Variation ID : sbi33825347

Variation Detail



Variation ID sbi33825347
Type INDEL
Position Chr01 9928-9930
Ref /Alleles CCT/ C or *
MAF *: 0.018
5' Flank CCAAGTCAAGCTACACCCACTCAAGTTTCA
3' Flank ACACCCACTCAAGTTTCACCTACACCGACA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved CCT|CCT
2 103 Improved CCT|CCT
3 107 Improved CCT|CCT
4 11 Improved CCT|CCT
5 110 Improved CCT|CCT
6 123 Landrace CCT|CCT
7 131 Improved CCT|CCT
8 132 Improved CCT|CCT
9 135 Improved CCT|CCT
10 137 Improved CCT|CCT
11 138 Improved CCT|CCT
12 14 Improved CCT|CCT
13 140 Improved CCT|CCT
14 141 Improved CCT|CCT
15 144 Improved CCT|CCT
16 150 Improved CCT|CCT
17 154 Improved CCT|CCT
18 159 Landrace CCT|CCT
19 16 Improved CCT|CCT
20 161 Landrace CCT|CCT
21 167 Improved CCT|CCT
22 168 Improved CCT|CCT
23 170 Improved CCT|CCT
24 173 Improved CCT|CCT
25 175 Improved CCT|CCT
26 176 Improved CCT|CCT
27 182 Landrace CCT|CCT
28 186 Improved CCT|CCT
29 190 Improved CCT|CCT
30 192 Improved CCT|CCT
31 194 Improved CCT|CCT
32 195 Improved CCT|CCT
33 197 Improved CCT|CCT
34 J22 Landrace CCT|CCT
35 J26 Landrace CCT|CCT
36 J5 Landrace CCT|CCT
37 J50 Landrace CCT|CCT
38 2001 Landrace CCT|CCT
39 2005 Improved N|N
40 2008 Improved CCT|CCT
41 2009 Landrace CCT|CCT
42 201 Improved CCT|CCT
43 2010 Landrace CCT|CCT
44 2016 Improved CCT|CCT
45 2019 Improved CCT|CCT
46 202 Improved CCT|CCT
47 2021 Improved CCT|CCT
48 2023 Improved CCT|CCT
49 2026 Improved CCT|CCT
50 2029 Improved CCT|CCT
51 2030 Landrace CCT|CCT
52 2031 Landrace CCT|CCT
53 2036 Improved CCT|CCT
54 2037 Improved CCT|CCT
55 2038 Improved CCT|CCT
56 2039 Improved N|N
57 204 Improved CCT|CCT
58 2042 Improved CCT|CCT
59 2043 Improved CCT|CCT
60 2048 Improved CCT|CCT
61 2049 Improved CCT|CCT
62 205 Improved CCT|CCT
63 2050 Improved CCT|CCT
64 2052 Improved CCT|CCT
65 2054 Improved CCT|CCT
66 2056 Improved CCT|CCT
67 2059 Improved CCT|CCT
68 206 Improved CCT|CCT
69 2064 Improved CCT|CCT
70 2065 Improved CCT|CCT
71 2067 Improved CCT|CCT
72 2068 Improved CCT|CCT
73 2069 Improved CCT|CCT
74 2071 Improved CCT|CCT
75 2074 Improved CCT|CCT
76 2075 Improved CCT|CCT
77 2076 Improved CCT|CCT
78 2080 Improved CCT|CCT
79 2081 Improved CCT|CCT
80 2082 Improved CCT|CCT
81 2086 Improved CCT|CCT
82 2088 Improved CCT|CCT
83 260 Wild sorghum CCT|CCT
84 261 Improved CCT|CCT
85 262 Improved CCT|CCT
86 263 Improved CCT|CCT
87 286 Improved CCT|CCT
88 29 Improved CCT|CCT
89 3 Improved CCT|CCT
90 302546 S.propinquum C|C
91 31 Improved CCT|CCT
92 32 Improved CCT|CCT
93 34 Improved CCT|CCT
94 346 Landrace CCT|CCT
95 348 Wild sorghum CCT|CCT
96 353 Wild sorghum CCT|CCT
97 355 Wild sorghum CCT|CCT
98 357 Wild sorghum CCT|CCT
99 364 Wild sorghum N|N
100 367 Landrace CCT|CCT
101 s37 S.propinquum C|C
102 s38 S.propinquum CCT|C
103 370 Landrace CCT|CCT
104 377 Wild sorghum CCT|CCT
105 392 Wild sorghum CCT|CCT
106 394 Wild sorghum CCT|CCT
107 40 Improved CCT|CCT
108 42 Improved CCT|CCT
109 43 Improved CCT|CCT
110 45 Improved CCT|CCT
111 47 Improved CCT|CCT
112 48 Improved CCT|CCT
113 51 Improved CCT|CCT
114 53 Improved CCT|CCT
115 56 Improved CCT|CCT
116 61 Improved CCT|CCT
117 62 Improved CCT|CCT
118 66 Landrace N|N
119 67 Improved CCT|CCT
120 68 Improved CCT|CCT
121 70 Improved CCT|CCT
122 73 Improved CCT|CCT
123 75 Improved CCT|CCT
124 88 Improved CCT|CCT
125 89 Improved CCT|CCT
126 91 Improved CCT|CCT
127 92 Improved CCT|CCT
128 93 Improved CCT|CCT
129 94 Improved CCT|CCT
130 95 Improved CCT|CCT
131 96 Improved CCT|CCT
132 97 Improved CCT|CCT
133 s1 Improved CCT|CCT
134 s36 Wild sorghum CCT|CCT
135 s2 Landrace CCT|CCT
136 s3 Improved CCT|CCT
137 s32 Improved CCT|CCT
138 s43 Weedy CCT|CCT
139 s40 Landrace CCT|CCT
140 s41 Weedy CCT|CCT
141 s39 Landrace CCT|CCT
142 s42 Landrace CCT|CCT
143 s47 Improved CCT|CCT
144 s5 Landrace CCT|CCT
145 GW102 Landrace CCT|CCT
146 GW103 Landrace CCT|CCT
147 GW104 Landrace CCT|CCT
148 GW105 Landrace CCT|CCT
149 GW16 Landrace CCT|CCT
150 GW2 Landrace CCT|CCT
151 GW34 Landrace CCT|CCT
152 GW37 Landrace CCT|CCT
153 GW58 Landrace CCT|CCT
154 GW59 Landrace CCT|CCT
155 GW9 Landrace CCT|CCT
156 s4 Weedy CCT|CCT
157 s6 Improved CCT|CCT
158 s7 Landrace CCT|CCT
159 s8 Landrace CCT|CCT
160 s9 Landrace CCT|CCT
161 J101 Landrace CCT|CCT
162 J103 Improved CCT|CCT
163 J112 Landrace CCT|CCT
164 J113 Improved CCT|CCT
165 J129 Improved CCT|CCT
166 J130 Improved CCT|CCT
167 J136 Improved CCT|CCT
168 J152 Improved CCT|CCT
169 J2 Landrace CCT|CCT
170 J20 Landrace CCT|CCT
171 J4 Landrace CCT|CCT
172 J42 Landrace CCT|CCT
173 J44 Landrace CCT|CCT
174 J49 Landrace CCT|CCT
175 J52 Landrace CCT|CCT
176 J53 Landrace CCT|CCT
177 J54 Landrace CCT|CCT
178 J57 Landrace CCT|CCT
179 J59 Landrace CCT|CCT
180 J64 Landrace CCT|CCT
181 J66 Landrace CCT|CCT
182 J67 Landrace CCT|CCT
183 J69 Landrace CCT|CCT
184 J87 Landrace CCT|CCT
185 J99 Landrace CCT|CCT
186 s45 Landrace CCT|CCT
187 s11 Improved CCT|CCT
188 s10 Improved CCT|CCT
189 s46 Improved CCT|CCT
190 s12 Improved CCT|CCT
191 s13 Landrace CCT|CCT
192 MHMD Landrace CCT|CCT
193 s14 Improved CCT|CCT
194 s15 Improved CCT|CCT
195 s34 Weedy CCT|CCT
196 s33 Wild sorghum CCT|CCT
197 s21 Wild sorghum CCT|CCT
198 s16 Wild sorghum CCT|CCT
199 s44 Improved CCT|CCT
200 s35 Landrace CCT|CCT
201 s31 Wild sorghum CCT|CCT
202 s17 Improved CCT|CCT
203 s18 Improved CCT|CCT
204 s20 Improved CCT|CCT
205 s19 Improved CCT|CCT
206 s22 Landrace CCT|CCT
207 s23 Landrace CCT|CCT
208 s24 Landrace CCT|CCT
209 s25 Landrace CCT|CCT
210 s26 Landrace CCT|CCT
211 s27 Landrace CCT|CCT
212 s28 Landrace CCT|CCT
213 s29 Landrace *|*
214 s30 Landrace CCT|CCT
215 SL25 Wild sorghum *|*
216 SL105 Wild sorghum CCT|CCT
217 SL108 Wild sorghum CCT|CCT
218 SL109 Wild sorghum CCT|CCT
219 SL12 Wild sorghum CCT|CCT
220 SL129 Wild sorghum CCT|CCT
221 SL130 Wild sorghum CCT|CCT
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum CCT|CCT
224 SL137 Wild sorghum CCT|CCT
225 SL138 Wild sorghum CCT|CCT
226 SL140 Wild sorghum CCT|CCT
227 SL141 Wild sorghum CCT|CCT
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum CCT|CCT
230 SL32 Wild sorghum *|*
231 SL35 Wild sorghum CCT|CCT
232 SL36 Wild sorghum CCT|CCT
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum CCT|CCT
235 SL41 Wild sorghum CCT|CCT
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum CCT|CCT
238 SL49 Wild sorghum *|*
239 SL51 Wild sorghum CCT|CCT
240 SL53 Wild sorghum CCT|CCT
241 SL62 Wild sorghum *|*
242 SL83 Wild sorghum CCT|CCT
243 SL97 Landrace CCT|CCT
244 s48 Improved CCT|CCT
245 Tu13 Wild sorghum CCT|CCT
246 Tu14 Wild sorghum CCT|CCT
247 Tu30 Wild sorghum CCT|CCT
248 Tu5 Wild sorghum CCT|CCT
249 WSC5 Landrace CCT|CCT
250 WSC15 Landrace CCT|CCT
251 WSC19 Landrace CCT|CCT
252 WSC30 Landrace CCT|CCT
253 WSC52 Landrace CCT|CCT
254 WSC6 Landrace CCT|CCT
255 WSC61 Landrace CCT|CCT
256 WSC71 Improved CCT|CCT
257 WSC72 Landrace CCT|CCT
258 WSC79 Landrace CCT|CCT
259 WSC94 Landrace CCT|CCT
260 WSC99 Landrace CCT|CCT
261 WSC100 Landrace CCT|CCT
262 WSC104 Landrace CCT|CCT
263 WSC105 Landrace CCT|CCT
264 WSC12 Landrace CCT|CCT
265 WSC13 Landrace CCT|CCT
266 WSC16 Landrace CCT|CCT
267 WSC17 Landrace CCT|CCT
268 WSC18 Landrace CCT|CCT
269 WSC20 Landrace CCT|CCT
270 WSC24 Landrace CCT|CCT
271 WSC25 Landrace CCT|CCT
272 WSC29 Landrace CCT|CCT
273 WSC31 Landrace N|N
274 WSC32 Landrace CCT|CCT
275 WSC34 Landrace CCT|CCT
276 WSC38 Landrace CCT|CCT
277 WSC39 Improved CCT|CCT
278 WSC40 Landrace CCT|CCT
279 WSC54 Landrace CCT|CCT
280 WSC56 Landrace CCT|CCT
281 WSC59 Landrace CCT|CCT
282 WSC68 Landrace CCT|CCT
283 WSC70 Landrace CCT|CCT
284 WSC73 Landrace CCT|CCT
285 WSC81 Landrace CCT|CCT
286 WSC85 Improved CCT|CCT
287 WSC91 Landrace CCT|CCT
288 WSC93 Landrace CCT|CCT
289 WSC98 Landrace CCT|CCT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825347 Sobic.001G000200 downstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser