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{{ScienceWikis:Purpose}}
 
{{ScienceWikis:Purpose}}
  
==Projects==
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==Biological Wikis==  
===Biological Wikis===  
 
 
<!---------------Featured Research----------------->
 
<!---------------Featured Research----------------->
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
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<!-----------English------------>
 
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">LncRNAWiki</div>
 
'''A wiki-based database for community curation of human long non-coding RNAs.'''
 
 
<!-----------------Chinese---------------------->
 
<!-----------------Chinese---------------------->
 
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|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:33.3%"|
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://bigd.big.ac.cn/databasecommons'''Database Commons'''] </div>
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<div style="font-size:105%;text-align:center;">
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A catalog of biological databases<br><br>
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</div>
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://icg.big.ac.cn '''ICG'''] </div>
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<div style="font-size:105%;text-align:center;">
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A knowledgebase of Internal Control Genes for RT-qPCR normalization<br><br>
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</div>
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<!-----------English------------>
 
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;"> RiceWiki </div>
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:135%;text-align:center; font-weight:bold;">[http://lncrna.big.ac.cn/index.php/Main_Page '''LncRNAWiki''']</div>
'''A community-curated knowledgebase for the rice research community.'''
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<div style="font-size:105%;text-align:center;">
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A wiki-based database for community curation of human long non-coding RNAs<br><br>
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</div>
 
|}
 
|}
  
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<!---------------Featured Research----------------->
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
{|border="0" cellspacing="0" cellpadding="0" style="margin:1em 0; background:transparent; width:100%;"
 
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|-
<!-----------English------------>
 
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:50%"|
 
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">WikiCell</div>
 
'''A portal for a unified view of the human transcriptome.'''
 
 
<!-----------------Chinese---------------------->
 
<!-----------------Chinese---------------------->
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|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:33.3%"|
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://wiki.ic4r.org/index.php/Main_Page '''RiceWiki'''] </div>
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<div style="font-size:105%;text-align:center;">
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A community-curated knowledgebase for the rice research community<br><br>
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</div>
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|style="padding:0px 2px;"|
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|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;width:33.3%"|
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://wikicell.big.ac.cn '''WikiCell'''] </div>
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<div style="font-size:105%;text-align:center;">
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A portal for a unified view of the human transcriptome<br><br>
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</div>
 
|style="padding:0px 2px;"|
 
|style="padding:0px 2px;"|
 
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;"|
 
|valign="top" style="border:1px solid #ACD6FF; background-color:transparent;"|
<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; font-size:125%; font-weight:bold;">ESND</div>
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<div style="background:#ACD6FF; border-bottom:1px solid #ACD6FF; padding:0.2em 0.5em; text-align:center;font-size:135%; font-weight:bold;">[http://esnd.big.ac.cn/index.php/Main_Page '''ESND'''] </div>
'''A wiki-based English-to-Chinese Scientific Nomenclature Dictionary. '''
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<div style="font-size:105%;text-align:center;">
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A wiki-based English-to-Chinese Scientific Nomenclature Dictionary<br><br>
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</div>
 
|}
 
|}
 
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==Wiki extensions==  
See [[Biological_Wikis|a list of biological wikis]].
 
===Wiki extensions===  
 
 
{{:Wiki_Extensions}}
 
{{:Wiki_Extensions}}
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==Publications==
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<div style="padding:0.5em 1em;font-size:110%">
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*'''ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization.''' ''Nucleic Acids Research'' (2018), 46(D1):D121-D126. [http://www.ncbi.nlm.nih.gov/pubmed/29036693 PMID=29036693]
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*'''LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs.''' ''Nucleic Acids Research'' (2015), 43:D187-92. [http://www.ncbi.nlm.nih.gov/pubmed/25399417 PMID=25399417]
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*'''RiceWiki: a wiki-based database for community curation of rice genes.''' ''Nucleic Acids Research'' (2014), 42(Database issue):D1222-1228. [http://www.ncbi.nlm.nih.gov/pubmed/24136999 PMID=24136999]
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*'''WikiCell: a unified resource platform for human transcriptomics research.''' ''Omics: a journal of integrative biology'' (2012),16.6:357-362. [http://www.ncbi.nlm.nih.gov/pubmed/22702248 PMID=22702248]
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*'''Community intelligence in knowledge curation: an application to managing scientific nomenclature.''' ''PloS one'' (2013), 8.2:e56961.[http://www.ncbi.nlm.nih.gov/pubmed/23451119 PMID=23451119]
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*'''AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification.''' ''Bioinformatics'' (2013), 29(14):1837-1839.[http://www.ncbi.nlm.nih.gov/pubmed/23732274 PMID=23732274]]
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</div>

Latest revision as of 11:26, 26 December 2018


Welcome to ScienceWikis
Contribute your efforts, further our knowledge.

ScienceWikis is a catalog of biological knowledge wikis and wiki extensions, aiming to exploit the full potential of wiki technology to harness community intelligence in knowledge integration and curation.

Purpose & Aims

  • Build professional academic wikis for biological knowledge integration and curation (such as, wiki-based gene annotation system).
  • Measure users' contributions, give explicit authorship and provide a standard practice to reward community-curated efforts in bio-wikis.
  • Provide a central archive of quantitative contributions and citations in different bio-wikis.
  • Develop wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing.

Biological Wikis

A catalog of biological databases

A knowledgebase of Internal Control Genes for RT-qPCR normalization

A wiki-based database for community curation of human long non-coding RNAs

A community-curated knowledgebase for the rice research community

A portal for a unified view of the human transcriptome

A wiki-based English-to-Chinese Scientific Nomenclature Dictionary

Wiki extensions

Wiki extensions to facilitate biological content creation and editing, data visualization, exchange and sharing through a variety of e-utility methods.

AuthorReward

LiMi

  • Description: literature mining in aid of gene annotation in biological knowledge wikis.

ColSeq

  • Description: color molecular sequence according to sequence features.

Publications

  • ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. Nucleic Acids Research (2018), 46(D1):D121-D126. PMID=29036693
  • LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. Nucleic Acids Research (2015), 43:D187-92. PMID=25399417
  • RiceWiki: a wiki-based database for community curation of rice genes. Nucleic Acids Research (2014), 42(Database issue):D1222-1228. PMID=24136999
  • WikiCell: a unified resource platform for human transcriptomics research. Omics: a journal of integrative biology (2012),16.6:357-362. PMID=22702248
  • Community intelligence in knowledge curation: an application to managing scientific nomenclature. PloS one (2013), 8.2:e56961.PMID=23451119
  • AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification. Bioinformatics (2013), 29(14):1837-1839.PMID=23732274]