Acids Res 2012;40:D1313-1317.
# Cariaso M, Lennon G. SNPedia: a wiki supporting personal genome annotation, interpretation and analysis, Nucleic Acids Res 2012;40:D1308-1312.
# Mader U, Schmeisky AG, Florez LA et al. SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis, Nucleic Acids Res 2012;40:D1278-1287.
# Csosz E, Mesko B, Fesus L. Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface, Amino Acids 2009;36:615-617.
# Zhao D, Wu J, Zhou Y et al. WikiCell: a unified resource platform for human transcriptomics research, OMICS 2012;16:357-362.
# Hoffmann R. A wiki for the life sciences where authorship matters, Nat Genet 2008;40:1047-1051.
# Kelder T, van Iersel MP, Hanspers K et al. WikiPathways: building research communities on biological pathways, Nucleic Acids Res 2012;40:D1301-1307.
# Mons B, Ashburner M, Chichester C et al. Calling on a million minds for community annotation in WikiProteins, Genome Biol 2008;9:R89.

Biological Wikis

2013-07-15T07:34:59Z

Zhang Zhang:

{| class="wikitable"
|-
! scope="col" align="left"| Name
! scope="col" align="left"| Description
! scope="col" align="left"| Availability
! scope="col"| MediaWiki-based
! scope="col"| Reference
|-
|959 Nematode Genomes
|A semantic wiki for coordinating sequencing projects
|http://www.nematodegenomes.org
|align="center"|Yes
|align="center"|[1]
|-
|ArrayWiki
|A community-maintained system for sharing public microarray data repositories and meta-analyses
|http://arraywiki.bme.gatech.edu
|align="center"|Yes
|align="center"|[2]
|-
|BOWiki
|An ontology-based wiki for annotation of data and integration of knowledge
|http://www.bowiki.net
|align="center"|No
|align="center"|[3]
|-
|EcoliWiki
|A wiki-based community resource for Escherichia coli
|http://ecoliwiki.net
|align="center"|Yes
|align="center"|[4]
|-
|ESND
|A wiki-based English-to-Chinese scientific nomenclature dictionary
|http://esnd.big.ac.cn
|align="center"|Yes
|align="center"|[5]
|-
|Gene Wiki
|A wiki harnessing community intelligence to the annotation of human gene and protein function
|http://en.wikipedia.org/wiki/Portal:Gene_Wiki
|align="center"|Yes
|align="center"|[6]
|-
|GONUTS
|A community-based browser and usage guide for Gene Ontology (GO) terms and a community system for general GO annotation of proteins
|http://gowiki.tamu.edu
|align="center"|Yes
|align="center"|[7]
|-
|MetaBase
|A community-curated database of commonly used biological databases
|http://www.metadatabase.org
|align="center"|Yes
|align="center"|[8]
|-
|PDBWiki
|A community annotated knowledge base of biological molecular structures
|http://www.pdbwiki.org
|align="center"|Yes
|align="center"|[9]
|-
|Proteopedia
|A scientific wiki bridging the rift between three-dimensional structure and function of biomacromolecules
|http://www.proteopedia.org
|align="center"|Yes
|align="center"|[10]
|-
|Rfam
|A community-derived annotation of RNA families
|http://rfam.sanger.ac.uk
|align="center"|Yes
|align="center"|[11]
|-
|RiceWiki
|A wiki-based, publicly editable and open-content platform for community annotation of rice genes
|http://ricewiki.big.ac.cn
|align="center"|Yes
|align="center"|Unpublished
|-
|SEQanswers Wiki
|A wiki database of tools for high-throughput sequencing analysis
|http://wiki.SEQanswers.com
|align="center"|Yes
|align="center"|[12]
|-
|SNPedia
|A wiki supporting personal genome annotation, interpretation and analysis
|http://www.snpedia.com
|align="center"|Yes
|align="center"|[13]
|-
|SubtiWiki
|A comprehensive community resource for the model organism Bacillus subtilis
|http://subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page
|align="center"|Yes
|align="center"|[14]
|-
|Transdab Wiki
|A wiki database of transglutaminase substrate proteins
|http://genomics.dote.hu/wiki
|align="center"|Yes
|align="center"|[15]
|-
|WikiCell
|A unified resource platform for human transcriptomics research
|http://www.wikicell.org
|align="center"|Yes
|align="center"|[16]
|-
|WikiGenes
|A collaborative knowledge resource for the life sciences
|http://www.wikigenes.org
|align="center"|No
|align="center"|[17]
|-
|WikiPathways
|An open, public platform dedicated to the curation of biological pathways
|http://www.wikipathways.org
|align="center"|Yes
|align="center"|[18]
|-
|WikiProteins
|A wiki-based system for community annotation of proteins
|http://www.wikiprofessional.org
|align="center"|(Not available)
|align="center"|[19]
|}

'''References''':
# Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects, Nucleic Acids Res 2012;40:D1295-1300.
# Stokes TH, Torrance JT, Li H et al. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses, BMC Bioinformatics 2008;9 Suppl 6:S18.
# Hoehndorf R, Bacher J, Backhaus M et al. BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology, BMC Bioinformatics 2009;10 Suppl 5:S5.
# McIntosh BK, Renfro DP, Knapp GS et al. EcoliWiki: a wiki-based community resource for Escherichia coli, Nucleic Acids Res 2012;40:D1270-1277.
# Dai L, Xu C, Tian M et al. Community intelligence in knowledge curation: an application to managing scientific nomenclature, PLoS One 2013;8:e56961.
# Good BM, Clarke EL, de Alfaro L et al. The Gene Wiki in 2011: community intelligence applied to human gene annotation, Nucleic Acids Res 2012;40:D1255-1261.
# Renfro DP, McIntosh BK, Venkatraman A et al. GONUTS: the Gene Ontology Normal Usage Tracking System, Nucleic Acids Res 2012;40:D1262-1269.
# Bolser DM, Chibon PY, Palopoli N et al. MetaBase--the wiki-database of biological databases, Nucleic Acids Res 2012;40:D1250-1254.
# Stehr H, Duarte JM, Lappe M et al. PDBWiki: added value through community annotation of the Protein Data Bank, Database (Oxford) 2010;2010:baq009.
# Hodis E, Prilusky J, Martz E et al. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules, Genome Biol 2008;9:R121.
# Gardner PP, Daub J, Tate J et al. Rfam: Wikipedia, clans and the "decimal" release, Nucleic Acids Res 2011;39:D141-145.
# Li JW, Robison K, Martin M et al. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis, Nucleic Acids Res 2012;40:D1313-1317.
# Cariaso M, Lennon G. SNPedia: a wiki supporting personal genome annotation, interpretation and analysis, Nucleic Acids Res 2012;40:D1308-1312.
# Mader U, Schmeisky AG, Florez LA et al. SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis, Nucleic Acids Res 2012;40:D1278-1287.
# Csosz E, Mesko B, Fesus L. Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface, Amino Acids 2009;36:615-617.
# Zhao D, Wu J, Zhou Y et al. WikiCell: a unified resource platform for human transcriptomics research, OMICS 2012;16:357-362.
# Hoffmann R. A wiki for the life sciences where authorship matters, Nat Genet 2008;40:1047-1051.
# Kelder T, van Iersel MP, Hanspers K et al. WikiPathways: building research communities on biological pathways, Nucleic Acids Res 2012;40:D1301-1307.
# Mons B, Ashburner M, Chichester C et al. Calling on a million minds for community annotation in WikiProteins, Genome Biol 2008;9:R89.

Biological Wikis

2013-07-15T07:27:03Z

Zhang Zhang:

{| class="wikitable"
|-
! scope="col" align="left"| Name
! scope="col" align="left"| Description
! scope="col" align="left"| Availability
! scope="col"| MediaWiki-based
! scope="col"| Reference
|-
|959 Nematode Genomes
|A semantic wiki for coordinating sequencing projects;
|http://www.nematodegenomes.org
|align="center"|Yes
|align="center"|[1]
|-
|ArrayWiki
|A community-maintained system for sharing public microarray data repositories and meta-analyses;
|http://arraywiki.bme.gatech.edu
|align="center"|Yes
|align="center"|[2]
|-
|BOWiki
|An ontology-based wiki for annotation of data and integration of knowledge;
|http://www.bowiki.net
|align="center"|No
|align="center"|[3]
|-
|EcoliWiki
|A wiki-based community resource for Escherichia coli;
|http://ecoliwiki.net
|align="center"|Yes
|align="center"|[4]
|-
|ESND
|A wiki-based English-to-Chinese scientific nomenclature dictionary;
|http://esnd.big.ac.cn
|align="center"|Yes
|align="center"|[5]
|-
|Gene Wiki
|A wiki harnessing community intelligence to the annotation of human gene and protein function;
|http://en.wikipedia.org/wiki/Portal:Gene_Wiki
|align="center"|Yes
|align="center"|[6]
|-
|GONUTS
|A community-based browser and usage guide for Gene Ontology (GO) terms and a community system for general GO annotation of proteins;
|http://gowiki.tamu.edu
|align="center"|Yes
|align="center"|[7]
|-
|MetaBase
|A community-curated database of commonly used biological databases;
|http://www.metadatabase.org
|align="center"|Yes
|align="center"|[8]
|-
|PDBWiki
|A community annotated knowledge base of biological molecular structures;
|http://www.pdbwiki.org
|align="center"|Yes
|align="center"|[9]
|-
|Proteopedia
|A scientific wiki bridging the rift between three-dimensional structure and function of biomacromolecules;
|http://www.proteopedia.org
|align="center"|Yes
|align="center"|[10]
|-
|Rfam
|A community-derived annotation of RNA families;
|http://rfam.sanger.ac.uk
|align="center"|Yes
|align="center"|[11]
|-
|RiceWiki
|A wiki-based, publicly editable and open-content platform for community annotation of rice genes;
|http://ricewiki.big.ac.cn
|align="center"|Yes
|align="center"|Unpublished
|-
|SEQanswers Wiki
|A wiki database of tools for high-throughput sequencing analysis;
|http://wiki.SEQanswers.com
|align="center"|Yes
|align="center"|[12]
|-
|SNPedia
|A wiki supporting personal genome annotation, interpretation and analysis;
|http://www.snpedia.com
|align="center"|Yes
|align="center"|[13]
|-
|SubtiWiki
|A comprehensive community resource for the model organism Bacillus subtilis;
|http://subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page
|align="center"|Yes
|align="center"|[14]
|-
|Transdab Wiki
|A wiki database of transglutaminase substrate proteins;
|http://genomics.dote.hu/wiki
|align="center"|Yes
|align="center"|[15]
|-
|WikiCell
|A unified resource platform for human transcriptomics research;
|http://www.wikicell.org
|align="center"|Yes
|align="center"|[16]
|-
|WikiGenes
|A collaborative knowledge resource for the life sciences;
|http://www.wikigenes.org
|align="center"|No
|align="center"|[17]
|-
|WikiPathways
|An open, public platform dedicated to the curation of biological pathways;
|http://www.wikipathways.org
|align="center"|Yes
|align="center"|[18]
|-
|WikiProteins
|A wiki-based system for community annotation of proteins;
|http://www.wikiprofessional.org
|align="center"|(Not available)
|align="center"|[19]
|}

'''References''':
# Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects, Nucleic Acids Res 2012;40:D1295-1300.
# Stokes TH, Torrance JT, Li H et al. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses, BMC Bioinformatics 2008;9 Suppl 6:S18.
# Hoehndorf R, Bacher J, Backhaus M et al. BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology, BMC Bioinformatics 2009;10 Suppl 5:S5.
# McIntosh BK, Renfro DP, Knapp GS et al. EcoliWiki: a wiki-based community resource for Escherichia coli, Nucleic Acids Res 2012;40:D1270-1277.
# Dai L, Xu C, Tian M et al. Community intelligence in knowledge curation: an application to managing scientific nomenclature, PLoS One 2013;8:e56961.
# Good BM, Clarke EL, de Alfaro L et al. The Gene Wiki in 2011: community intelligence applied to human gene annotation, Nucleic Acids Res 2012;40:D1255-1261.
# Renfro DP, McIntosh BK, Venkatraman A et al. GONUTS: the Gene Ontology Normal Usage Tracking System, Nucleic Acids Res 2012;40:D1262-1269.
# Bolser DM, Chibon PY, Palopoli N et al. MetaBase--the wiki-database of biological databases, Nucleic Acids Res 2012;40:D1250-1254.
# Stehr H, Duarte JM, Lappe M et al. PDBWiki: added value through community annotation of the Protein Data Bank, Database (Oxford) 2010;2010:baq009.
# Hodis E, Prilusky J, Martz E et al. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules, Genome Biol 2008;9:R121.
# Gardner PP, Daub J, Tate J et al. Rfam: Wikipedia, clans and the "decimal" release, Nucleic Acids Res 2011;39:D141-145.
# Li JW, Robison K, Martin M et al. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis, Nucleic Acids Res 2012;40:D1313-1317.
# Cariaso M, Lennon G. SNPedia: a wiki supporting personal genome annotation, interpretation and analysis, Nucleic Acids Res 2012;40:D1308-1312.
# Mader U, Schmeisky AG, Florez LA et al. SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis, Nucleic Acids Res 2012;40:D1278-1287.
# Csosz E, Mesko B, Fesus L. Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface, Amino Acids 2009;36:615-617.
# Zhao D, Wu J, Zhou Y et al. WikiCell: a unified resource platform for human transcriptomics research, OMICS 2012;16:357-362.
# Hoffmann R. A wiki for the life sciences where authorship matters, Nat Genet 2008;40:1047-1051.
# Kelder T, van Iersel MP, Hanspers K et al. WikiPathways: building research communities on biological pathways, Nucleic Acids Res 2012;40:D1301-1307.
# Mons B, Ashburner M, Chichester C et al. Calling on a million minds for community annotation in WikiProteins, Genome Biol 2008;9:R89.

Wiki Extensions

2013-07-14T08:05:26Z

Zhang Zhang:

Wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing through a variety of e-utility methods.

====AuthorReward====
* Description: A wiki extension to provide a standard practice to reward community-curated efforts in bio-wikis through contribution quantification and explicit authorship.
* Reference: [http://www.ncbi.nlm.nih.gov/pubmed/23732274 AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification], ''Bioinformatics'', 2013, 29(14):1837-1839.
* Availability: http://code.google.com/p/authorreward, http://www.mediawiki.org/wiki/Extension:AuthorReward

====LiMi====
* Description: literature mining in aid of gene annotation in biological knowledge wikis.

====ColSeq====
* Description: color molecular sequence according to sequence features.

ScienceWikis:Funding

2013-07-14T08:03:58Z

Zhang Zhang:

ScienceWikis is developed and maintained by [http://cbb.big.ac.cn the Zhang Lab] at [http://english.big.cas.cn Beijing Institute of Genomics, Chinese Academy of Sciences].

ScienceWikis is supported by grants from:
* the “100-Talent Program” of Chinese Academy of Sciences (Y1SLXb1365), and
* National Programs for High Technology Research and Development (863 Program; 2012AA020409), the Ministry of Science and technology of the People’s Republic of China.

Main Page

2013-07-14T07:59:36Z

Zhang Zhang:

Biological Wikis

2013-07-14T07:54:33Z

Zhang Zhang:

Biological wikis (bio-wiki) for community curation of immense knowledge.
====In service====
* [http://ricewiki.big.ac.cn '''RiceWiki''']: a community-curated resource of rice knowledge.
* [http://www.wikicell.org '''WikiCell''']: a portal for a unified view of the human transcriptome.
* [http://esnd.big.ac.cn '''ESND''']: a wiki-based English-to-Chinese Scientific Nomenclature Dictionary.

====Under construction====
* '''FishWiki''': a wiki-based community resource for carp.
* '''PigWiki''': a wiki-based community resource for pig.
* '''DateWiki''': a wiki-based community resource for date palm.
* '''VirusWiki''': a wiki-based community resource for virus.
* '''iBio''': my biology + my biography, a personal biographical wiki for researchers, archiving personal scientific collections.

MediaWiki:Sidebar

2013-07-14T07:54:05Z

Zhang Zhang:

Main Page

2013-07-14T07:53:33Z

Zhang Zhang:

Biological Wikis

2013-07-14T07:53:06Z

Zhang Zhang: Created page with "Build biological wikis for community curation of immense knowledge. ====In service==== * [http://ricewiki.big.ac.cn '''RiceWiki''']: a community-curated resource of rice know..."

Build biological wikis for community curation of immense knowledge.
====In service====
* [http://ricewiki.big.ac.cn '''RiceWiki''']: a community-curated resource of rice knowledge.
* [http://www.wikicell.org '''WikiCell''']: a portal for a unified view of the human transcriptome.
* [http://esnd.big.ac.cn '''ESND''']: a wiki-based English-to-Chinese Scientific Nomenclature Dictionary.

====Under construction====
* '''FishWiki''': a wiki-based community resource for carp.
* '''PigWiki''': a wiki-based community resource for pig.
* '''DateWiki''': a wiki-based community resource for date palm.
* '''VirusWiki''': a wiki-based community resource for virus.
* '''iBio''': my biology + my biography, a personal biographical wiki for researchers, archiving personal scientific collections.

Biological Knowledge Wikis

2013-07-14T07:51:50Z

Zhang Zhang:

ScienceWikis:Participants

2012-11-30T07:04:01Z

Zhang Zhang:

==Steering Committee==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jun Yu (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jeffrey P. Townsend (Yale University)

==Bioinformatics Team==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jingfa Xiao (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jiayan Wu (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Xumin Wang (Beijing Institute of Genomics, Chinese Academy of Sciences)

==Software Development Team==

* Lin Dai (Beijing Institute of Technology)

* Zhong Jing (Supercomputing Center, Computer Network Information Center, Chinese Academy of Sciences)

ScienceWikis:Participants

2012-11-30T07:03:10Z

Zhang Zhang:

==Steering Committee==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jun Yu (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jeffrey P. Townsend (Yale University)

==Bioinformatics Team==

* Zhang Zhang (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jingfa Xiao (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Jiayan Wu (Beijing Institute of Genomics, Chinese Academy of Sciences)

* Xumin Wang (Beijing Institute of Genomics, Chinese Academy of Sciences)

==Software Development Team==

* Lin Dai (Beijing Institute of Technology)

* Jing Zhong (Supercomputing Center, Computer Network Information Center, Chinese Academy of Sciences)

ScienceWikis:Participants

2012-11-30T01:34:12Z

Zhang Zhang:

ScienceWikis:Purpose

2012-11-30T01:31:50Z

Zhang Zhang:

* Build professional academic wikis for biological knowledge curation (such as, wiki-based gene annotation system).

* Measure users' contributions, give explicit authorship and provide a standard practice to reward community-curated efforts in bio-wikis.

* Provide a central archive of quantitative contributions and citations in different bio-wikis.

* Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

Wiki Extensions

2012-11-30T01:30:17Z

Zhang Zhang:

Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing through a variety of e-utility methods.

====AuthorReward====
* Description: A wiki extension to provide a standard practice to reward community-curated efforts in bio-wikis through contribution quantification and explicit authorship.
* Reference: Increasing community participation in biological knowledge wikis through automated authorship quantification, under revision.
* Availability: http://code.google.com/p/authorreward, http://www.mediawiki.org/wiki/Extension:AuthorReward

====LiMi====
* Description: literature mining in aid of gene annotation in biological knowledge wikis.

====ColSeq====
* Description: color molecular sequence according to sequence features.

Biological Knowledge Wikis

2012-11-30T01:26:22Z

Zhang Zhang:

Build biological knowledge wikis for community curation of immense knowledge.
====In service====
* [http://ricewiki.big.ac.cn '''RiceWiki''']: a community-curated resource of rice knowledge.
* [http://www.wikicell.org '''WikiCell''']: a portal for a unified view of the human transcriptome.
* [http://esnd.big.ac.cn '''ESND''']: a wiki-based English-to-Chinese Scientific Nomenclature Dictionary.

====Under construction====
* '''FishWiki''': a wiki-based community resource for carp.
* '''PigWiki''': a wiki-based community resource for pig.
* '''DateWiki''': a wiki-based community resource for date palm.
* '''VirusWiki''': a wiki-based community resource for virus.
* '''iBio''': my biology + my biography, a personal biographical wiki for researchers, archiving personal scientific collections.

Biological Knowledge Wikis

2012-10-19T01:55:31Z

Zhang Zhang:

Build professional academic wikis for biological knowledge integration.
====In service====
* [http://ricewiki.big.ac.cn '''RiceWiki''']: a community-curated resource of rice knowledge.
* [http://www.wikicell.org '''WikiCell''']: a portal for a unified view of the human transcriptome.
* [http://esnd.big.ac.cn '''ESND''']: a wiki-based English-to-Chinese Scientific Nomenclature Dictionary.

====Under construction====
* '''FishWiki''': a wiki-based community resource for carp.
* '''PigWiki''': a wiki-based community resource for pig.
* '''DateWiki''': a wiki-based community resource for date palm.
* '''VirusWiki''': a wiki-based community resource for virus.
* '''iBio''': my biology + my biography, a personal biographical wiki for researchers, archiving personal scientific collections.

ScienceWikis:Purpose

2012-10-19T01:53:45Z

Zhang Zhang:

* Build professional academic wikis for biological knowledge curation (such as, wiki-based gene annotation system).

* Establish next-generation resources, viz., reference sequence wikis for specific species.

* Measure users' contributions, give explicit authorship and provide a standard practice to reward community-curated efforts in biological knowledge wikis (bio-wikis).

* Provide a central archive of quantitative contributions and citations in different bio-wikis.

* Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

ScienceWikis:Summary

2012-10-19T01:52:02Z

Zhang Zhang:

'''ScienceWikis''' is a catalog of biological knowledge wikis and wiki extensions, aiming to exploit the full potential of wiki technology to harness community intelligence in knowledge curation.

Wiki Extensions

2012-09-30T14:47:28Z

Zhang Zhang:

Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing through a variety of e-utility methods.
* '''AuthorReward''': measure users' contributions, give explicit authorship and provide a standard practice to reward community-curated efforts in bio-wikis.
* '''LiMi''': literature mining in aid of gene annotation in biological knowledge wikis.
* '''ColSeq''': color molecular sequence according to sequence features.

ScienceWikis:Purpose

2012-09-30T14:46:16Z

Zhang Zhang:

* Build professional academic wikis for biological knowledge integration (such as, wiki-based gene annotation system), different from general wiki (such as, Wikipedia).

* Establish next-generation resources, viz., reference sequence wikis for specific species.

* Measure users' contributions, give explicit authorship and provide a standard practice to reward community-curated efforts in bio-wikis (viz., a wiki-based extension, named '''''AuthorReward''''').

* Provide a central archive of quantitative contributions and citations (delivered by '''''AuthorReward''''') made by different users in different bio-wikis.

* Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

ScienceWikis:Funding

2012-07-30T13:20:56Z

Zhang Zhang:

ScienceWikis is developed and maintained by [http://cbb.big.ac.cn the Zhang Lab] at [http://english.big.cas.cn Beijing Institute of Genomics, Chinese Academy of Sciences].

ScienceWikis is supported by the “100-Talent Program” of Chinese Academy of Sciences (Y1SLXb1365; awarded to [http://cbb.big.ac.cn/Zhang_Zhang Zhang Zhang]), and National Programs for High Technology Research and Development (863 Program; 2012AA020409).

ScienceWikis:Funding

2012-07-30T13:20:34Z

Zhang Zhang:

ScienceWikis is developed and maintained by [http://cbb.big.ac.cn the Zhang Lab] at [http://english.big.cas.cn Beijing Institute of Genomics, Chinese Academy of Sciences].

ScienceWikis is supported by

* the “100-Talent Program” of Chinese Academy of Sciences (Y1SLXb1365; awarded to [http://cbb.big.ac.cn/Zhang_Zhang Zhang Zhang]), and
* National Programs for High Technology Research and Development (863 Program; 2012AA020409).

ScienceWikis:Funding

2012-07-30T13:19:03Z

Zhang Zhang:

ScienceWikis is supported by the “100-Talent Program” of Chinese Academy of Sciences (Y1SLXb1365; awarded to [http://cbb.big.ac.cn/Zhang_Zhang Zhang Zhang]) and National Programs for High Technology Research and Development (863 Program; 2012AA020409).

ScienceWikis:Participants

2012-07-30T13:14:09Z

Zhang Zhang:

* Zhang Zhang: Beijing Institute of Genomics, Chinese Academy of Sciences (PI)

* Jian Sang: Chinese Academy of Forestry

* Ming Tian: Beijing Institute of Technology

* Chao Xu: Beijing Institute of Technology

* Lin Dai: Beijing Institute of Technology

* Lina Ma: Beijing Institute of Genomics, Chinese Academy of Sciences

* Hao Wu: Beijing Institute of Genomics, Chinese Academy of Sciences

* Dawei Huang: Beijing Institute of Genomics, Chinese Academy of Sciences

* Gang Wu: Beijing Institute of Genomics, Chinese Academy of Sciences

* Dong Zou: Beijing Institute of Genomics, Chinese Academy of Sciences

* Ang Li: Beijing Institute of Genomics, Chinese Academy of Sciences

* Siqi Liu: Beijing Institute of Genomics, Chinese Academy of Sciences

* Guangyu Wang: Beijing Institute of Genomics, Chinese Academy of Sciences

* Ziying Xu: Beijing Institute of Genomics, Chinese Academy of Sciences

* Guiming Liu: Beijing Institute of Genomics, Chinese Academy of Sciences

* Lili Hao: Beijing Institute of Genomics, Chinese Academy of Sciences

* Dapeng Wang: Beijing Institute of Genomics, Chinese Academy of Sciences

MediaWiki:Sidebar

2012-07-30T13:13:08Z

Zhang Zhang:

Main Page

2012-07-30T13:12:29Z

Zhang Zhang:

Wiki Extensions

2012-07-30T13:12:13Z

Zhang Zhang: Created page with "Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing through a variety of e-utility methods. * '''ScienceRew..."

Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing through a variety of e-utility methods.
* '''ScienceReward''': measure users' contributions, give explicit authorship and provide a standard practice for rewarding users' contributions in bio-wikis.
* '''LiMi''': literature mining in aid of gene annotation in biological knowledge wikis.
* '''ColSeq''': color molecular sequence according to sequence features.

Main Page

2012-07-30T13:11:15Z

Zhang Zhang:

Biological Knowledge Wikis

2012-07-30T13:10:22Z

Zhang Zhang: Created page with "Build professional academic wikis for biological knowledge integration. ====In service==== * [http://ricewiki.big.ac.cn '''RiceWiki''']: a wiki-based community resource for ''..."

Build professional academic wikis for biological knowledge integration.
====In service====
* [http://ricewiki.big.ac.cn '''RiceWiki''']: a wiki-based community resource for ''Oryza sativa''.
* [http://www.wikicell.org '''WikiCell''']: a portal for a unified view of the human transcriptome.
* [http://esnd.big.ac.cn '''ESND''']: a wiki-based English-to-Chinese Scientific Nomenclature Dictionary.

====Under construction====
* '''FishWiki''': a wiki-based community resource for carp.
* '''PigWiki''': a wiki-based community resource for pig.
* '''DateWiki''': a wiki-based community resource for date palm.
* '''VirusWiki''': a wiki-based community resource for virus.
* '''iBio''': my biology + my biography, a personal biographical wiki for researchers, archiving personal scientific collections.

ScienceWikis:Purpose

2012-07-30T13:08:50Z

Zhang Zhang:

* Build professional academic wikis for biological knowledge integration (such as, wiki-based gene annotation system), different from general wiki (such as, Wikipedia).

* Establish next-generation resources, viz., reference sequence wikis for specific species.

* Measure users' contributions, give explicit authorship and provide a standard practice for rewarding users' contributions in bio-wikis (viz., a wiki-based extension, named '''''ScienceReward''''').

* Provide a central archive of quantitative contributions and citations (delivered by '''''ScienceReward''''') made by different users in different bio-wikis.

* Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

Main Page

2012-07-30T13:08:23Z

Zhang Zhang:

ScienceWikis:Purpose

2012-07-30T13:06:46Z

Zhang Zhang:

* Build professional academic wikis for biological knowledge integration (such as, wiki-based gene annotation system), different from general wiki (such as, Wikipedia).

* Establish next-generation resources, viz., reference sequence wikis for specific species.

* Measure users' contributions, give explicit authorship and provide a standard practice for rewarding users' contributions in bio-wikis (a wiki-based extension, named '''''ScienceReward''''').

* Provide a central archive of quantitative contributions and citations (delivered by '''''ScienceReward''''') made by different users in different bio-wikis.

* Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

ScienceWikis:Purpose

2012-07-30T12:38:30Z

Zhang Zhang:

* Build professional academic wikis for biological knowledge integration (such as, wiki-based gene annotation system), different from general wiki (such as, Wikipedia).

* Establish next-generation resources, viz., reference sequence wikis for specific species.

* Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

* Measure users' contributions, give explicit authorship and provide a standard practice for rewarding users' contributions in bio-wikis.

Main Page

2012-07-30T12:37:55Z

Zhang Zhang:

Main Page

2012-07-16T18:28:49Z

Zhang Zhang:

Main Page

2012-07-16T18:28:11Z

Zhang Zhang:

ScienceWikis:Summary

2012-07-16T14:38:26Z

Zhang Zhang:

'''ScienceWikis''' is a catalog of biological knowledge wikis and wiki extensions, aiming to exploit the full potential of wiki technology in life sciences.