sorgsd

Variation ID : sbi33825367

Variation Detail

Variation ID	sbi33825367
Type	INDEL
Position	Chr01 11121-11131
Ref /Alleles	CTAGTCAAAGA/ C
MAF	C: 0.009
5' Flank	ATATAGTCATACTCTATTCTGAATTTCTCG
3' Flank	TAACAAAAATAGCATATTCTGGATTTCTCA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
2	103	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
3	107	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
4	11	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
5	110	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
6	123	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
7	131	Improved	N\|N
8	132	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
9	135	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
10	137	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
11	138	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
12	14	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
13	140	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
14	141	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
15	144	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
16	150	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
17	154	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
18	159	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
19	16	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
20	161	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
21	167	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
22	168	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
23	170	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
24	173	Improved	N\|N
25	175	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
26	176	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
27	182	Landrace	N\|N
28	186	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
29	190	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
30	192	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
31	194	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
32	195	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
33	197	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
34	J22	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
35	J26	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
36	J5	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
37	J50	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
38	2001	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
39	2005	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
40	2008	Improved	N\|N
41	2009	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
42	201	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
43	2010	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
44	2016	Improved	N\|N
45	2019	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
46	202	Improved	N\|N
47	2021	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
48	2023	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
49	2026	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
50	2029	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
51	2030	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
52	2031	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
53	2036	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
54	2037	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
55	2038	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
56	2039	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
57	204	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
58	2042	Improved	CTAGTCAAAGA\|C
59	2043	Improved	CTAGTCAAAGA\|C
60	2048	Improved	CTAGTCAAAGA\|C
61	2049	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
62	205	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
63	2050	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
64	2052	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
65	2054	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
66	2056	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
67	2059	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
68	206	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
69	2064	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
70	2065	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
71	2067	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
72	2068	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
73	2069	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
74	2071	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
75	2074	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
76	2075	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
77	2076	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
78	2080	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
79	2081	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
80	2082	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
81	2086	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
82	2088	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
83	260	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
84	261	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
85	262	Improved	N\|N
86	263	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
87	286	Improved	N\|N
88	29	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
89	3	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
90	302546	S.propinquum	CTAGTCAAAGA\|CTAGTCAAAGA
91	31	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
92	32	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
93	34	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
94	346	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
95	348	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
96	353	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
97	355	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
98	357	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
99	364	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
100	367	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
101	s37	S.propinquum	CTAGTCAAAGA\|CTAGTCAAAGA
102	s38	S.propinquum	CTAGTCAAAGA\|CTAGTCAAAGA
103	370	Landrace	N\|N
104	377	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
105	392	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
106	394	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
107	40	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
108	42	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
109	43	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
110	45	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
111	47	Improved	N\|N
112	48	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
113	51	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
114	53	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
115	56	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
116	61	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
117	62	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
118	66	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
119	67	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
120	68	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
121	70	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
122	73	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
123	75	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
124	88	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
125	89	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
126	91	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
127	92	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
128	93	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
129	94	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
130	95	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
131	96	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
132	97	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
133	s1	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
134	s36	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
135	s2	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
136	s3	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
137	s32	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
138	s43	Weedy	CTAGTCAAAGA\|CTAGTCAAAGA
139	s40	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
140	s41	Weedy	CTAGTCAAAGA\|CTAGTCAAAGA
141	s39	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
142	s42	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
143	s47	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
144	s5	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
145	GW102	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
146	GW103	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
147	GW104	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
148	GW105	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
149	GW16	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
150	GW2	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
151	GW34	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
152	GW37	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
153	GW58	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
154	GW59	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
155	GW9	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
156	s4	Weedy	CTAGTCAAAGA\|CTAGTCAAAGA
157	s6	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
158	s7	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
159	s8	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
160	s9	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
161	J101	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
162	J103	Improved	N\|N
163	J112	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
164	J113	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
165	J129	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
166	J130	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
167	J136	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
168	J152	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
169	J2	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
170	J20	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
171	J4	Landrace	N\|N
172	J42	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
173	J44	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
174	J49	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
175	J52	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
176	J53	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
177	J54	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
178	J57	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
179	J59	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
180	J64	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
181	J66	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
182	J67	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
183	J69	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
184	J87	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
185	J99	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
186	s45	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
187	s11	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
188	s10	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
189	s46	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
190	s12	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
191	s13	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
192	MHMD	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
193	s14	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
194	s15	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
195	s34	Weedy	CTAGTCAAAGA\|CTAGTCAAAGA
196	s33	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
197	s21	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
198	s16	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
199	s44	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
200	s35	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
201	s31	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
202	s17	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
203	s18	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
204	s20	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
205	s19	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
206	s22	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
207	s23	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
208	s24	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
209	s25	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
210	s26	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
211	s27	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
212	s28	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
213	s29	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
214	s30	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
215	SL25	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
216	SL105	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
217	SL108	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
218	SL109	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
219	SL12	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
220	SL129	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
221	SL130	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
222	SL135	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
223	SL136	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
224	SL137	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
225	SL138	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
226	SL140	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
227	SL141	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
228	SL19	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
229	SL28	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
230	SL32	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
231	SL35	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
232	SL36	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
233	SL37	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
234	SL39	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
235	SL41	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
236	SL43	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
237	SL47	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
238	SL49	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
239	SL51	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
240	SL53	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
241	SL62	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
242	SL83	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
243	SL97	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
244	s48	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
245	Tu13	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
246	Tu14	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
247	Tu30	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
248	Tu5	Wild sorghum	CTAGTCAAAGA\|CTAGTCAAAGA
249	WSC5	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
250	WSC15	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
251	WSC19	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
254	WSC6	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
255	WSC61	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
256	WSC71	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
257	WSC72	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
258	WSC79	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
259	WSC94	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
260	WSC99	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
261	WSC100	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
262	WSC104	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
263	WSC105	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
264	WSC12	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
265	WSC13	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
266	WSC16	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
267	WSC17	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
268	WSC18	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
269	WSC20	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
270	WSC24	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
271	WSC25	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
272	WSC29	Landrace	CTAGTCAAAGA\|C
273	WSC31	Landrace	CTAGTCAAAGA\|C
274	WSC32	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
275	WSC34	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
276	WSC38	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
277	WSC39	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
278	WSC40	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
279	WSC54	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
280	WSC56	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
281	WSC59	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
282	WSC68	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
283	WSC70	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
284	WSC73	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
285	WSC81	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
286	WSC85	Improved	CTAGTCAAAGA\|CTAGTCAAAGA
287	WSC91	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
288	WSC93	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA
289	WSC98	Landrace	CTAGTCAAAGA\|CTAGTCAAAGA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825367	Sobic.001G000200	downstream gene variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

Genome Browser