sorgsd

Variation ID : sbi2322

Variation Detail

Variation ID	sbi2322
Type	SNP
Position	Chr01 43798-43798
Ref /Alleles	T/ G
MAF	T: 0.464
5' Flank	AAATACACTTGACAAAGAACCATAAGTCGC
3' Flank	GCATTTTTCATAGCTACACAACCAGTGGGA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	G\|G
2	103	Improved	G\|G
3	107	Improved	T\|T
4	11	Improved	N\|N
5	110	Improved	T\|T
6	123	Landrace	G\|G
7	131	Improved	T\|T
8	132	Improved	G\|G
9	135	Improved	G\|G
10	137	Improved	T\|T
11	138	Improved	T\|T
12	14	Improved	T\|T
13	140	Improved	T\|T
14	141	Improved	G\|G
15	144	Improved	G\|G
16	150	Improved	G\|G
17	154	Improved	G\|G
18	159	Landrace	T\|T
19	16	Improved	T\|T
20	161	Landrace	N\|N
21	167	Improved	T\|T
22	168	Improved	T\|T
23	170	Improved	T\|T
24	173	Improved	G\|G
25	175	Improved	G\|G
26	176	Improved	T\|T
27	182	Landrace	G\|G
28	186	Improved	T\|T
29	190	Improved	T\|T
30	192	Improved	T\|T
31	194	Improved	G\|G
32	195	Improved	G\|G
33	197	Improved	G\|G
34	J22	Landrace	G\|G
35	J26	Landrace	T\|T
36	J5	Landrace	G\|G
37	J50	Landrace	T\|T
38	2001	Landrace	G\|G
39	2005	Improved	N\|N
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	G\|G
43	2010	Landrace	G\|G
44	2016	Improved	G\|G
45	2019	Improved	T\|T
46	202	Improved	T\|T
47	2021	Improved	G\|G
48	2023	Improved	G\|G
49	2026	Improved	T\|T
50	2029	Improved	G\|G
51	2030	Landrace	G\|G
52	2031	Landrace	T\|T
53	2036	Improved	T\|T
54	2037	Improved	G\|G
55	2038	Improved	G\|G
56	2039	Improved	N\|N
57	204	Improved	T\|G
58	2042	Improved	T\|T
59	2043	Improved	G\|G
60	2048	Improved	N\|N
61	2049	Improved	N\|N
62	205	Improved	T\|T
63	2050	Improved	G\|G
64	2052	Improved	T\|T
65	2054	Improved	G\|G
66	2056	Improved	T\|T
67	2059	Improved	G\|G
68	206	Improved	T\|T
69	2064	Improved	G\|G
70	2065	Improved	T\|T
71	2067	Improved	G\|G
72	2068	Improved	G\|G
73	2069	Improved	G\|G
74	2071	Improved	G\|G
75	2074	Improved	N\|N
76	2075	Improved	T\|T
77	2076	Improved	T\|T
78	2080	Improved	N\|N
79	2081	Improved	T\|T
80	2082	Improved	N\|N
81	2086	Improved	N\|N
82	2088	Improved	T\|T
83	260	Wild sorghum	T\|T
84	261	Improved	T\|T
85	262	Improved	N\|N
86	263	Improved	T\|T
87	286	Improved	T\|T
88	29	Improved	G\|G
89	3	Improved	T\|T
90	302546	S.propinquum	N\|N
91	31	Improved	T\|G
92	32	Improved	T\|T
93	34	Improved	T\|G
94	346	Landrace	T\|T
95	348	Wild sorghum	G\|G
96	353	Wild sorghum	G\|G
97	355	Wild sorghum	G\|G
98	357	Wild sorghum	G\|G
99	364	Wild sorghum	G\|G
100	367	Landrace	T\|T
101	s37	S.propinquum	G\|G
102	s38	S.propinquum	G\|G
103	370	Landrace	T\|T
104	377	Wild sorghum	G\|G
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	G\|G
107	40	Improved	T\|T
108	42	Improved	G\|G
109	43	Improved	T\|T
110	45	Improved	G\|G
111	47	Improved	T\|T
112	48	Improved	G\|G
113	51	Improved	N\|N
114	53	Improved	G\|G
115	56	Improved	T\|T
116	61	Improved	T\|T
117	62	Improved	T\|T
118	66	Landrace	N\|N
119	67	Improved	G\|G
120	68	Improved	T\|T
121	70	Improved	G\|G
122	73	Improved	T\|T
123	75	Improved	T\|T
124	88	Improved	G\|G
125	89	Improved	G\|G
126	91	Improved	G\|G
127	92	Improved	G\|G
128	93	Improved	G\|G
129	94	Improved	G\|G
130	95	Improved	G\|G
131	96	Improved	G\|G
132	97	Improved	G\|G
133	s1	Improved	T\|T
134	s36	Wild sorghum	G\|G
135	s2	Landrace	T\|T
136	s3	Improved	T\|T
137	s32	Improved	T\|T
138	s43	Weedy	T\|T
139	s40	Landrace	G\|G
140	s41	Weedy	G\|G
141	s39	Landrace	T\|G
142	s42	Landrace	G\|G
143	s47	Improved	T\|T
144	s5	Landrace	G\|G
145	GW102	Landrace	T\|T
146	GW103	Landrace	G\|G
147	GW104	Landrace	T\|T
148	GW105	Landrace	G\|G
149	GW16	Landrace	G\|G
150	GW2	Landrace	T\|T
151	GW34	Landrace	G\|G
152	GW37	Landrace	G\|G
153	GW58	Landrace	G\|G
154	GW59	Landrace	G\|G
155	GW9	Landrace	G\|G
156	s4	Weedy	G\|G
157	s6	Improved	T\|T
158	s7	Landrace	G\|G
159	s8	Landrace	T\|T
160	s9	Landrace	T\|T
161	J101	Landrace	G\|G
162	J103	Improved	T\|T
163	J112	Landrace	G\|G
164	J113	Improved	T\|T
165	J129	Improved	T\|T
166	J130	Improved	T\|T
167	J136	Improved	T\|T
168	J152	Improved	T\|T
169	J2	Landrace	T\|T
170	J20	Landrace	T\|T
171	J4	Landrace	T\|T
172	J42	Landrace	T\|T
173	J44	Landrace	T\|T
174	J49	Landrace	G\|G
175	J52	Landrace	T\|T
176	J53	Landrace	G\|G
177	J54	Landrace	G\|G
178	J57	Landrace	T\|T
179	J59	Landrace	T\|T
180	J64	Landrace	T\|T
181	J66	Landrace	T\|T
182	J67	Landrace	T\|T
183	J69	Landrace	T\|T
184	J87	Landrace	G\|G
185	J99	Landrace	T\|T
186	s45	Landrace	T\|T
187	s11	Improved	G\|G
188	s10	Improved	T\|T
189	s46	Improved	T\|T
190	s12	Improved	T\|T
191	s13	Landrace	T\|T
192	MHMD	Landrace	G\|G
193	s14	Improved	T\|T
194	s15	Improved	T\|T
195	s34	Weedy	G\|G
196	s33	Wild sorghum	G\|G
197	s21	Wild sorghum	T\|T
198	s16	Wild sorghum	G\|G
199	s44	Improved	T\|T
200	s35	Landrace	G\|G
201	s31	Wild sorghum	G\|G
202	s17	Improved	T\|T
203	s18	Improved	T\|T
204	s20	Improved	T\|T
205	s19	Improved	T\|T
206	s22	Landrace	G\|G
207	s23	Landrace	G\|G
208	s24	Landrace	G\|G
209	s25	Landrace	T\|T
210	s26	Landrace	G\|G
211	s27	Landrace	G\|G
212	s28	Landrace	T\|T
213	s29	Landrace	T\|T
214	s30	Landrace	T\|T
215	SL25	Wild sorghum	G\|G
216	SL105	Wild sorghum	G\|G
217	SL108	Wild sorghum	G\|G
218	SL109	Wild sorghum	G\|G
219	SL12	Wild sorghum	G\|G
220	SL129	Wild sorghum	G\|G
221	SL130	Wild sorghum	G\|G
222	SL135	Wild sorghum	T\|G
223	SL136	Wild sorghum	G\|G
224	SL137	Wild sorghum	G\|G
225	SL138	Wild sorghum	G\|G
226	SL140	Wild sorghum	G\|G
227	SL141	Wild sorghum	G\|G
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	G\|G
230	SL32	Wild sorghum	G\|G
231	SL35	Wild sorghum	G\|G
232	SL36	Wild sorghum	G\|G
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	T\|T
235	SL41	Wild sorghum	G\|G
236	SL43	Wild sorghum	G\|G
237	SL47	Wild sorghum	G\|G
238	SL49	Wild sorghum	G\|G
239	SL51	Wild sorghum	G\|G
240	SL53	Wild sorghum	G\|G
241	SL62	Wild sorghum	G\|G
242	SL83	Wild sorghum	T\|G
243	SL97	Landrace	G\|G
244	s48	Improved	T\|T
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	G\|G
247	Tu30	Wild sorghum	G\|G
248	Tu5	Wild sorghum	G\|G
249	WSC5	Landrace	G\|G
250	WSC15	Landrace	G\|G
251	WSC19	Landrace	T\|T
252	WSC30	Landrace	T\|T
253	WSC52	Landrace	T\|T
254	WSC6	Landrace	G\|G
255	WSC61	Landrace	T\|T
256	WSC71	Improved	T\|T
257	WSC72	Landrace	T\|T
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	T\|T
260	WSC99	Landrace	G\|G
261	WSC100	Landrace	G\|G
262	WSC104	Landrace	G\|G
263	WSC105	Landrace	T\|T
264	WSC12	Landrace	T\|T
265	WSC13	Landrace	N\|N
266	WSC16	Landrace	G\|G
267	WSC17	Landrace	T\|T
268	WSC18	Landrace	T\|T
269	WSC20	Landrace	T\|T
270	WSC24	Landrace	T\|T
271	WSC25	Landrace	G\|G
272	WSC29	Landrace	G\|G
273	WSC31	Landrace	T\|T
274	WSC32	Landrace	G\|G
275	WSC34	Landrace	T\|T
276	WSC38	Landrace	T\|T
277	WSC39	Improved	G\|G
278	WSC40	Landrace	T\|T
279	WSC54	Landrace	G\|G
280	WSC56	Landrace	G\|G
281	WSC59	Landrace	G\|G
282	WSC68	Landrace	T\|T
283	WSC70	Landrace	T\|T
284	WSC73	Landrace	T\|T
285	WSC81	Landrace	G\|G
286	WSC85	Improved	G\|G
287	WSC91	Landrace	G\|G
288	WSC93	Landrace	G\|G
289	WSC98	Landrace	G\|G

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi2322	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi2322	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi2322	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

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