BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.
5,292 records from 34 NGDC & Partner databases.
Database | Records Number | Description |
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GSA | 2,988 | Genome Sequence Archive |
BioProject | 902 | Biological Project Library |
BioSample | 525 | Biological Sample Library |
iEKPD | 323 | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains |
RMVar | 257 | RNA Modification associated variants database |
EKPD | 109 | Eukaryotic Kinase and Phosphatase Database |
AnimalTFDB | 70 | AnimalTFDB is a comprehensive database including classification and annotation of genome-wide transcription factors |
Gene Expression Nebulas | 17 | A data portal of transcriptomic profiles across multiple species |
nucmap | 14 | A database of genome-wide nucleosome positioning map across species. |
SEGreg | 11 | Database of specifically expressed genes and regulation |
RhesusBase Genes | 9 | |
GSA for Human | 8 | Genome Sequence Archive for Human |
MethBank SRMs | 7 | Methbank, Single-base Resolution Methylomes (SRMs) |
vcg | 7 | Virtual Chinese Genome Database is a dynamic genome database of Chinese population. |
BioCode | 5 | Archive Bioinformatics Codes for Open Source Projects |
DEG | 5 | Database of Essential Genes |
EPSD | 4 | Eukaryotic Phosphorylation Site Database |
hTFtarget | 4 | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account |
dbPAF | 3 | database of Phospho-sites in Animals and Fungi |
lnCAR | 3 | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays |
BBCancer | 2 | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers |
CancerSEA | 2 | CancerSEA: a cancer single-cell state atlas |
GenTree | 2 | GenTree, the time tree of genes along the evolutionary history |
lncRNASNP2 | 2 | |
Methbank CRMs | 2 | Methbank, Consensus Reference Methylomes (CRMs) |
PLMD | 2 | Protein Lysine Modifications Database |
PTMD | 2 | A database of human disease-associated post-translational modifications |
Database Commons | 1 | Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms. |
DiseaseEnhancer | 1 | DiseaseEnhancer: a resource of human disease-associated enhancer catalog. |
EWAS Atlas | 1 | A knowledgebase of epigenome-wide association studies |
EWAS Data Hub | 1 | A data hub of DNA methylation array data and metadata |
EDK | 1 | Editome Disease Knowledgebase |
miRNASNP-v3 | 1 | miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets |
OMIX | 1 | OMIX |
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