Variation ID : sbi33825244

Variation Detail



Variation ID sbi33825244
Type INDEL
Position Chr01 281-282
Ref /Alleles AT/ A
MAF A: 0.005
5' Flank ATTATTATCAAATAATATATGGATCAAACC
3' Flank TTAATATTTAACAATATAAACTTGTCTTCT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved AT|AT
4 11 Improved N|N
5 110 Improved AT|AT
6 123 Landrace AT|AT
7 131 Improved AT|AT
8 132 Improved AT|AT
9 135 Improved AT|AT
10 137 Improved AT|AT
11 138 Improved AT|AT
12 14 Improved N|N
13 140 Improved AT|AT
14 141 Improved N|N
15 144 Improved N|N
16 150 Improved AT|AT
17 154 Improved AT|AT
18 159 Landrace AT|AT
19 16 Improved AT|AT
20 161 Landrace N|N
21 167 Improved N|N
22 168 Improved AT|AT
23 170 Improved N|N
24 173 Improved AT|AT
25 175 Improved AT|AT
26 176 Improved AT|AT
27 182 Landrace N|N
28 186 Improved AT|AT
29 190 Improved N|N
30 192 Improved AT|AT
31 194 Improved N|N
32 195 Improved AT|AT
33 197 Improved N|N
34 J22 Landrace AT|AT
35 J26 Landrace AT|AT
36 J5 Landrace AT|AT
37 J50 Landrace AT|AT
38 2001 Landrace AT|AT
39 2005 Improved AT|AT
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace AT|AT
44 2016 Improved N|N
45 2019 Improved AT|AT
46 202 Improved AT|AT
47 2021 Improved N|N
48 2023 Improved AT|AT
49 2026 Improved AT|AT
50 2029 Improved AT|AT
51 2030 Landrace N|N
52 2031 Landrace N|N
53 2036 Improved N|N
54 2037 Improved AT|AT
55 2038 Improved AT|AT
56 2039 Improved AT|AT
57 204 Improved N|N
58 2042 Improved N|N
59 2043 Improved N|N
60 2048 Improved N|N
61 2049 Improved AT|AT
62 205 Improved N|N
63 2050 Improved AT|AT
64 2052 Improved AT|AT
65 2054 Improved AT|AT
66 2056 Improved AT|AT
67 2059 Improved AT|AT
68 206 Improved N|N
69 2064 Improved AT|AT
70 2065 Improved N|N
71 2067 Improved AT|AT
72 2068 Improved N|N
73 2069 Improved N|N
74 2071 Improved AT|AT
75 2074 Improved AT|AT
76 2075 Improved AT|AT
77 2076 Improved AT|AT
78 2080 Improved AT|AT
79 2081 Improved AT|AT
80 2082 Improved AT|AT
81 2086 Improved N|N
82 2088 Improved AT|AT
83 260 Wild sorghum N|N
84 261 Improved N|N
85 262 Improved N|N
86 263 Improved N|N
87 286 Improved N|N
88 29 Improved N|N
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved N|N
92 32 Improved AT|AT
93 34 Improved N|N
94 346 Landrace AT|AT
95 348 Wild sorghum N|N
96 353 Wild sorghum AT|AT
97 355 Wild sorghum AT|AT
98 357 Wild sorghum AT|AT
99 364 Wild sorghum N|N
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum AT|AT
103 370 Landrace N|N
104 377 Wild sorghum AT|AT
105 392 Wild sorghum AT|AT
106 394 Wild sorghum N|N
107 40 Improved AT|AT
108 42 Improved N|N
109 43 Improved AT|AT
110 45 Improved N|N
111 47 Improved N|N
112 48 Improved AT|AT
113 51 Improved AT|AT
114 53 Improved AT|AT
115 56 Improved AT|AT
116 61 Improved AT|AT
117 62 Improved AT|AT
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved N|N
121 70 Improved AT|AT
122 73 Improved N|N
123 75 Improved N|N
124 88 Improved AT|AT
125 89 Improved N|N
126 91 Improved AT|AT
127 92 Improved N|N
128 93 Improved N|N
129 94 Improved AT|AT
130 95 Improved N|N
131 96 Improved AT|AT
132 97 Improved AT|AT
133 s1 Improved AT|AT
134 s36 Wild sorghum AT|AT
135 s2 Landrace AT|AT
136 s3 Improved AT|AT
137 s32 Improved AT|AT
138 s43 Weedy AT|AT
139 s40 Landrace AT|AT
140 s41 Weedy AT|AT
141 s39 Landrace AT|AT
142 s42 Landrace AT|AT
143 s47 Improved AT|AT
144 s5 Landrace AT|AT
145 GW102 Landrace AT|AT
146 GW103 Landrace AT|AT
147 GW104 Landrace AT|AT
148 GW105 Landrace AT|AT
149 GW16 Landrace AT|AT
150 GW2 Landrace AT|AT
151 GW34 Landrace AT|AT
152 GW37 Landrace AT|AT
153 GW58 Landrace AT|AT
154 GW59 Landrace N|N
155 GW9 Landrace AT|AT
156 s4 Weedy AT|AT
157 s6 Improved AT|AT
158 s7 Landrace AT|AT
159 s8 Landrace AT|AT
160 s9 Landrace AT|AT
161 J101 Landrace N|N
162 J103 Improved N|N
163 J112 Landrace A|A
164 J113 Improved AT|AT
165 J129 Improved AT|AT
166 J130 Improved N|N
167 J136 Improved N|N
168 J152 Improved N|N
169 J2 Landrace AT|AT
170 J20 Landrace AT|AT
171 J4 Landrace N|N
172 J42 Landrace AT|AT
173 J44 Landrace N|N
174 J49 Landrace N|N
175 J52 Landrace N|N
176 J53 Landrace AT|AT
177 J54 Landrace AT|AT
178 J57 Landrace AT|AT
179 J59 Landrace AT|AT
180 J64 Landrace N|N
181 J66 Landrace N|N
182 J67 Landrace AT|AT
183 J69 Landrace AT|AT
184 J87 Landrace N|N
185 J99 Landrace N|N
186 s45 Landrace AT|AT
187 s11 Improved AT|AT
188 s10 Improved AT|AT
189 s46 Improved AT|AT
190 s12 Improved AT|AT
191 s13 Landrace AT|AT
192 MHMD Landrace AT|AT
193 s14 Improved AT|AT
194 s15 Improved AT|AT
195 s34 Weedy AT|AT
196 s33 Wild sorghum AT|AT
197 s21 Wild sorghum AT|AT
198 s16 Wild sorghum AT|AT
199 s44 Improved AT|AT
200 s35 Landrace AT|AT
201 s31 Wild sorghum AT|AT
202 s17 Improved AT|AT
203 s18 Improved AT|AT
204 s20 Improved AT|AT
205 s19 Improved AT|AT
206 s22 Landrace AT|AT
207 s23 Landrace AT|AT
208 s24 Landrace N|N
209 s25 Landrace AT|AT
210 s26 Landrace AT|AT
211 s27 Landrace AT|AT
212 s28 Landrace AT|AT
213 s29 Landrace AT|AT
214 s30 Landrace AT|AT
215 SL25 Wild sorghum AT|AT
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum AT|AT
218 SL109 Wild sorghum AT|AT
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum AT|AT
221 SL130 Wild sorghum AT|AT
222 SL135 Wild sorghum AT|AT
223 SL136 Wild sorghum AT|AT
224 SL137 Wild sorghum AT|AT
225 SL138 Wild sorghum AT|AT
226 SL140 Wild sorghum AT|AT
227 SL141 Wild sorghum AT|AT
228 SL19 Wild sorghum AT|AT
229 SL28 Wild sorghum AT|AT
230 SL32 Wild sorghum AT|AT
231 SL35 Wild sorghum AT|AT
232 SL36 Wild sorghum AT|AT
233 SL37 Wild sorghum AT|AT
234 SL39 Wild sorghum AT|AT
235 SL41 Wild sorghum AT|AT
236 SL43 Wild sorghum AT|AT
237 SL47 Wild sorghum N|N
238 SL49 Wild sorghum AT|AT
239 SL51 Wild sorghum AT|AT
240 SL53 Wild sorghum AT|AT
241 SL62 Wild sorghum AT|AT
242 SL83 Wild sorghum AT|AT
243 SL97 Landrace AT|AT
244 s48 Improved AT|AT
245 Tu13 Wild sorghum AT|AT
246 Tu14 Wild sorghum AT|AT
247 Tu30 Wild sorghum N|N
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace AT|AT
250 WSC15 Landrace AT|AT
251 WSC19 Landrace AT|AT
252 WSC30 Landrace AT|AT
253 WSC52 Landrace AT|AT
254 WSC6 Landrace AT|AT
255 WSC61 Landrace AT|AT
256 WSC71 Improved AT|AT
257 WSC72 Landrace AT|AT
258 WSC79 Landrace AT|AT
259 WSC94 Landrace AT|AT
260 WSC99 Landrace AT|AT
261 WSC100 Landrace AT|AT
262 WSC104 Landrace AT|AT
263 WSC105 Landrace AT|AT
264 WSC12 Landrace AT|AT
265 WSC13 Landrace AT|AT
266 WSC16 Landrace AT|AT
267 WSC17 Landrace AT|AT
268 WSC18 Landrace AT|AT
269 WSC20 Landrace AT|AT
270 WSC24 Landrace AT|AT
271 WSC25 Landrace AT|AT
272 WSC29 Landrace AT|AT
273 WSC31 Landrace AT|AT
274 WSC32 Landrace AT|AT
275 WSC34 Landrace AT|AT
276 WSC38 Landrace N|N
277 WSC39 Improved AT|AT
278 WSC40 Landrace AT|AT
279 WSC54 Landrace AT|AT
280 WSC56 Landrace AT|AT
281 WSC59 Landrace AT|AT
282 WSC68 Landrace AT|AT
283 WSC70 Landrace AT|AT
284 WSC73 Landrace AT|AT
285 WSC81 Landrace AT|AT
286 WSC85 Improved AT|AT
287 WSC91 Landrace AT|AT
288 WSC93 Landrace AT|AT
289 WSC98 Landrace AT|AT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825244 Sobic.001G000100 upstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser