BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.
43,001 records from 48 NGDC & Partner databases.
| Database | Records Number | Description |
|---|---|---|
| GSA | 3,333 | Genome Sequence Archive |
| VarClear | 2,252 | Gene Variation Interpretation Database |
| BioProject | 852 | Biological Project Library |
| BioSample | 609 | Biological Sample Library |
| HGD | 172 | Homologous Gene Database |
| RMVar | 172 | RNA Modification associated variants database |
| AnimalTFDB | 132 | Animal Transcription Factor Database |
| iEKPD | 91 | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains |
| RhesusBase Genes | 44 | |
| MethBank 4.0 | 43 | a database of DNA methylation across a variety of species |
| DEG | 36 | Database of Essential Genes |
| DrLLPS | 36 | Data resource of liquid-liquid phase separation |
| MethBank SRMs | 32 | Methbank, Single-base Resolution Methylomes (SRMs) |
| Gene Expression Nebulas | 30 | A data portal of transcriptomic profiles across multiple species |
| VCG | 25 | Virtual Chinese Genome Database is a dynamic genome database of Chinese population. |
| NucMap | 23 | A database of genome-wide nucleosome positioning map across species. |
| MiCroKiTS | 22 | Midbody, Centrosome, Kinetochore, Telomere and Spindle |
| EPSD | 21 | Eukaryotic Phosphorylation Site Database |
| hTFtarget | 19 | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account |
| GenTree | 15 | GenTree, the time tree of genes along the evolutionary history |
| lnCAR | 10 | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays |
| TCOD | 10 | A multi-omics data platform for tropical crops |
| dbPAF | 7 | database of Phospho-sites in Animals and Fungi |
| Ascancer Atlas | 6 | A comprehensive knowledgebase of alternative splicing in human cancers |
| Database Commons | 5 | Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms. |
| BioCode | 5 | Archive Bioinformatics Codes for Open Source Projects |
| Methbank CRMs | 5 | Methbank, Consensus Reference Methylomes (CRMs) |
| PLMD | 5 | Protein Lysine Modifications Database |
| LeukemiaDB | 4 | LeukemiaDB collects 3068 samples in 188 leukemia-associated RNA-seq datasets from NCBI GEO and SRA. |
| BBCancer | 4 | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers |
| PTMD | 4 | A database of human disease-associated post-translational modifications |
| GSA for Human | 3 | Genome Sequence Archive for Human |
| CGGA | 1 | Chinese Glioma Genome Atlas |
| DiseaseEnhancer | 1 | DiseaseEnhancer: a resource of human disease-associated enhancer catalog. |
| EWAS Atlas | 1 | A knowledgebase of epigenome-wide association studies |
| EWAS Data Hub | 1 | A data hub of DNA methylation array data and metadata |
| CancerSEA | 1 | CancerSEA: a cancer single-cell state atlas |
| Cell Taxonomy | 1 | Cell Taxonomy is a curated repository of cell types with multifaceted characterization. |
| CGDB | 1 | Circadian Gene Database |
| EDK | 1 | Editome Disease Knowledgebase |
| Platelets expression atlas | 1 | Platelet Expression Atlas (PEA) is a comprehensive expression resource and functional analysis platform for human platelets |
| lncRNASNP2 | 1 | |
| miRNASNP-v3 | 1 | miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets |
| OMIX | 1 | OMIX |
| TWAS Atlas | 1 | Transcriptome-Wide Association Studies Atlas |
| OpenLB | 28,526 | Open Library of Bioscience |
| NucBank Nucleotide | 4,422 | a collection of nucleotide sequences from several sources |
| NucBank Protein | 2,013 | a collection of protein sequences from several sources |
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