sorgsd

Variation ID : sbi33825249

Variation Detail

Variation ID	sbi33825249
Type	INDEL
Position	Chr01 487-488
Ref /Alleles	AG/ A or *
MAF	A: 0.058
5' Flank	CCAATGGCGAAGCTAAGCTAGATAGTATTT
3' Flank	GGGGTGCAAATGCACCCCCAAATTTTGTAA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	AG\|AG
2	103	Improved	N\|N
3	107	Improved	A\|A
4	11	Improved	N\|N
5	110	Improved	AG\|AG
6	123	Landrace	AG\|AG
7	131	Improved	AG\|AG
8	132	Improved	AG\|AG
9	135	Improved	AG\|AG
10	137	Improved	AG\|AG
11	138	Improved	AG\|AG
12	14	Improved	N\|N
13	140	Improved	AG\|AG
14	141	Improved	AG\|AG
15	144	Improved	N\|N
16	150	Improved	AG\|AG
17	154	Improved	AG\|AG
18	159	Landrace	A\|A
19	16	Improved	AG\|AG
20	161	Landrace	AG\|AG
21	167	Improved	AG\|AG
22	168	Improved	AG\|AG
23	170	Improved	N\|N
24	173	Improved	N\|N
25	175	Improved	N\|N
26	176	Improved	AG\|AG
27	182	Landrace	AG\|AG
28	186	Improved	AG\|AG
29	190	Improved	AG\|AG
30	192	Improved	AG\|AG
31	194	Improved	N\|N
32	195	Improved	AG\|AG
33	197	Improved	N\|N
34	J22	Landrace	AG\|AG
35	J26	Landrace	AG\|AG
36	J5	Landrace	AG\|AG
37	J50	Landrace	AG\|AG
38	2001	Landrace	AG\|AG
39	2005	Improved	AG\|AG
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	AG\|AG
43	2010	Landrace	AG\|AG
44	2016	Improved	N\|N
45	2019	Improved	AG\|AG
46	202	Improved	AG\|AG
47	2021	Improved	N\|N
48	2023	Improved	AG\|AG
49	2026	Improved	AG\|AG
50	2029	Improved	AG\|AG
51	2030	Landrace	N\|N
52	2031	Landrace	AG\|AG
53	2036	Improved	AG\|AG
54	2037	Improved	AG\|AG
55	2038	Improved	AG\|AG
56	2039	Improved	AG\|AG
57	204	Improved	AG\|AG
58	2042	Improved	A\|A
59	2043	Improved	AG\|AG
60	2048	Improved	A\|A
61	2049	Improved	AG\|AG
62	205	Improved	N\|N
63	2050	Improved	N\|N
64	2052	Improved	AG\|AG
65	2054	Improved	N\|N
66	2056	Improved	N\|N
67	2059	Improved	AG\|AG
68	206	Improved	AG\|AG
69	2064	Improved	AG\|AG
70	2065	Improved	AG\|AG
71	2067	Improved	AG\|AG
72	2068	Improved	AG\|AG
73	2069	Improved	AG\|AG
74	2071	Improved	AG\|AG
75	2074	Improved	AG\|AG
76	2075	Improved	AG\|AG
77	2076	Improved	AG\|AG
78	2080	Improved	N\|N
79	2081	Improved	N\|N
80	2082	Improved	AG\|AG
81	2086	Improved	AG\|AG
82	2088	Improved	AG\|AG
83	260	Wild sorghum	N\|N
84	261	Improved	N\|N
85	262	Improved	N\|N
86	263	Improved	N\|N
87	286	Improved	AG\|AG
88	29	Improved	AG\|AG
89	3	Improved	AG\|AG
90	302546	S.propinquum	N\|N
91	31	Improved	AG\|AG
92	32	Improved	AG\|AG
93	34	Improved	N\|N
94	346	Landrace	AG\|AG
95	348	Wild sorghum	AG\|AG
96	353	Wild sorghum	N\|N
97	355	Wild sorghum	N\|N
98	357	Wild sorghum	AG\|AG
99	364	Wild sorghum	N\|N
100	367	Landrace	AG\|AG
101	s37	S.propinquum	N\|N
102	s38	S.propinquum	N\|N
103	370	Landrace	A\|A
104	377	Wild sorghum	AG\|AG
105	392	Wild sorghum	AG\|AG
106	394	Wild sorghum	AG\|AG
107	40	Improved	AG\|AG
108	42	Improved	AG\|AG
109	43	Improved	AG\|AG
110	45	Improved	AG\|AG
111	47	Improved	N\|N
112	48	Improved	AG\|AG
113	51	Improved	AG\|AG
114	53	Improved	AG\|AG
115	56	Improved	AG\|AG
116	61	Improved	AG\|AG
117	62	Improved	AG\|AG
118	66	Landrace	N\|N
119	67	Improved	N\|N
120	68	Improved	AG\|AG
121	70	Improved	AG\|AG
122	73	Improved	AG\|AG
123	75	Improved	AG\|AG
124	88	Improved	AG\|AG
125	89	Improved	N\|N
126	91	Improved	AG\|AG
127	92	Improved	AG\|AG
128	93	Improved	AG\|AG
129	94	Improved	AG\|AG
130	95	Improved	N\|N
131	96	Improved	AG\|AG
132	97	Improved	AG\|AG
133	s1	Improved	AG\|AG
134	s36	Wild sorghum	AG\|AG
135	s2	Landrace	AG\|AG
136	s3	Improved	AG\|AG
137	s32	Improved	AG\|AG
138	s43	Weedy	AG\|AG
139	s40	Landrace	AG\|AG
140	s41	Weedy	AG\|AG
141	s39	Landrace	AG\|AG
142	s42	Landrace	AG\|AG
143	s47	Improved	AG\|AG
144	s5	Landrace	AG\|AG
145	GW102	Landrace	AG\|AG
146	GW103	Landrace	AG\|AG
147	GW104	Landrace	AG\|AG
148	GW105	Landrace	AG\|AG
149	GW16	Landrace	AG\|AG
150	GW2	Landrace	AG\|AG
151	GW34	Landrace	AG\|AG
152	GW37	Landrace	AG\|AG
153	GW58	Landrace	AG\|AG
154	GW59	Landrace	N\|N
155	GW9	Landrace	AG\|AG
156	s4	Weedy	AG\|AG
157	s6	Improved	AG\|AG
158	s7	Landrace	AG\|AG
159	s8	Landrace	AG\|AG
160	s9	Landrace	AG\|AG
161	J101	Landrace	AG\|AG
162	J103	Improved	AG\|AG
163	J112	Landrace	AG\|AG
164	J113	Improved	A\|A
165	J129	Improved	AG\|AG
166	J130	Improved	AG\|AG
167	J136	Improved	N\|N
168	J152	Improved	AG\|AG
169	J2	Landrace	AG\|AG
170	J20	Landrace	AG\|AG
171	J4	Landrace	AG\|AG
172	J42	Landrace	AG\|AG
173	J44	Landrace	AG\|AG
174	J49	Landrace	N\|N
175	J52	Landrace	N\|N
176	J53	Landrace	AG\|AG
177	J54	Landrace	AG\|AG
178	J57	Landrace	AG\|AG
179	J59	Landrace	AG\|AG
180	J64	Landrace	AG\|AG
181	J66	Landrace	AG\|AG
182	J67	Landrace	AG\|AG
183	J69	Landrace	AG\|AG
184	J87	Landrace	AG\|AG
185	J99	Landrace	N\|N
186	s45	Landrace	AG\|AG
187	s11	Improved	AG\|AG
188	s10	Improved	AG\|AG
189	s46	Improved	AG\|AG
190	s12	Improved	AG\|AG
191	s13	Landrace	AG\|AG
192	MHMD	Landrace	AG\|AG
193	s14	Improved	AG\|AG
194	s15	Improved	AG\|AG
195	s34	Weedy	AG\|AG
196	s33	Wild sorghum	AG\|AG
197	s21	Wild sorghum	AG\|AG
198	s16	Wild sorghum	AG\|AG
199	s44	Improved	AG\|AG
200	s35	Landrace	AG\|AG
201	s31	Wild sorghum	AG\|AG
202	s17	Improved	AG\|AG
203	s18	Improved	AG\|AG
204	s20	Improved	AG\|AG
205	s19	Improved	AG\|AG
206	s22	Landrace	AG\|AG
207	s23	Landrace	AG\|AG
208	s24	Landrace	AG\|AG
209	s25	Landrace	AG\|AG
210	s26	Landrace	AG\|AG
211	s27	Landrace	AG\|AG
212	s28	Landrace	AG\|AG
213	s29	Landrace	AG\|AG
214	s30	Landrace	AG\|AG
215	SL25	Wild sorghum	AG\|AG
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	AG\|AG
218	SL109	Wild sorghum	\|
219	SL12	Wild sorghum	N\|N
220	SL129	Wild sorghum	AG\|AG
221	SL130	Wild sorghum	AG\|AG
222	SL135	Wild sorghum	AG\|AG
223	SL136	Wild sorghum	\|
224	SL137	Wild sorghum	AG\|AG
225	SL138	Wild sorghum	AG\|AG
226	SL140	Wild sorghum	AG\|AG
227	SL141	Wild sorghum	AG\|AG
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	AG\|AG
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	AG\|AG
232	SL36	Wild sorghum	AG\|AG
233	SL37	Wild sorghum	AG\|AG
234	SL39	Wild sorghum	AG\|AG
235	SL41	Wild sorghum	AG\|AG
236	SL43	Wild sorghum	AG\|AG
237	SL47	Wild sorghum	A\|A
238	SL49	Wild sorghum	AG\|AG
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	AG\|AG
241	SL62	Wild sorghum	AG\|AG
242	SL83	Wild sorghum	A\|A
243	SL97	Landrace	AG\|AG
244	s48	Improved	AG\|AG
245	Tu13	Wild sorghum	AG\|AG
246	Tu14	Wild sorghum	AG\|AG
247	Tu30	Wild sorghum	AG\|AG
248	Tu5	Wild sorghum	AG\|AG
249	WSC5	Landrace	AG\|AG
250	WSC15	Landrace	AG\|AG
251	WSC19	Landrace	AG\|AG
252	WSC30	Landrace	A\|A
253	WSC52	Landrace	A\|A
254	WSC6	Landrace	AG\|AG
255	WSC61	Landrace	AG\|AG
256	WSC71	Improved	AG\|AG
257	WSC72	Landrace	AG\|AG
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	AG\|AG
260	WSC99	Landrace	AG\|AG
261	WSC100	Landrace	AG\|AG
262	WSC104	Landrace	AG\|AG
263	WSC105	Landrace	AG\|AG
264	WSC12	Landrace	AG\|AG
265	WSC13	Landrace	AG\|AG
266	WSC16	Landrace	AG\|AG
267	WSC17	Landrace	AG\|AG
268	WSC18	Landrace	AG\|AG
269	WSC20	Landrace	AG\|AG
270	WSC24	Landrace	AG\|AG
271	WSC25	Landrace	AG\|AG
272	WSC29	Landrace	AG\|AG
273	WSC31	Landrace	A\|A
274	WSC32	Landrace	AG\|AG
275	WSC34	Landrace	A\|A
276	WSC38	Landrace	A\|A
277	WSC39	Improved	AG\|AG
278	WSC40	Landrace	A\|A
279	WSC54	Landrace	AG\|AG
280	WSC56	Landrace	AG\|AG
281	WSC59	Landrace	AG\|AG
282	WSC68	Landrace	AG\|AG
283	WSC70	Landrace	AG\|AG
284	WSC73	Landrace	AG\|AG
285	WSC81	Landrace	AG\|AG
286	WSC85	Improved	AG\|AG
287	WSC91	Landrace	AG\|AG
288	WSC93	Landrace	AG\|AG
289	WSC98	Landrace	AG\|AG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825249	Sobic.001G000100	upstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

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