BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.
97,272 records from 44 NGDC & Partner databases.
| Database | Records Number | Description |
|---|---|---|
| GSA | 3,914 | Genome Sequence Archive |
| BioProject | 1,047 | Biological Project Library |
| BioSample | 547 | Biological Sample Library |
| iEKPD | 323 | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains |
| RMVar | 257 | RNA Modification associated variants database |
| EKPD | 109 | Eukaryotic Kinase and Phosphatase Database |
| AnimalTFDB | 102 | Animal Transcription Factor Database |
| HGD | 34 | Homologous Gene Database |
| MethBank 4.0 | 17 | a database of DNA methylation across a variety of species |
| Gene Expression Nebulas | 17 | A data portal of transcriptomic profiles across multiple species |
| Ascancer Atlas | 14 | A comprehensive knowledgebase of alternative splicing in human cancers |
| NucMap | 14 | A database of genome-wide nucleosome positioning map across species. |
| GSA for Human | 12 | Genome Sequence Archive for Human |
| OMIX | 12 | OMIX |
| SEGreg | 11 | Database of specifically expressed genes and regulation |
| RhesusBase Genes | 9 | |
| NODE | 8 | The National Omics Data Encyclopedia |
| MethBank SRMs | 7 | Methbank, Single-base Resolution Methylomes (SRMs) |
| VCG | 7 | Virtual Chinese Genome Database is a dynamic genome database of Chinese population. |
| BioCode | 5 | Archive Bioinformatics Codes for Open Source Projects |
| DEG | 5 | Database of Essential Genes |
| LeukemiaDB | 4 | LeukemiaDB collects 3068 samples in 188 leukemia-associated RNA-seq datasets from NCBI GEO and SRA. |
| EPSD | 4 | Eukaryotic Phosphorylation Site Database |
| hTFtarget | 4 | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account |
| Database Commons | 3 | a curated catalogue of biological databases. |
| dbPAF | 3 | database of Phospho-sites in Animals and Fungi |
| lnCAR | 3 | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays |
| BBCancer | 2 | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers |
| CancerSEA | 2 | CancerSEA: a cancer single-cell state atlas |
| Cell Taxonomy | 2 | Cell Taxonomy is a curated repository of cell types with multifaceted characterization. |
| GenTree | 2 | GenTree, the time tree of genes along the evolutionary history |
| GVM | 2 | Genome Variation Map |
| Platelets expression atlas | 2 | Platelet Expression Atlas (PEA) is a comprehensive expression resource and functional analysis platform for human platelets |
| lncRNASNP2 | 2 | |
| Methbank CRMs | 2 | Methbank, Consensus Reference Methylomes (CRMs) |
| PLMD | 2 | Protein Lysine Modifications Database |
| PTMD | 2 | A database of human disease-associated post-translational modifications |
| DiseaseEnhancer | 1 | DiseaseEnhancer: a resource of human disease-associated enhancer catalog. |
| EWAS Atlas | 1 | A knowledgebase of epigenome-wide association studies |
| EWAS Data Hub | 1 | A data hub of DNA methylation array data and metadata |
| EDK | 1 | Editome Disease Knowledgebase |
| miRNASNP-v3 | 1 | miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets |
| TWAS Atlas | 1 | Transcriptome-Wide Association Studies Atlas |
| OpenLB | 90,754 | Open Library of Bioscience |
| Database | Records Number | Description |
|---|
Powered by EBISearch
| Database | Records Number | Description |
|---|
Powered by NCBI Entrez
| Database | Records Number | Description |
|---|
Powered by EBI AlphaFold DB