sorgsd

Variation ID : sbi33825385

Variation Detail

Variation ID	sbi33825385
Type	INDEL
Position	Chr01 13078-13081
Ref /Alleles	GAGA/ G
MAF	G: 0.004
5' Flank	TCACAGGGAAAAGCATCGGACAGCTAGATG
3' Flank	AGAAGTTTTTACCAGCCTACGCATCAATCT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GAGA\|GAGA
2	103	Improved	GAGA\|GAGA
3	107	Improved	GAGA\|GAGA
4	11	Improved	GAGA\|GAGA
5	110	Improved	GAGA\|GAGA
6	123	Landrace	GAGA\|GAGA
7	131	Improved	GAGA\|GAGA
8	132	Improved	GAGA\|GAGA
9	135	Improved	GAGA\|GAGA
10	137	Improved	GAGA\|GAGA
11	138	Improved	GAGA\|GAGA
12	14	Improved	GAGA\|GAGA
13	140	Improved	GAGA\|GAGA
14	141	Improved	GAGA\|GAGA
15	144	Improved	GAGA\|GAGA
16	150	Improved	GAGA\|GAGA
17	154	Improved	GAGA\|GAGA
18	159	Landrace	GAGA\|GAGA
19	16	Improved	GAGA\|GAGA
20	161	Landrace	GAGA\|GAGA
21	167	Improved	GAGA\|GAGA
22	168	Improved	GAGA\|GAGA
23	170	Improved	N\|N
24	173	Improved	GAGA\|GAGA
25	175	Improved	GAGA\|GAGA
26	176	Improved	GAGA\|GAGA
27	182	Landrace	GAGA\|GAGA
28	186	Improved	GAGA\|GAGA
29	190	Improved	GAGA\|GAGA
30	192	Improved	GAGA\|GAGA
31	194	Improved	GAGA\|GAGA
32	195	Improved	GAGA\|GAGA
33	197	Improved	GAGA\|GAGA
34	J22	Landrace	GAGA\|GAGA
35	J26	Landrace	GAGA\|GAGA
36	J5	Landrace	GAGA\|GAGA
37	J50	Landrace	GAGA\|GAGA
38	2001	Landrace	GAGA\|GAGA
39	2005	Improved	GAGA\|GAGA
40	2008	Improved	GAGA\|GAGA
41	2009	Landrace	GAGA\|GAGA
42	201	Improved	GAGA\|GAGA
43	2010	Landrace	GAGA\|GAGA
44	2016	Improved	GAGA\|GAGA
45	2019	Improved	GAGA\|GAGA
46	202	Improved	GAGA\|GAGA
47	2021	Improved	GAGA\|GAGA
48	2023	Improved	GAGA\|GAGA
49	2026	Improved	GAGA\|GAGA
50	2029	Improved	GAGA\|GAGA
51	2030	Landrace	GAGA\|GAGA
52	2031	Landrace	GAGA\|GAGA
53	2036	Improved	GAGA\|GAGA
54	2037	Improved	GAGA\|GAGA
55	2038	Improved	GAGA\|GAGA
56	2039	Improved	GAGA\|GAGA
57	204	Improved	GAGA\|GAGA
58	2042	Improved	GAGA\|GAGA
59	2043	Improved	GAGA\|GAGA
60	2048	Improved	GAGA\|GAGA
61	2049	Improved	GAGA\|GAGA
62	205	Improved	GAGA\|GAGA
63	2050	Improved	GAGA\|GAGA
64	2052	Improved	GAGA\|GAGA
65	2054	Improved	GAGA\|GAGA
66	2056	Improved	GAGA\|GAGA
67	2059	Improved	GAGA\|GAGA
68	206	Improved	GAGA\|GAGA
69	2064	Improved	GAGA\|GAGA
70	2065	Improved	GAGA\|GAGA
71	2067	Improved	GAGA\|GAGA
72	2068	Improved	GAGA\|GAGA
73	2069	Improved	GAGA\|GAGA
74	2071	Improved	GAGA\|GAGA
75	2074	Improved	GAGA\|GAGA
76	2075	Improved	GAGA\|GAGA
77	2076	Improved	GAGA\|GAGA
78	2080	Improved	GAGA\|GAGA
79	2081	Improved	GAGA\|GAGA
80	2082	Improved	GAGA\|GAGA
81	2086	Improved	GAGA\|GAGA
82	2088	Improved	GAGA\|GAGA
83	260	Wild sorghum	GAGA\|GAGA
84	261	Improved	GAGA\|GAGA
85	262	Improved	GAGA\|GAGA
86	263	Improved	GAGA\|GAGA
87	286	Improved	GAGA\|GAGA
88	29	Improved	GAGA\|GAGA
89	3	Improved	GAGA\|GAGA
90	302546	S.propinquum	GAGA\|GAGA
91	31	Improved	GAGA\|GAGA
92	32	Improved	GAGA\|GAGA
93	34	Improved	GAGA\|GAGA
94	346	Landrace	GAGA\|GAGA
95	348	Wild sorghum	GAGA\|GAGA
96	353	Wild sorghum	GAGA\|GAGA
97	355	Wild sorghum	GAGA\|GAGA
98	357	Wild sorghum	GAGA\|GAGA
99	364	Wild sorghum	GAGA\|GAGA
100	367	Landrace	GAGA\|GAGA
101	s37	S.propinquum	GAGA\|GAGA
102	s38	S.propinquum	GAGA\|GAGA
103	370	Landrace	GAGA\|GAGA
104	377	Wild sorghum	GAGA\|GAGA
105	392	Wild sorghum	GAGA\|GAGA
106	394	Wild sorghum	GAGA\|GAGA
107	40	Improved	GAGA\|GAGA
108	42	Improved	GAGA\|GAGA
109	43	Improved	GAGA\|GAGA
110	45	Improved	GAGA\|GAGA
111	47	Improved	GAGA\|GAGA
112	48	Improved	GAGA\|GAGA
113	51	Improved	GAGA\|GAGA
114	53	Improved	GAGA\|GAGA
115	56	Improved	GAGA\|GAGA
116	61	Improved	GAGA\|GAGA
117	62	Improved	GAGA\|GAGA
118	66	Landrace	GAGA\|GAGA
119	67	Improved	GAGA\|GAGA
120	68	Improved	GAGA\|GAGA
121	70	Improved	GAGA\|GAGA
122	73	Improved	GAGA\|GAGA
123	75	Improved	GAGA\|GAGA
124	88	Improved	GAGA\|GAGA
125	89	Improved	GAGA\|GAGA
126	91	Improved	GAGA\|GAGA
127	92	Improved	GAGA\|GAGA
128	93	Improved	GAGA\|GAGA
129	94	Improved	GAGA\|GAGA
130	95	Improved	GAGA\|GAGA
131	96	Improved	GAGA\|GAGA
132	97	Improved	GAGA\|GAGA
133	s1	Improved	GAGA\|GAGA
134	s36	Wild sorghum	GAGA\|GAGA
135	s2	Landrace	GAGA\|GAGA
136	s3	Improved	GAGA\|GAGA
137	s32	Improved	GAGA\|GAGA
138	s43	Weedy	GAGA\|GAGA
139	s40	Landrace	GAGA\|GAGA
140	s41	Weedy	GAGA\|GAGA
141	s39	Landrace	GAGA\|GAGA
142	s42	Landrace	GAGA\|GAGA
143	s47	Improved	GAGA\|GAGA
144	s5	Landrace	GAGA\|GAGA
145	GW102	Landrace	GAGA\|GAGA
146	GW103	Landrace	GAGA\|GAGA
147	GW104	Landrace	GAGA\|GAGA
148	GW105	Landrace	GAGA\|GAGA
149	GW16	Landrace	GAGA\|GAGA
150	GW2	Landrace	GAGA\|GAGA
151	GW34	Landrace	GAGA\|GAGA
152	GW37	Landrace	GAGA\|GAGA
153	GW58	Landrace	GAGA\|GAGA
154	GW59	Landrace	GAGA\|GAGA
155	GW9	Landrace	GAGA\|GAGA
156	s4	Weedy	GAGA\|GAGA
157	s6	Improved	GAGA\|GAGA
158	s7	Landrace	GAGA\|GAGA
159	s8	Landrace	GAGA\|GAGA
160	s9	Landrace	GAGA\|GAGA
161	J101	Landrace	GAGA\|GAGA
162	J103	Improved	GAGA\|GAGA
163	J112	Landrace	GAGA\|GAGA
164	J113	Improved	GAGA\|GAGA
165	J129	Improved	GAGA\|GAGA
166	J130	Improved	GAGA\|GAGA
167	J136	Improved	GAGA\|GAGA
168	J152	Improved	GAGA\|GAGA
169	J2	Landrace	GAGA\|GAGA
170	J20	Landrace	GAGA\|GAGA
171	J4	Landrace	GAGA\|GAGA
172	J42	Landrace	GAGA\|GAGA
173	J44	Landrace	GAGA\|GAGA
174	J49	Landrace	GAGA\|GAGA
175	J52	Landrace	GAGA\|GAGA
176	J53	Landrace	GAGA\|GAGA
177	J54	Landrace	GAGA\|GAGA
178	J57	Landrace	GAGA\|GAGA
179	J59	Landrace	GAGA\|GAGA
180	J64	Landrace	GAGA\|GAGA
181	J66	Landrace	GAGA\|GAGA
182	J67	Landrace	GAGA\|GAGA
183	J69	Landrace	GAGA\|GAGA
184	J87	Landrace	GAGA\|GAGA
185	J99	Landrace	GAGA\|GAGA
186	s45	Landrace	GAGA\|GAGA
187	s11	Improved	GAGA\|GAGA
188	s10	Improved	GAGA\|GAGA
189	s46	Improved	GAGA\|GAGA
190	s12	Improved	GAGA\|GAGA
191	s13	Landrace	GAGA\|GAGA
192	MHMD	Landrace	GAGA\|GAGA
193	s14	Improved	GAGA\|GAGA
194	s15	Improved	GAGA\|GAGA
195	s34	Weedy	GAGA\|GAGA
196	s33	Wild sorghum	GAGA\|GAGA
197	s21	Wild sorghum	GAGA\|GAGA
198	s16	Wild sorghum	GAGA\|GAGA
199	s44	Improved	GAGA\|GAGA
200	s35	Landrace	GAGA\|GAGA
201	s31	Wild sorghum	GAGA\|GAGA
202	s17	Improved	GAGA\|GAGA
203	s18	Improved	GAGA\|GAGA
204	s20	Improved	GAGA\|GAGA
205	s19	Improved	GAGA\|GAGA
206	s22	Landrace	GAGA\|GAGA
207	s23	Landrace	GAGA\|GAGA
208	s24	Landrace	GAGA\|GAGA
209	s25	Landrace	GAGA\|GAGA
210	s26	Landrace	GAGA\|GAGA
211	s27	Landrace	GAGA\|GAGA
212	s28	Landrace	GAGA\|GAGA
213	s29	Landrace	GAGA\|GAGA
214	s30	Landrace	GAGA\|GAGA
215	SL25	Wild sorghum	GAGA\|GAGA
216	SL105	Wild sorghum	GAGA\|GAGA
217	SL108	Wild sorghum	GAGA\|GAGA
218	SL109	Wild sorghum	N\|N
219	SL12	Wild sorghum	GAGA\|GAGA
220	SL129	Wild sorghum	GAGA\|GAGA
221	SL130	Wild sorghum	GAGA\|GAGA
222	SL135	Wild sorghum	GAGA\|GAGA
223	SL136	Wild sorghum	GAGA\|GAGA
224	SL137	Wild sorghum	GAGA\|GAGA
225	SL138	Wild sorghum	GAGA\|GAGA
226	SL140	Wild sorghum	GAGA\|GAGA
227	SL141	Wild sorghum	GAGA\|GAGA
228	SL19	Wild sorghum	GAGA\|GAGA
229	SL28	Wild sorghum	GAGA\|GAGA
230	SL32	Wild sorghum	GAGA\|GAGA
231	SL35	Wild sorghum	GAGA\|GAGA
232	SL36	Wild sorghum	GAGA\|GAGA
233	SL37	Wild sorghum	GAGA\|GAGA
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	GAGA\|GAGA
236	SL43	Wild sorghum	GAGA\|GAGA
237	SL47	Wild sorghum	GAGA\|GAGA
238	SL49	Wild sorghum	GAGA\|GAGA
239	SL51	Wild sorghum	GAGA\|GAGA
240	SL53	Wild sorghum	GAGA\|GAGA
241	SL62	Wild sorghum	G\|G
242	SL83	Wild sorghum	GAGA\|GAGA
243	SL97	Landrace	GAGA\|GAGA
244	s48	Improved	GAGA\|GAGA
245	Tu13	Wild sorghum	GAGA\|GAGA
246	Tu14	Wild sorghum	GAGA\|GAGA
247	Tu30	Wild sorghum	GAGA\|GAGA
248	Tu5	Wild sorghum	GAGA\|GAGA
249	WSC5	Landrace	GAGA\|GAGA
250	WSC15	Landrace	GAGA\|GAGA
251	WSC19	Landrace	GAGA\|GAGA
252	WSC30	Landrace	GAGA\|GAGA
253	WSC52	Landrace	GAGA\|GAGA
254	WSC6	Landrace	GAGA\|GAGA
255	WSC61	Landrace	GAGA\|GAGA
256	WSC71	Improved	GAGA\|GAGA
257	WSC72	Landrace	GAGA\|GAGA
258	WSC79	Landrace	GAGA\|GAGA
259	WSC94	Landrace	GAGA\|GAGA
260	WSC99	Landrace	GAGA\|GAGA
261	WSC100	Landrace	GAGA\|GAGA
262	WSC104	Landrace	GAGA\|GAGA
263	WSC105	Landrace	GAGA\|GAGA
264	WSC12	Landrace	GAGA\|GAGA
265	WSC13	Landrace	GAGA\|GAGA
266	WSC16	Landrace	GAGA\|GAGA
267	WSC17	Landrace	GAGA\|GAGA
268	WSC18	Landrace	GAGA\|GAGA
269	WSC20	Landrace	GAGA\|GAGA
270	WSC24	Landrace	GAGA\|GAGA
271	WSC25	Landrace	GAGA\|GAGA
272	WSC29	Landrace	GAGA\|GAGA
273	WSC31	Landrace	GAGA\|GAGA
274	WSC32	Landrace	GAGA\|GAGA
275	WSC34	Landrace	GAGA\|GAGA
276	WSC38	Landrace	GAGA\|GAGA
277	WSC39	Improved	GAGA\|GAGA
278	WSC40	Landrace	GAGA\|GAGA
279	WSC54	Landrace	GAGA\|GAGA
280	WSC56	Landrace	GAGA\|GAGA
281	WSC59	Landrace	GAGA\|GAGA
282	WSC68	Landrace	GAGA\|GAGA
283	WSC70	Landrace	GAGA\|GAGA
284	WSC73	Landrace	GAGA\|GAGA
285	WSC81	Landrace	GAGA\|GAGA
286	WSC85	Improved	GAGA\|GAGA
287	WSC91	Landrace	GAGA\|GAGA
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	GAGA\|GAGA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825385	Sobic.001G000200	intron variant \|MODIFIER	Sobic.001G000200.1	mRNA			Sobic.001G000200.1.p

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