Variation ID : sbi2142

Variation Detail



Variation ID sbi2142
Type SNP
Position Chr01 40320-40320
Ref /Alleles T/ C
MAF T: 0.370
5' Flank ATATTGATACTATGGCCTTGTTTAGTTACA
3' Flank CTGAAAACTTTTCAAGATTTCTTATCACAT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved C|C
2 103 Improved C|C
3 107 Improved C|C
4 11 Improved C|C
5 110 Improved T|T
6 123 Landrace C|C
7 131 Improved T|T
8 132 Improved C|C
9 135 Improved C|C
10 137 Improved T|T
11 138 Improved T|T
12 14 Improved N|N
13 140 Improved T|T
14 141 Improved C|C
15 144 Improved C|C
16 150 Improved C|C
17 154 Improved C|C
18 159 Landrace N|N
19 16 Improved T|T
20 161 Landrace T|T
21 167 Improved N|N
22 168 Improved N|N
23 170 Improved N|N
24 173 Improved C|C
25 175 Improved C|C
26 176 Improved T|T
27 182 Landrace N|N
28 186 Improved T|T
29 190 Improved N|N
30 192 Improved T|T
31 194 Improved C|C
32 195 Improved C|C
33 197 Improved C|C
34 J22 Landrace C|C
35 J26 Landrace T|T
36 J5 Landrace N|N
37 J50 Landrace T|T
38 2001 Landrace C|C
39 2005 Improved C|C
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved C|C
43 2010 Landrace C|C
44 2016 Improved N|N
45 2019 Improved T|T
46 202 Improved N|N
47 2021 Improved C|C
48 2023 Improved C|C
49 2026 Improved T|T
50 2029 Improved N|N
51 2030 Landrace N|N
52 2031 Landrace N|N
53 2036 Improved T|T
54 2037 Improved C|C
55 2038 Improved N|N
56 2039 Improved N|N
57 204 Improved N|N
58 2042 Improved C|C
59 2043 Improved C|C
60 2048 Improved N|N
61 2049 Improved T|T
62 205 Improved N|N
63 2050 Improved C|C
64 2052 Improved T|T
65 2054 Improved N|N
66 2056 Improved T|T
67 2059 Improved C|C
68 206 Improved T|T
69 2064 Improved C|C
70 2065 Improved T|T
71 2067 Improved C|C
72 2068 Improved C|C
73 2069 Improved C|C
74 2071 Improved C|C
75 2074 Improved C|C
76 2075 Improved N|N
77 2076 Improved T|T
78 2080 Improved C|C
79 2081 Improved T|T
80 2082 Improved C|C
81 2086 Improved N|N
82 2088 Improved T|T
83 260 Wild sorghum C|C
84 261 Improved T|T
85 262 Improved N|N
86 263 Improved T|T
87 286 Improved T|T
88 29 Improved C|C
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved C|C
92 32 Improved T|T
93 34 Improved N|N
94 346 Landrace T|T
95 348 Wild sorghum C|C
96 353 Wild sorghum C|C
97 355 Wild sorghum C|C
98 357 Wild sorghum C|C
99 364 Wild sorghum N|N
100 367 Landrace N|N
101 s37 S.propinquum C|C
102 s38 S.propinquum C|C
103 370 Landrace C|C
104 377 Wild sorghum C|C
105 392 Wild sorghum C|C
106 394 Wild sorghum C|C
107 40 Improved T|T
108 42 Improved N|N
109 43 Improved T|C
110 45 Improved C|C
111 47 Improved N|N
112 48 Improved C|C
113 51 Improved C|C
114 53 Improved C|C
115 56 Improved T|T
116 61 Improved T|T
117 62 Improved T|T
118 66 Landrace N|N
119 67 Improved C|C
120 68 Improved N|N
121 70 Improved C|C
122 73 Improved T|T
123 75 Improved N|N
124 88 Improved C|C
125 89 Improved C|C
126 91 Improved T|C
127 92 Improved C|C
128 93 Improved C|C
129 94 Improved C|C
130 95 Improved N|N
131 96 Improved C|C
132 97 Improved C|C
133 s1 Improved T|T
134 s36 Wild sorghum C|C
135 s2 Landrace T|T
136 s3 Improved T|T
137 s32 Improved T|T
138 s43 Weedy T|T
139 s40 Landrace C|C
140 s41 Weedy C|C
141 s39 Landrace T|C
142 s42 Landrace C|C
143 s47 Improved N|N
144 s5 Landrace C|C
145 GW102 Landrace N|N
146 GW103 Landrace C|C
147 GW104 Landrace T|T
148 GW105 Landrace C|C
149 GW16 Landrace C|C
150 GW2 Landrace T|T
151 GW34 Landrace C|C
152 GW37 Landrace C|C
153 GW58 Landrace C|C
154 GW59 Landrace C|C
155 GW9 Landrace C|C
156 s4 Weedy C|C
157 s6 Improved T|T
158 s7 Landrace C|C
159 s8 Landrace T|T
160 s9 Landrace T|T
161 J101 Landrace C|C
162 J103 Improved T|T
163 J112 Landrace C|C
164 J113 Improved C|C
165 J129 Improved T|T
166 J130 Improved N|N
167 J136 Improved N|N
168 J152 Improved N|N
169 J2 Landrace N|N
170 J20 Landrace T|T
171 J4 Landrace T|T
172 J42 Landrace N|N
173 J44 Landrace N|N
174 J49 Landrace N|N
175 J52 Landrace T|T
176 J53 Landrace C|C
177 J54 Landrace C|C
178 J57 Landrace N|N
179 J59 Landrace T|T
180 J64 Landrace T|T
181 J66 Landrace T|T
182 J67 Landrace N|N
183 J69 Landrace T|T
184 J87 Landrace N|N
185 J99 Landrace N|N
186 s45 Landrace T|T
187 s11 Improved C|C
188 s10 Improved T|T
189 s46 Improved T|T
190 s12 Improved T|T
191 s13 Landrace T|T
192 MHMD Landrace C|C
193 s14 Improved T|T
194 s15 Improved T|T
195 s34 Weedy C|C
196 s33 Wild sorghum C|C
197 s21 Wild sorghum T|T
198 s16 Wild sorghum C|C
199 s44 Improved T|T
200 s35 Landrace C|C
201 s31 Wild sorghum C|C
202 s17 Improved T|T
203 s18 Improved T|T
204 s20 Improved T|T
205 s19 Improved T|T
206 s22 Landrace C|C
207 s23 Landrace C|C
208 s24 Landrace C|C
209 s25 Landrace T|T
210 s26 Landrace C|C
211 s27 Landrace C|C
212 s28 Landrace T|T
213 s29 Landrace C|C
214 s30 Landrace T|T
215 SL25 Wild sorghum C|C
216 SL105 Wild sorghum C|C
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum C|C
219 SL12 Wild sorghum C|C
220 SL129 Wild sorghum N|N
221 SL130 Wild sorghum C|C
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum C|C
224 SL137 Wild sorghum N|N
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum C|C
227 SL141 Wild sorghum C|C
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum C|C
230 SL32 Wild sorghum C|C
231 SL35 Wild sorghum C|C
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum C|C
234 SL39 Wild sorghum T|T
235 SL41 Wild sorghum C|C
236 SL43 Wild sorghum C|C
237 SL47 Wild sorghum C|C
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum C|C
240 SL53 Wild sorghum C|C
241 SL62 Wild sorghum C|C
242 SL83 Wild sorghum C|C
243 SL97 Landrace C|C
244 s48 Improved T|C
245 Tu13 Wild sorghum C|C
246 Tu14 Wild sorghum C|C
247 Tu30 Wild sorghum C|C
248 Tu5 Wild sorghum C|C
249 WSC5 Landrace C|C
250 WSC15 Landrace N|N
251 WSC19 Landrace T|T
252 WSC30 Landrace C|C
253 WSC52 Landrace C|C
254 WSC6 Landrace C|C
255 WSC61 Landrace N|N
256 WSC71 Improved T|T
257 WSC72 Landrace T|T
258 WSC79 Landrace C|C
259 WSC94 Landrace T|T
260 WSC99 Landrace C|C
261 WSC100 Landrace C|C
262 WSC104 Landrace C|C
263 WSC105 Landrace T|T
264 WSC12 Landrace T|T
265 WSC13 Landrace T|T
266 WSC16 Landrace C|C
267 WSC17 Landrace T|T
268 WSC18 Landrace T|T
269 WSC20 Landrace T|T
270 WSC24 Landrace T|T
271 WSC25 Landrace C|C
272 WSC29 Landrace C|C
273 WSC31 Landrace C|C
274 WSC32 Landrace C|C
275 WSC34 Landrace C|C
276 WSC38 Landrace N|N
277 WSC39 Improved C|C
278 WSC40 Landrace C|C
279 WSC54 Landrace C|C
280 WSC56 Landrace C|C
281 WSC59 Landrace C|C
282 WSC68 Landrace T|T
283 WSC70 Landrace T|T
284 WSC73 Landrace T|T
285 WSC81 Landrace C|C
286 WSC85 Improved C|C
287 WSC91 Landrace C|C
288 WSC93 Landrace C|C
289 WSC98 Landrace C|C

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi2142 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi2142 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi2142 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi2142 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi2142 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi2142 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser