sorgsd

Variation ID : sbi33825266

Variation Detail

Variation ID	sbi33825266
Type	INDEL
Position	Chr01 997-1001
Ref /Alleles	ATACC/ A
MAF	A: 0.077
5' Flank	GCCGTCAAGCGAAGGGAAGGGAAGCCATAT
3' Flank	TACCTTGAAGAAGAAAGTATATATCGGATC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	ATACC\|ATACC
2	103	Improved	ATACC\|ATACC
3	107	Improved	A\|A
4	11	Improved	A\|A
5	110	Improved	ATACC\|ATACC
6	123	Landrace	N\|N
7	131	Improved	ATACC\|ATACC
8	132	Improved	ATACC\|ATACC
9	135	Improved	A\|A
10	137	Improved	ATACC\|ATACC
11	138	Improved	ATACC\|ATACC
12	14	Improved	ATACC\|ATACC
13	140	Improved	ATACC\|ATACC
14	141	Improved	ATACC\|ATACC
15	144	Improved	ATACC\|ATACC
16	150	Improved	ATACC\|ATACC
17	154	Improved	ATACC\|ATACC
18	159	Landrace	N\|N
19	16	Improved	ATACC\|ATACC
20	161	Landrace	ATACC\|ATACC
21	167	Improved	ATACC\|ATACC
22	168	Improved	ATACC\|ATACC
23	170	Improved	ATACC\|ATACC
24	173	Improved	ATACC\|ATACC
25	175	Improved	ATACC\|ATACC
26	176	Improved	ATACC\|ATACC
27	182	Landrace	ATACC\|ATACC
28	186	Improved	ATACC\|ATACC
29	190	Improved	ATACC\|ATACC
30	192	Improved	ATACC\|ATACC
31	194	Improved	ATACC\|ATACC
32	195	Improved	ATACC\|ATACC
33	197	Improved	ATACC\|ATACC
34	J22	Landrace	ATACC\|ATACC
35	J26	Landrace	ATACC\|ATACC
36	J5	Landrace	ATACC\|ATACC
37	J50	Landrace	ATACC\|ATACC
38	2001	Landrace	ATACC\|ATACC
39	2005	Improved	ATACC\|ATACC
40	2008	Improved	ATACC\|ATACC
41	2009	Landrace	ATACC\|ATACC
42	201	Improved	ATACC\|ATACC
43	2010	Landrace	ATACC\|ATACC
44	2016	Improved	ATACC\|ATACC
45	2019	Improved	ATACC\|ATACC
46	202	Improved	ATACC\|ATACC
47	2021	Improved	ATACC\|ATACC
48	2023	Improved	ATACC\|ATACC
49	2026	Improved	ATACC\|ATACC
50	2029	Improved	ATACC\|ATACC
51	2030	Landrace	ATACC\|ATACC
52	2031	Landrace	ATACC\|ATACC
53	2036	Improved	ATACC\|ATACC
54	2037	Improved	ATACC\|ATACC
55	2038	Improved	N\|N
56	2039	Improved	ATACC\|ATACC
57	204	Improved	ATACC\|ATACC
58	2042	Improved	N\|N
59	2043	Improved	ATACC\|ATACC
60	2048	Improved	A\|A
61	2049	Improved	ATACC\|ATACC
62	205	Improved	ATACC\|ATACC
63	2050	Improved	ATACC\|ATACC
64	2052	Improved	ATACC\|ATACC
65	2054	Improved	ATACC\|ATACC
66	2056	Improved	ATACC\|ATACC
67	2059	Improved	ATACC\|ATACC
68	206	Improved	ATACC\|ATACC
69	2064	Improved	ATACC\|ATACC
70	2065	Improved	ATACC\|ATACC
71	2067	Improved	ATACC\|ATACC
72	2068	Improved	N\|N
73	2069	Improved	ATACC\|ATACC
74	2071	Improved	ATACC\|ATACC
75	2074	Improved	ATACC\|ATACC
76	2075	Improved	ATACC\|ATACC
77	2076	Improved	ATACC\|ATACC
78	2080	Improved	ATACC\|ATACC
79	2081	Improved	ATACC\|ATACC
80	2082	Improved	ATACC\|ATACC
81	2086	Improved	ATACC\|ATACC
82	2088	Improved	ATACC\|ATACC
83	260	Wild sorghum	N\|N
84	261	Improved	ATACC\|ATACC
85	262	Improved	ATACC\|ATACC
86	263	Improved	ATACC\|ATACC
87	286	Improved	ATACC\|ATACC
88	29	Improved	ATACC\|ATACC
89	3	Improved	ATACC\|ATACC
90	302546	S.propinquum	N\|N
91	31	Improved	ATACC\|ATACC
92	32	Improved	ATACC\|ATACC
93	34	Improved	ATACC\|ATACC
94	346	Landrace	ATACC\|ATACC
95	348	Wild sorghum	ATACC\|ATACC
96	353	Wild sorghum	ATACC\|ATACC
97	355	Wild sorghum	ATACC\|ATACC
98	357	Wild sorghum	ATACC\|ATACC
99	364	Wild sorghum	ATACC\|ATACC
100	367	Landrace	ATACC\|ATACC
101	s37	S.propinquum	ATACC\|ATACC
102	s38	S.propinquum	ATACC\|ATACC
103	370	Landrace	A\|A
104	377	Wild sorghum	ATACC\|ATACC
105	392	Wild sorghum	ATACC\|ATACC
106	394	Wild sorghum	ATACC\|ATACC
107	40	Improved	ATACC\|A
108	42	Improved	ATACC\|ATACC
109	43	Improved	ATACC\|ATACC
110	45	Improved	ATACC\|ATACC
111	47	Improved	ATACC\|ATACC
112	48	Improved	ATACC\|ATACC
113	51	Improved	ATACC\|ATACC
114	53	Improved	ATACC\|ATACC
115	56	Improved	ATACC\|ATACC
116	61	Improved	ATACC\|ATACC
117	62	Improved	ATACC\|ATACC
118	66	Landrace	A\|A
119	67	Improved	ATACC\|ATACC
120	68	Improved	ATACC\|ATACC
121	70	Improved	ATACC\|ATACC
122	73	Improved	ATACC\|ATACC
123	75	Improved	ATACC\|ATACC
124	88	Improved	ATACC\|ATACC
125	89	Improved	ATACC\|ATACC
126	91	Improved	ATACC\|ATACC
127	92	Improved	ATACC\|ATACC
128	93	Improved	ATACC\|ATACC
129	94	Improved	ATACC\|ATACC
130	95	Improved	N\|N
131	96	Improved	ATACC\|ATACC
132	97	Improved	ATACC\|ATACC
133	s1	Improved	ATACC\|ATACC
134	s36	Wild sorghum	ATACC\|ATACC
135	s2	Landrace	ATACC\|ATACC
136	s3	Improved	ATACC\|ATACC
137	s32	Improved	ATACC\|ATACC
138	s43	Weedy	ATACC\|ATACC
139	s40	Landrace	ATACC\|ATACC
140	s41	Weedy	ATACC\|ATACC
141	s39	Landrace	ATACC\|ATACC
142	s42	Landrace	ATACC\|ATACC
143	s47	Improved	ATACC\|ATACC
144	s5	Landrace	ATACC\|ATACC
145	GW102	Landrace	ATACC\|ATACC
146	GW103	Landrace	ATACC\|ATACC
147	GW104	Landrace	ATACC\|ATACC
148	GW105	Landrace	A\|A
149	GW16	Landrace	N\|N
150	GW2	Landrace	ATACC\|ATACC
151	GW34	Landrace	ATACC\|ATACC
152	GW37	Landrace	ATACC\|ATACC
153	GW58	Landrace	A\|A
154	GW59	Landrace	ATACC\|ATACC
155	GW9	Landrace	ATACC\|ATACC
156	s4	Weedy	ATACC\|ATACC
157	s6	Improved	ATACC\|ATACC
158	s7	Landrace	ATACC\|ATACC
159	s8	Landrace	ATACC\|ATACC
160	s9	Landrace	ATACC\|ATACC
161	J101	Landrace	ATACC\|ATACC
162	J103	Improved	ATACC\|ATACC
163	J112	Landrace	ATACC\|ATACC
164	J113	Improved	A\|A
165	J129	Improved	ATACC\|ATACC
166	J130	Improved	ATACC\|ATACC
167	J136	Improved	ATACC\|ATACC
168	J152	Improved	N\|N
169	J2	Landrace	ATACC\|ATACC
170	J20	Landrace	ATACC\|ATACC
171	J4	Landrace	ATACC\|ATACC
172	J42	Landrace	ATACC\|ATACC
173	J44	Landrace	ATACC\|ATACC
174	J49	Landrace	ATACC\|ATACC
175	J52	Landrace	ATACC\|ATACC
176	J53	Landrace	ATACC\|ATACC
177	J54	Landrace	ATACC\|ATACC
178	J57	Landrace	ATACC\|ATACC
179	J59	Landrace	ATACC\|ATACC
180	J64	Landrace	ATACC\|ATACC
181	J66	Landrace	ATACC\|ATACC
182	J67	Landrace	ATACC\|ATACC
183	J69	Landrace	ATACC\|ATACC
184	J87	Landrace	ATACC\|ATACC
185	J99	Landrace	ATACC\|ATACC
186	s45	Landrace	ATACC\|ATACC
187	s11	Improved	ATACC\|ATACC
188	s10	Improved	ATACC\|ATACC
189	s46	Improved	ATACC\|ATACC
190	s12	Improved	ATACC\|ATACC
191	s13	Landrace	ATACC\|ATACC
192	MHMD	Landrace	ATACC\|ATACC
193	s14	Improved	ATACC\|ATACC
194	s15	Improved	ATACC\|ATACC
195	s34	Weedy	ATACC\|ATACC
196	s33	Wild sorghum	ATACC\|ATACC
197	s21	Wild sorghum	ATACC\|ATACC
198	s16	Wild sorghum	ATACC\|ATACC
199	s44	Improved	ATACC\|ATACC
200	s35	Landrace	ATACC\|ATACC
201	s31	Wild sorghum	ATACC\|ATACC
202	s17	Improved	ATACC\|ATACC
203	s18	Improved	ATACC\|ATACC
204	s20	Improved	ATACC\|ATACC
205	s19	Improved	ATACC\|ATACC
206	s22	Landrace	ATACC\|ATACC
207	s23	Landrace	ATACC\|ATACC
208	s24	Landrace	ATACC\|ATACC
209	s25	Landrace	ATACC\|ATACC
210	s26	Landrace	ATACC\|ATACC
211	s27	Landrace	ATACC\|ATACC
212	s28	Landrace	ATACC\|ATACC
213	s29	Landrace	ATACC\|ATACC
214	s30	Landrace	ATACC\|ATACC
215	SL25	Wild sorghum	ATACC\|ATACC
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	A\|A
218	SL109	Wild sorghum	ATACC\|ATACC
219	SL12	Wild sorghum	ATACC\|ATACC
220	SL129	Wild sorghum	A\|A
221	SL130	Wild sorghum	N\|N
222	SL135	Wild sorghum	N\|N
223	SL136	Wild sorghum	ATACC\|ATACC
224	SL137	Wild sorghum	ATACC\|ATACC
225	SL138	Wild sorghum	ATACC\|ATACC
226	SL140	Wild sorghum	A\|A
227	SL141	Wild sorghum	A\|A
228	SL19	Wild sorghum	ATACC\|ATACC
229	SL28	Wild sorghum	ATACC\|ATACC
230	SL32	Wild sorghum	ATACC\|ATACC
231	SL35	Wild sorghum	N\|N
232	SL36	Wild sorghum	ATACC\|ATACC
233	SL37	Wild sorghum	ATACC\|ATACC
234	SL39	Wild sorghum	ATACC\|ATACC
235	SL41	Wild sorghum	ATACC\|ATACC
236	SL43	Wild sorghum	ATACC\|ATACC
237	SL47	Wild sorghum	ATACC\|A
238	SL49	Wild sorghum	ATACC\|ATACC
239	SL51	Wild sorghum	ATACC\|ATACC
240	SL53	Wild sorghum	ATACC\|ATACC
241	SL62	Wild sorghum	ATACC\|ATACC
242	SL83	Wild sorghum	ATACC\|A
243	SL97	Landrace	ATACC\|ATACC
244	s48	Improved	ATACC\|A
245	Tu13	Wild sorghum	ATACC\|ATACC
246	Tu14	Wild sorghum	ATACC\|ATACC
247	Tu30	Wild sorghum	ATACC\|ATACC
248	Tu5	Wild sorghum	ATACC\|ATACC
249	WSC5	Landrace	ATACC\|ATACC
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	N\|N
252	WSC30	Landrace	A\|A
253	WSC52	Landrace	N\|N
254	WSC6	Landrace	ATACC\|ATACC
255	WSC61	Landrace	ATACC\|ATACC
256	WSC71	Improved	ATACC\|ATACC
257	WSC72	Landrace	ATACC\|ATACC
258	WSC79	Landrace	ATACC\|ATACC
259	WSC94	Landrace	ATACC\|ATACC
260	WSC99	Landrace	ATACC\|ATACC
261	WSC100	Landrace	ATACC\|ATACC
262	WSC104	Landrace	ATACC\|ATACC
263	WSC105	Landrace	ATACC\|ATACC
264	WSC12	Landrace	ATACC\|ATACC
265	WSC13	Landrace	ATACC\|ATACC
266	WSC16	Landrace	ATACC\|ATACC
267	WSC17	Landrace	ATACC\|ATACC
268	WSC18	Landrace	ATACC\|ATACC
269	WSC20	Landrace	ATACC\|ATACC
270	WSC24	Landrace	ATACC\|ATACC
271	WSC25	Landrace	ATACC\|ATACC
272	WSC29	Landrace	ATACC\|ATACC
273	WSC31	Landrace	A\|A
274	WSC32	Landrace	N\|N
275	WSC34	Landrace	A\|A
276	WSC38	Landrace	A\|A
277	WSC39	Improved	ATACC\|ATACC
278	WSC40	Landrace	A\|A
279	WSC54	Landrace	ATACC\|ATACC
280	WSC56	Landrace	ATACC\|ATACC
281	WSC59	Landrace	A\|A
282	WSC68	Landrace	ATACC\|ATACC
283	WSC70	Landrace	ATACC\|ATACC
284	WSC73	Landrace	ATACC\|ATACC
285	WSC81	Landrace	ATACC\|ATACC
286	WSC85	Improved	ATACC\|ATACC
287	WSC91	Landrace	ATACC\|ATACC
288	WSC93	Landrace	ATACC\|ATACC
289	WSC98	Landrace	ATACC\|ATACC

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825266	Sobic.001G000100	upstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

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