sorgsd

Variation ID : sbi33825306

Variation Detail

Variation ID	sbi33825306
Type	INDEL
Position	Chr01 4338-4346
Ref /Alleles	GTTCTCCAA/ G
MAF	G: 0.004
5' Flank	AGTAACACCGGAATGGTGAGAACCCAATTT
3' Flank	TGCCAAACAATAGTAGTACCAATTTAGTGT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GTTCTCCAA\|GTTCTCCAA
2	103	Improved	GTTCTCCAA\|GTTCTCCAA
3	107	Improved	GTTCTCCAA\|GTTCTCCAA
4	11	Improved	GTTCTCCAA\|GTTCTCCAA
5	110	Improved	GTTCTCCAA\|GTTCTCCAA
6	123	Landrace	GTTCTCCAA\|GTTCTCCAA
7	131	Improved	GTTCTCCAA\|GTTCTCCAA
8	132	Improved	GTTCTCCAA\|GTTCTCCAA
9	135	Improved	GTTCTCCAA\|GTTCTCCAA
10	137	Improved	GTTCTCCAA\|GTTCTCCAA
11	138	Improved	GTTCTCCAA\|GTTCTCCAA
12	14	Improved	GTTCTCCAA\|GTTCTCCAA
13	140	Improved	GTTCTCCAA\|GTTCTCCAA
14	141	Improved	GTTCTCCAA\|GTTCTCCAA
15	144	Improved	GTTCTCCAA\|GTTCTCCAA
16	150	Improved	GTTCTCCAA\|GTTCTCCAA
17	154	Improved	GTTCTCCAA\|GTTCTCCAA
18	159	Landrace	GTTCTCCAA\|GTTCTCCAA
19	16	Improved	GTTCTCCAA\|GTTCTCCAA
20	161	Landrace	N\|N
21	167	Improved	GTTCTCCAA\|GTTCTCCAA
22	168	Improved	GTTCTCCAA\|GTTCTCCAA
23	170	Improved	N\|N
24	173	Improved	GTTCTCCAA\|GTTCTCCAA
25	175	Improved	GTTCTCCAA\|GTTCTCCAA
26	176	Improved	GTTCTCCAA\|GTTCTCCAA
27	182	Landrace	GTTCTCCAA\|GTTCTCCAA
28	186	Improved	GTTCTCCAA\|GTTCTCCAA
29	190	Improved	GTTCTCCAA\|GTTCTCCAA
30	192	Improved	GTTCTCCAA\|GTTCTCCAA
31	194	Improved	GTTCTCCAA\|GTTCTCCAA
32	195	Improved	GTTCTCCAA\|GTTCTCCAA
33	197	Improved	GTTCTCCAA\|GTTCTCCAA
34	J22	Landrace	GTTCTCCAA\|GTTCTCCAA
35	J26	Landrace	GTTCTCCAA\|GTTCTCCAA
36	J5	Landrace	GTTCTCCAA\|GTTCTCCAA
37	J50	Landrace	GTTCTCCAA\|GTTCTCCAA
38	2001	Landrace	GTTCTCCAA\|GTTCTCCAA
39	2005	Improved	GTTCTCCAA\|GTTCTCCAA
40	2008	Improved	GTTCTCCAA\|GTTCTCCAA
41	2009	Landrace	GTTCTCCAA\|GTTCTCCAA
42	201	Improved	GTTCTCCAA\|GTTCTCCAA
43	2010	Landrace	GTTCTCCAA\|GTTCTCCAA
44	2016	Improved	N\|N
45	2019	Improved	GTTCTCCAA\|GTTCTCCAA
46	202	Improved	GTTCTCCAA\|GTTCTCCAA
47	2021	Improved	GTTCTCCAA\|GTTCTCCAA
48	2023	Improved	GTTCTCCAA\|GTTCTCCAA
49	2026	Improved	GTTCTCCAA\|GTTCTCCAA
50	2029	Improved	GTTCTCCAA\|GTTCTCCAA
51	2030	Landrace	GTTCTCCAA\|GTTCTCCAA
52	2031	Landrace	GTTCTCCAA\|GTTCTCCAA
53	2036	Improved	GTTCTCCAA\|GTTCTCCAA
54	2037	Improved	GTTCTCCAA\|GTTCTCCAA
55	2038	Improved	GTTCTCCAA\|GTTCTCCAA
56	2039	Improved	GTTCTCCAA\|GTTCTCCAA
57	204	Improved	GTTCTCCAA\|GTTCTCCAA
58	2042	Improved	GTTCTCCAA\|GTTCTCCAA
59	2043	Improved	GTTCTCCAA\|GTTCTCCAA
60	2048	Improved	GTTCTCCAA\|GTTCTCCAA
61	2049	Improved	GTTCTCCAA\|GTTCTCCAA
62	205	Improved	GTTCTCCAA\|GTTCTCCAA
63	2050	Improved	GTTCTCCAA\|GTTCTCCAA
64	2052	Improved	GTTCTCCAA\|GTTCTCCAA
65	2054	Improved	GTTCTCCAA\|GTTCTCCAA
66	2056	Improved	GTTCTCCAA\|GTTCTCCAA
67	2059	Improved	GTTCTCCAA\|GTTCTCCAA
68	206	Improved	GTTCTCCAA\|GTTCTCCAA
69	2064	Improved	GTTCTCCAA\|GTTCTCCAA
70	2065	Improved	GTTCTCCAA\|GTTCTCCAA
71	2067	Improved	GTTCTCCAA\|GTTCTCCAA
72	2068	Improved	GTTCTCCAA\|GTTCTCCAA
73	2069	Improved	GTTCTCCAA\|GTTCTCCAA
74	2071	Improved	GTTCTCCAA\|GTTCTCCAA
75	2074	Improved	GTTCTCCAA\|GTTCTCCAA
76	2075	Improved	GTTCTCCAA\|GTTCTCCAA
77	2076	Improved	GTTCTCCAA\|GTTCTCCAA
78	2080	Improved	GTTCTCCAA\|GTTCTCCAA
79	2081	Improved	GTTCTCCAA\|GTTCTCCAA
80	2082	Improved	GTTCTCCAA\|GTTCTCCAA
81	2086	Improved	GTTCTCCAA\|GTTCTCCAA
82	2088	Improved	GTTCTCCAA\|GTTCTCCAA
83	260	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
84	261	Improved	GTTCTCCAA\|GTTCTCCAA
85	262	Improved	GTTCTCCAA\|GTTCTCCAA
86	263	Improved	GTTCTCCAA\|GTTCTCCAA
87	286	Improved	GTTCTCCAA\|GTTCTCCAA
88	29	Improved	GTTCTCCAA\|GTTCTCCAA
89	3	Improved	GTTCTCCAA\|GTTCTCCAA
90	302546	S.propinquum	GTTCTCCAA\|GTTCTCCAA
91	31	Improved	GTTCTCCAA\|GTTCTCCAA
92	32	Improved	GTTCTCCAA\|GTTCTCCAA
93	34	Improved	GTTCTCCAA\|GTTCTCCAA
94	346	Landrace	GTTCTCCAA\|GTTCTCCAA
95	348	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
96	353	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
97	355	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
98	357	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
99	364	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
100	367	Landrace	GTTCTCCAA\|GTTCTCCAA
101	s37	S.propinquum	GTTCTCCAA\|GTTCTCCAA
102	s38	S.propinquum	GTTCTCCAA\|GTTCTCCAA
103	370	Landrace	GTTCTCCAA\|GTTCTCCAA
104	377	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
105	392	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
106	394	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
107	40	Improved	GTTCTCCAA\|GTTCTCCAA
108	42	Improved	GTTCTCCAA\|GTTCTCCAA
109	43	Improved	GTTCTCCAA\|GTTCTCCAA
110	45	Improved	GTTCTCCAA\|GTTCTCCAA
111	47	Improved	GTTCTCCAA\|GTTCTCCAA
112	48	Improved	GTTCTCCAA\|GTTCTCCAA
113	51	Improved	GTTCTCCAA\|GTTCTCCAA
114	53	Improved	GTTCTCCAA\|GTTCTCCAA
115	56	Improved	GTTCTCCAA\|GTTCTCCAA
116	61	Improved	GTTCTCCAA\|GTTCTCCAA
117	62	Improved	GTTCTCCAA\|GTTCTCCAA
118	66	Landrace	GTTCTCCAA\|GTTCTCCAA
119	67	Improved	GTTCTCCAA\|GTTCTCCAA
120	68	Improved	GTTCTCCAA\|GTTCTCCAA
121	70	Improved	GTTCTCCAA\|GTTCTCCAA
122	73	Improved	GTTCTCCAA\|GTTCTCCAA
123	75	Improved	GTTCTCCAA\|GTTCTCCAA
124	88	Improved	GTTCTCCAA\|GTTCTCCAA
125	89	Improved	GTTCTCCAA\|GTTCTCCAA
126	91	Improved	GTTCTCCAA\|GTTCTCCAA
127	92	Improved	GTTCTCCAA\|GTTCTCCAA
128	93	Improved	GTTCTCCAA\|GTTCTCCAA
129	94	Improved	GTTCTCCAA\|GTTCTCCAA
130	95	Improved	GTTCTCCAA\|GTTCTCCAA
131	96	Improved	GTTCTCCAA\|GTTCTCCAA
132	97	Improved	GTTCTCCAA\|GTTCTCCAA
133	s1	Improved	GTTCTCCAA\|GTTCTCCAA
134	s36	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
135	s2	Landrace	GTTCTCCAA\|GTTCTCCAA
136	s3	Improved	GTTCTCCAA\|GTTCTCCAA
137	s32	Improved	GTTCTCCAA\|GTTCTCCAA
138	s43	Weedy	GTTCTCCAA\|GTTCTCCAA
139	s40	Landrace	GTTCTCCAA\|GTTCTCCAA
140	s41	Weedy	GTTCTCCAA\|GTTCTCCAA
141	s39	Landrace	GTTCTCCAA\|GTTCTCCAA
142	s42	Landrace	GTTCTCCAA\|GTTCTCCAA
143	s47	Improved	GTTCTCCAA\|GTTCTCCAA
144	s5	Landrace	GTTCTCCAA\|GTTCTCCAA
145	GW102	Landrace	GTTCTCCAA\|GTTCTCCAA
146	GW103	Landrace	GTTCTCCAA\|GTTCTCCAA
147	GW104	Landrace	GTTCTCCAA\|GTTCTCCAA
148	GW105	Landrace	GTTCTCCAA\|GTTCTCCAA
149	GW16	Landrace	GTTCTCCAA\|GTTCTCCAA
150	GW2	Landrace	GTTCTCCAA\|GTTCTCCAA
151	GW34	Landrace	GTTCTCCAA\|GTTCTCCAA
152	GW37	Landrace	GTTCTCCAA\|GTTCTCCAA
153	GW58	Landrace	GTTCTCCAA\|GTTCTCCAA
154	GW59	Landrace	GTTCTCCAA\|GTTCTCCAA
155	GW9	Landrace	GTTCTCCAA\|GTTCTCCAA
156	s4	Weedy	GTTCTCCAA\|GTTCTCCAA
157	s6	Improved	GTTCTCCAA\|GTTCTCCAA
158	s7	Landrace	GTTCTCCAA\|GTTCTCCAA
159	s8	Landrace	GTTCTCCAA\|GTTCTCCAA
160	s9	Landrace	GTTCTCCAA\|GTTCTCCAA
161	J101	Landrace	GTTCTCCAA\|GTTCTCCAA
162	J103	Improved	GTTCTCCAA\|GTTCTCCAA
163	J112	Landrace	GTTCTCCAA\|GTTCTCCAA
164	J113	Improved	GTTCTCCAA\|GTTCTCCAA
165	J129	Improved	GTTCTCCAA\|GTTCTCCAA
166	J130	Improved	GTTCTCCAA\|GTTCTCCAA
167	J136	Improved	GTTCTCCAA\|GTTCTCCAA
168	J152	Improved	GTTCTCCAA\|GTTCTCCAA
169	J2	Landrace	GTTCTCCAA\|GTTCTCCAA
170	J20	Landrace	GTTCTCCAA\|GTTCTCCAA
171	J4	Landrace	GTTCTCCAA\|GTTCTCCAA
172	J42	Landrace	GTTCTCCAA\|GTTCTCCAA
173	J44	Landrace	GTTCTCCAA\|GTTCTCCAA
174	J49	Landrace	GTTCTCCAA\|GTTCTCCAA
175	J52	Landrace	GTTCTCCAA\|GTTCTCCAA
176	J53	Landrace	GTTCTCCAA\|GTTCTCCAA
177	J54	Landrace	GTTCTCCAA\|GTTCTCCAA
178	J57	Landrace	GTTCTCCAA\|GTTCTCCAA
179	J59	Landrace	GTTCTCCAA\|GTTCTCCAA
180	J64	Landrace	GTTCTCCAA\|GTTCTCCAA
181	J66	Landrace	GTTCTCCAA\|GTTCTCCAA
182	J67	Landrace	GTTCTCCAA\|GTTCTCCAA
183	J69	Landrace	GTTCTCCAA\|GTTCTCCAA
184	J87	Landrace	GTTCTCCAA\|GTTCTCCAA
185	J99	Landrace	GTTCTCCAA\|GTTCTCCAA
186	s45	Landrace	GTTCTCCAA\|GTTCTCCAA
187	s11	Improved	GTTCTCCAA\|GTTCTCCAA
188	s10	Improved	GTTCTCCAA\|GTTCTCCAA
189	s46	Improved	GTTCTCCAA\|GTTCTCCAA
190	s12	Improved	GTTCTCCAA\|GTTCTCCAA
191	s13	Landrace	GTTCTCCAA\|GTTCTCCAA
192	MHMD	Landrace	GTTCTCCAA\|GTTCTCCAA
193	s14	Improved	GTTCTCCAA\|GTTCTCCAA
194	s15	Improved	GTTCTCCAA\|GTTCTCCAA
195	s34	Weedy	GTTCTCCAA\|GTTCTCCAA
196	s33	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
197	s21	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
198	s16	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
199	s44	Improved	GTTCTCCAA\|GTTCTCCAA
200	s35	Landrace	GTTCTCCAA\|GTTCTCCAA
201	s31	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
202	s17	Improved	GTTCTCCAA\|GTTCTCCAA
203	s18	Improved	GTTCTCCAA\|GTTCTCCAA
204	s20	Improved	GTTCTCCAA\|GTTCTCCAA
205	s19	Improved	GTTCTCCAA\|GTTCTCCAA
206	s22	Landrace	GTTCTCCAA\|GTTCTCCAA
207	s23	Landrace	GTTCTCCAA\|GTTCTCCAA
208	s24	Landrace	GTTCTCCAA\|GTTCTCCAA
209	s25	Landrace	GTTCTCCAA\|GTTCTCCAA
210	s26	Landrace	GTTCTCCAA\|GTTCTCCAA
211	s27	Landrace	GTTCTCCAA\|GTTCTCCAA
212	s28	Landrace	GTTCTCCAA\|GTTCTCCAA
213	s29	Landrace	GTTCTCCAA\|GTTCTCCAA
214	s30	Landrace	GTTCTCCAA\|GTTCTCCAA
215	SL25	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
216	SL105	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
217	SL108	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
218	SL109	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
219	SL12	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
220	SL129	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
221	SL130	Wild sorghum	G\|G
222	SL135	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
223	SL136	Wild sorghum	N\|N
224	SL137	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
225	SL138	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
226	SL140	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
227	SL141	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
228	SL19	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
229	SL28	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
230	SL32	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
231	SL35	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
232	SL36	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
233	SL37	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
234	SL39	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
235	SL41	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
238	SL49	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
239	SL51	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
240	SL53	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
241	SL62	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	GTTCTCCAA\|GTTCTCCAA
244	s48	Improved	GTTCTCCAA\|GTTCTCCAA
245	Tu13	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
246	Tu14	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
247	Tu30	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
248	Tu5	Wild sorghum	GTTCTCCAA\|GTTCTCCAA
249	WSC5	Landrace	GTTCTCCAA\|GTTCTCCAA
250	WSC15	Landrace	GTTCTCCAA\|GTTCTCCAA
251	WSC19	Landrace	GTTCTCCAA\|GTTCTCCAA
252	WSC30	Landrace	GTTCTCCAA\|GTTCTCCAA
253	WSC52	Landrace	GTTCTCCAA\|GTTCTCCAA
254	WSC6	Landrace	GTTCTCCAA\|GTTCTCCAA
255	WSC61	Landrace	GTTCTCCAA\|GTTCTCCAA
256	WSC71	Improved	N\|N
257	WSC72	Landrace	GTTCTCCAA\|GTTCTCCAA
258	WSC79	Landrace	GTTCTCCAA\|GTTCTCCAA
259	WSC94	Landrace	GTTCTCCAA\|GTTCTCCAA
260	WSC99	Landrace	GTTCTCCAA\|GTTCTCCAA
261	WSC100	Landrace	GTTCTCCAA\|GTTCTCCAA
262	WSC104	Landrace	GTTCTCCAA\|GTTCTCCAA
263	WSC105	Landrace	GTTCTCCAA\|GTTCTCCAA
264	WSC12	Landrace	GTTCTCCAA\|GTTCTCCAA
265	WSC13	Landrace	GTTCTCCAA\|GTTCTCCAA
266	WSC16	Landrace	GTTCTCCAA\|GTTCTCCAA
267	WSC17	Landrace	GTTCTCCAA\|GTTCTCCAA
268	WSC18	Landrace	GTTCTCCAA\|GTTCTCCAA
269	WSC20	Landrace	GTTCTCCAA\|GTTCTCCAA
270	WSC24	Landrace	GTTCTCCAA\|GTTCTCCAA
271	WSC25	Landrace	GTTCTCCAA\|GTTCTCCAA
272	WSC29	Landrace	GTTCTCCAA\|GTTCTCCAA
273	WSC31	Landrace	GTTCTCCAA\|GTTCTCCAA
274	WSC32	Landrace	GTTCTCCAA\|GTTCTCCAA
275	WSC34	Landrace	GTTCTCCAA\|GTTCTCCAA
276	WSC38	Landrace	GTTCTCCAA\|GTTCTCCAA
277	WSC39	Improved	GTTCTCCAA\|GTTCTCCAA
278	WSC40	Landrace	GTTCTCCAA\|GTTCTCCAA
279	WSC54	Landrace	GTTCTCCAA\|GTTCTCCAA
280	WSC56	Landrace	GTTCTCCAA\|GTTCTCCAA
281	WSC59	Landrace	GTTCTCCAA\|GTTCTCCAA
282	WSC68	Landrace	GTTCTCCAA\|GTTCTCCAA
283	WSC70	Landrace	GTTCTCCAA\|GTTCTCCAA
284	WSC73	Landrace	GTTCTCCAA\|GTTCTCCAA
285	WSC81	Landrace	GTTCTCCAA\|GTTCTCCAA
286	WSC85	Improved	GTTCTCCAA\|GTTCTCCAA
287	WSC91	Landrace	GTTCTCCAA\|GTTCTCCAA
288	WSC93	Landrace	GTTCTCCAA\|GTTCTCCAA
289	WSC98	Landrace	GTTCTCCAA\|GTTCTCCAA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825306	Sobic.001G000100	downstream gene variant \|MODIFIER	Sobic.001G000100.1	mRNA			Sobic.001G000100.1.p

Genome Browser